Michael Brent

2006

Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.

Flicek, P. & Brent, M. R., 2006, In: Genome biology. 7 Suppl 1, p. S8.1-9

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

2005

Begin at the beginning: Predicting genes with 5′ UTRs

Brown, R. H., Gross, S. S. & Brent, M. R., May 2005, In: Genome research. 15, 5, p. 742-747 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

25 Scopus citations

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

Wei, C., Lamesch, P., Arumugam, M., Rosenberg, J., Hu, P., Vidal, M. & Brent, M. R., Apr 2005, In: Genome research. 15, 4, p. 577-582 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

32 Scopus citations

Erratum: Sequence and comparative analysis of the chicken genome provide unique perspective on vertebrate evolution (Nature (2004) 432 (695-716))

International Chicken Genome Sequencing Consortium, Chinwalla, A. T., Cliften, P. F., Clifton, S. W., Fronick, C., Fulton, R. S., Graves, T. A., Kremitzki, C., Layman, D., Magrini, V., McPherson, J. D., Minx, P., Nash, W. E., Nhan, M. N., Nelson, J. O., Oddy, L. G., Pohl, C. S., Randall-Maher, J., Smith, S. M., Wallis, J. W., & 5 othersYang, S. P., Brent, M. R., Fulton, L. A., Mardis, E. R. & Wilson, R. K., Feb 17 2005, In: Nature. 433, 7027, p. 777 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

Gene finding in the chicken genome

Eyras, E., Reymond, A., Castelo, R., Bye, J. M., Camara, F., Flicek, P., Huckle, E. J., Parra, G., Shteynberg, D. D., Wyss, C., Rogers, J., Antonarakis, S. E., Birney, E., Guigo, R. & Brent, M. R., May 30 2005, In: BMC bioinformatics. 6, 131.

Research output: Contribution to journal › Article › peer-review

Open Access

27 Scopus citations

Genome annotation past, present, and future: How to define an ORF at each locus

Brent, M. R., Dec 2005, In: Genome research. 15, 12, p. 1777-1786 10 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

97 Scopus citations

The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans

Loftus, B. J., Fung, E., Roncaglia, P., Rowley, D., Amedeo, P., Bruno, D., Vamathevan, J., Miranda, M., Anderson, I. J., Fraser, J. A., Allen, J. E., Bosdet, I. E., Brent, M. R., Chiu, R., Doering, T. L., Donlin, M. J., D'Souza, C. A., Fox, D. S., Grinberg, V., Fu, J., & 34 othersFukushima, M., Haas, B. J., Huang, J. C., Janbon, G., Jones, S. J. M., Koo, H. L., Krzywinski, M. I., Kwon-Chung, J. K., Lengeler, K. B., Maiti, R., Marra, M. A., Marra, R. E., Mathewson, C. A., Mitchell, T. G., Pertea, M., Riggs, F. R., Salzberg, S. L., Schein, J. E., Shvartsbeyn, A., Shin, H., Shumway, M., Specht, C. A., Suh, B. B., Tenney, A., Utterback, T. R., Wickes, B. L., Wortman, J. R., Wye, N. H., Kronstad, J. W., Lodge, J. K., Heitman, J., Davis, R. W., Fraser, C. M. & Hyman, R. W., Feb 25 2005, In: Science. 307, 5713, p. 1321-1324 4 p.

Research output: Contribution to journal › Article › peer-review

566 Scopus citations

Using multiple alignments to improve gene prediction

Gross, S. S. & Brent, M. R., 2005, In: Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500, p. 374-388 15 p.

Research output: Contribution to journal › Conference article › peer-review

15 Scopus citations

2004

Gene prediction and verification in a compact genome with numerous small introns

Tenney, A. E., Brown, R. H., Vaske, C., Lodge, J. K., Doering, T. L. & Brent, M. R., Nov 2004, In: Genome research. 14, 11, p. 2330-2335 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

33 Scopus citations

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Gibbs, R. A., Weinstock, G. M., Metzker, M. L., Muzny, D. M., Sodergren, E. J., Scherer, S., Scott, G., Steffen, D., Worley, K. C., Burch, P. E., Okwuonu, G., Hines, S., Lewis, L., Deramo, C., Delgado, O., Dugan-Rocha, S., Miner, G., Morgan, M., Hawes, A., Gill, R., & 211 othersHolt, R. A., Adams, M. D., Amanatides, P. G., Baden-Tillson, H., Barnstead, M., Chin, S., Evans, C. A., Ferriera, S., Fosler, C., Glodek, A., Gu, Z., Jennings, D., Kraft, C. L., Nguyen, T., Pfannkoch, C. M., Sitter, C., Sutton, G. G., Venter, J. C., Woodage, T., Smith, D., Lee, H. M., Gustafson, E., Cahill, P., Kana, A., Doucette-Stamm, L., Weinstock, K., Fechtel, K., Weiss, R. B., Dunn, D. M., Green, E. D., Blakesley, R. W., Bouffard, G. G., de Jong, P. J., Osoegawa, K., Zhu, B., Marra, M., Schein, J., Bosdet, I., Fjell, C., Jones, S., Krzywinski, M., Mathewson, C., Siddiqui, A., Wye, N., McPherson, J., Zhao, S., Fraser, C. M., Shetty, J., Shatsman, S., Geer, K., Chen, Y., Abramzon, S., Nierman, W. C., Havlak, P. H., Chen, R., Durbin, K. J., Egan, A., Ren, Y., Song, X. Z., Li, B., Liu, Y., Qin, X., Cawley, S., Worley, K. C., Cooney, A. J., D'Souza, L. M., Martin, K., Wu, J. Q., Gonzalez-Garay, M. L., Jackson, A. R., Kalafus, K. J., McLeod, M. P., Milosavljevic, A., Virk, D., Volkov, A., Wheeler, D. A., Zhang, Z., Bailey, J. A., Eichler, E. E., Tuzun, E., Birney, E., Mongin, E., Ureta-Vidal, A., Woodwark, C., Zdobnov, E., Bork, P., Suyama, M., Torrents, D., Alexandersson, M., Trask, B. J., Young, J. M., Smith, D., Huang, H., Fechtel, K., Wang, H., Xing, H., Daniels, S., Gietzen, D., Schmidt, J., Stevens, K., Vitt, U., Wingrove, J., Camara, F., Albà, M. M., Abril, J. F., Guigo, R., Smit, A., Dubchak, I., Rubin, E. M., Couronne, O., Poliakov, A., Hübner, N., Ganten, D., Goesele, C., Hummel, O., Kreitler, T., Lee, Y. A., Monti, J., Schulz, H., Zimdahl, H., Himmelbauer, H., Lehrach, H., Jacob, H. J., Bromberg, S., Gullings-Handley, J., Jensen-Seaman, M. I., Kwitek, A. E., Lazar, J., Pasko, D., Tonellato, P. J., Twigger, S., Ponting, C. P., Duarte, J. M., Rice, S., Goodstadt, L., Beatson, S. A., Emes, R. D., Winter, E. E., Webber, C., Brandt, P., Nyakatura, G., Adetobi, M., Chiaromonte, F., Elnitski, L., Eswara, P., Hardison, R. C., Hou, M., Kolbe, D., Makova, K., Miller, W., Nekrutenko, A., Riemer, C., Schwartz, S., Taylor, J., Yang, S., Zhang, Y., Lindpaintner, K., Andrews, T. D., Caccamo, M., Clamp, M., Clarke, L., Curwen, V., Durbin, R., Eyras, E., Searle, S. M., Cooper, G. M., Batzoglou, S., Brudno, M., Sidow, A., Stone, E. A., Venter, J. C., Payseur, B. A., Bourque, G., López-Otín, C., Puente, X. S., Chakrabarti, K., Chatterji, S., Dewey, C., Pachter, L., Bray, N., Yap, V. B., Caspi, A., Tesler, S. D. G., Pevzner, P. A., Haussler, S. C. D., Roskin, K. M., Baertsch, R., Clawson, H., Furey, T. S., Hinrichs, A. S., Karolchik, D., Kent, W. J., Rosenbloom, K. R., Trumbower, H., Weirauch, M., Cooper, D. N., Stenson, P. D., Ma, B., Brent, M., Arumugam, M., Shteynberg, D., Copley, R. R., Taylor, M. S., Riethman, H., Mudunuri, U., Peterson, J., Guyer, M., Felsenfeld, A., Old, S., Mockrin, S. & Collins, F., Apr 1 2004, In: Nature. 428, 6982, p. 493-520 28 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1703 Scopus citations

Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing

Wu, J. Q., Shteynberg, D., Arumugam, M., Gibbs, R. A. & Bren, M. R., Apr 2004, In: Genome research. 14, 4, p. 665-671 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

30 Scopus citations

Recent advances in gene structure prediction

Brent, M. R. & Guigó, R., Jun 2004, In: Current Opinion in Structural Biology. 14, 3, p. 264-272 9 p.

Research output: Contribution to journal › Review article › peer-review

98 Scopus citations

Reexamining the vocabulary spurt

Ganger, J. & Brent, M. R., Jul 2004, In: Developmental Psychology. 40, 4, p. 621-632 12 p.

Research output: Contribution to journal › Review article › peer-review

154 Scopus citations

The ENCODE (ENCyclopedia of DNA Elements) Project

Feingold, E. A., Good, P. J., Guyer, M. S., Kamholz, S., Liefer, L., Wetterstrand, K., Collins, F. S., Gingeras, T. R., Kampa, D., Sekinger, E. A., Cheng, J., Hirsch, H., Ghosh, S., Zhu, Z., Patel, S., Piccolboni, A., Yang, A., Tammana, H., Bekiranov, S., Kapranov, P., & 177 othersHarrison, R., Church, G., Struhl, K., Ren, B., Kim, T. H., Barrera, L. O., Qu, C., van Calcar, S., Luna, R., Glass, C. K., Rosenfeld, M. G., Guigo, R., Antonarakis, S. E., Birney, E., Brent, M., Pachter, L., Reymond, A., Dermitzakis, E. T., Dewey, C., Keefe, D., Denoeud, F., Lagarde, J., Ashurst, J., Hubbard, T., Wesselink, J. J., Castelo, R., Eyras, E., Myers, R. M., Sidow, A., Batzoglou, S., Trinklein, N. D., Hartman, S. J., Aldred, S. F., Anton, E., Schroeder, D. I., Marticke, S. S., Nguyen, L., Schmutz, J., Grimwood, J., Dickson, M., Cooper, G. M., Stone, E. A., Asimenos, G., Brudno, M., Dutta, A., Karnani, N., Taylor, C. M., Kim, H. K., Robins, G., Stamatoyannopoulos, G., Stamatoyannopoulos, J. A., Dorschner, M., Sabo, P., Hawrylycz, M., Humbert, R., Wallace, J., Yu, M., Navas, P. A., McArthur, M., Noble, W. S., Dunham, I., Koch, C. M., Andrews, R. M., Clelland, G. K., Wilcox, S., Fowler, J. C., James, K. D., Groth, P., Dovey, O. M., Ellis, P. D., Wraight, V. L., Mungall, A. J., Dhami, P., Fiegler, H., Langford, C. F., Carter, N. P., Vetrie, D., Snyder, M., Euskirchen, G., Urban, A. E., Nagalakshmi, U., Rinn, J., Popescu, G., Bertone, P., Hartman, S., Rozowsky, J., Emanuelsson, O., Royce, T., Chung, S., Gerstein, M., Lian, Z., Lian, J., Nakayama, Y., Weissman, S., Stolc, V., Tongprasit, W., Sethi, H., Jones, S., Marra, M., Shin, H., Schein, J., Clamp, M., Lindblad-Toh, K., Chang, J., Jaffe, D. B., Kamal, M., Lander, E. S., Mikkelsen, T. S., Vinson, J., Zody, M. C., de Jong, P. J., Osoegawa, K., Nefedov, M., Zhu, B., Baxevanis, A. D., Wolfsberg, T. G., Crawford, G. E., Whittle, J., Holt, I. E., Vasicek, T. J., Zhou, D., Luo, S., Green, E. D., Bouffard, G. G., Margulies, E. H., Portnoy, M. E., Hansen, N. F., Thomas, P. J., McDowell, J. C., Maskeri, B., Young, A. C., Idol, J. R., Blakesley, R. W., Schuler, G., Miller, W., Hardison, R., Elnitski, L., Shah, P., Salzberg, S. L., Pertea, M., Majoros, W. H., Haussler, D., Thomas, D., Rosenbloom, K. R., Clawson, H., Siepel, A., Kent, W. J., Weng, Z., Jin, S., Halees, A., Burden, H., Karaoz, U., Fu, Y., Yu, Y., Ding, C., Cantor, C. R., Kingston, R. E., Dennis, J., Green, R. D., Singer, M. A., Richmond, T. A., Norton, J. E., Farnham, P. J., Oberley, M. J., Inman, D. R., McCormick, M. R., Kim, H., Middle, C. L., Pirrung, M. C., Fu, X. D., Kwon, Y. S., Ye, Z., Dekker, J., Tabuchi, T. M., Gheldof, N., Dostie, J. & Harvey, S. C., Oct 22 2004, In: Science. 306, 5696, p. 636-640 5 p.

Research output: Contribution to journal › Review article › peer-review

1772 Scopus citations

The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)

Gerhard, D. S., Wagner, L., Feingold, E. A., Shenmen, C. M., Grouse, L. H., Schuler, G., Klein, S. L., Old, S., Rasooly, R., Good, P., Guyer, M., Peck, A. M., Derge, J. G., Lipman, D., Collins, F. S., Jang, W., Sherry, S., Feolo, M., Misquitta, L., Lee, E., & 95 othersRotmistrovsky, K., Greenhut, S. F., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Haussler, D., Kent, J., Diekhans, M., Furey, T., Brent, M., Prange, C., Schreiber, K., Shapiro, N., Bhat, N. K., Hopkins, R. F., Hsie, F., Driscoll, T., Soares, M. B., Bonaldo, M. F., Casavant, T. L., Scheetz, T. E., Brownstein, M. J., Usdin, T. B., Toshiyuki, S., Carninci, P., Piao, Y., Dudekula, D. B., Ko, M. S. H., Kawakami, K., Suzuki, Y., Sugano, S., Gruber, C. E., Smith, M. R., Simmons, B., Moore, T., Waterman, R., Johnson, S. L., Ruan, Y., Lin Wei, C., Mathavan, S., Gunaratne, P. H., Wu, J., Garcia, A. M., Hulyk, S. W., Fuh, E., Yuan, Y., Sneed, A., Kowis, C., Hodgson, A., Muzny, D. M., McPherson, J., Gibbs, R. A., Fahey, J., Helton, E., Ketteman, M., Madan, A., Rodrigues, S., Sanchez, A., Whiting, M., Madan, A., Young, A. C., Wetherby, K. D., Granite, S. J., Kwong, P. N., Brinkley, C. P., Pearson, R. L., Bouffard, G. G., Blakesly, R. W., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Butterfield, Y. S. N., Griffith, M., Griffith, O. L., Krzywinski, M. I., Liao, N., Morrin, R., Palmquist, D., Petrescu, A. S., Skalska, U., Smailus, D. E., Stott, J. M., Schnerch, A., Schein, J. E., Jones, S. J. M., Holt, R. A., Baross, A., Marra, M. A., Clifton, S., Makowski, K. A., Bosak, S. & Malek, J., Oct 2004, In: Genome research. 14, 10 B, p. 2121-2127 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

429 Scopus citations

2003

A probabilistic model for learning concatenative morphology

Snover, M. G. & Brent, M. R., 2003, Advances in Neural Information Processing Systems 15 - Proceedings of the 2002 Conference, NIPS 2002. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

6 Scopus citations

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

Guigó, R., Dermitzakis, E. T., Agarwal, P., Ponting, C. P., Parra, G., Reymond, A., Abril, J. F., Keibler, E., Lyle, R., Ucla, C., Antonarakis, S. E. & Brent, M. R., Feb 4 2003, In: Proceedings of the National Academy of Sciences of the United States of America. 100, 3, p. 1140-1145 6 p.

Research output: Contribution to journal › Article › peer-review

90 Scopus citations

Eval: A software package for analysis of genome annotations

Keibler, E. & Brent, M. R., Oct 17 2003, In: BMC bioinformatics. 4, 50.

Research output: Contribution to journal › Article › peer-review

Open Access

38 Scopus citations

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

Flicek, P., Keibler, E., Hu, P., Korf, I. & Brent, M. R., Jan 2003, In: Genome research. 13, 1, p. 46-54 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

80 Scopus citations

The DNA sequence of human chromosome 7

Hillier, L. D. W., Fulton, R. S., Fulton, L. A., Graves, T. A., Pepin, K. H., Wagner-McPherson, C., Layman, D., Maas, J., Jaeger, S., Walker, R., Wylie, K., Sekhon, M., Becker, M. C., O'Laughlin, M. D., Schaller, M. E., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E., Cordes, M., & 87 othersDu, H., Sun, H., Edwards, J., Bradshaw-Cordum, H., Ali, J., Andrews, S., Isak, A., Van Brunt, A., Nguyen, C., Du, F., Lamar, B., Courtney, L., Kalicki, J., Ozersky, P., Bielicki, L., Scott, K., Holmes, A., Harkins, R., Harris, A., Strong, C. M., Hou, S., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Leonard, S., Rohlfing, T., Rock, S. M., Tin-Wollam, A. M., Abbott, A., Minx, P., Maupin, R., Strowmatt, C., Latreille, P., Miller, N., Johnson, D., Murray, J., Woessner, J. P., Wendl, M. C., Yang, S. P., Schultz, B. R., Wallis, J. W., Spieth, J., Bieri, T. A., Nelson, J. O., Berkowicz, N., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Bedell, J. A., Mardis, E. R., Clifton, S. W., Chissoe, S. L., Marra, M. A., Raymond, C., Haugen, E., Gillett, W., Zhou, Y., James, R., Phelps, K., Iadanoto, S., Bubb, K., Simms, E., Levy, R., Clendenning, J., Kaul, R., Kent, W. J., Furey, T. S., Baertsch, R. A., Brent, M. R., Keibler, E., Flicek, P., Borkk, P., Suyamak, M., Bailey, J. A., Portnoy, M. E., Torrentsk, D., Chinwalla, A. T., Gish, W. R., Eddy, S. R., McPherson, J. D., Olson, M. V., Eichler, E. E., Green, E. D., Waterston, R. H. & Wilson, R. K., Jul 10 2003, In: Nature. 424, 6945, p. 157-164 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

214 Scopus citations

The effects of evolutionary distance on TWINSCAN, an algorithm for pair-wise comparative gene prediction

Wang, M., Buhler, J. & Brent, M. R., 2003, In: Cold Spring Harbor symposia on quantitative biology. 68, p. 125-130 6 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics

Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D'Eustachio, P., Fitch, D. H. A., Fulton, L. A., Fulton, R. E., Griffiths-Jones, S., Harris, T. W., Hillier, L. D. W., Kamath, R., Kuwabara, P. E., & 16 othersMardis, E. R., Marra, M. A., Miner, T. L., Minx, P., Mullikin, J. C., Plumb, R. W., Rogers, J., Schein, J. E., Sohrmann, M., Spieth, J., Stajich, J. E., Wei, C., Willey, D., Wilson, R. K., Durbin, R. & Waterston, R. H., Nov 17 2003, In: PLoS biology. 1, 2

Research output: Contribution to journal › Article › peer-review

Open Access

690 Scopus citations

2002

A Probabilistic Model for Learning Concatenative Morphology

Snover, M. G. & Brent, M. R., 2002, NIPS 2002: Proceedings of the 15th International Conference on Neural Information Processing Systems. Becker, S., Thrun, S. & Obermayer, K. (eds.). MIT Press Journals, p. 1513-1520 8 p. (NIPS 2002: Proceedings of the 15th International Conference on Neural Information Processing Systems).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Initial sequencing and comparative analysis of the mouse genome

Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T., Bork, P., & 202 othersBotcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigó, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., LaHillier, D. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., Karlsson, E. K., Karolchik, D., Kasprzyk, A., Kawai, J., Keibler, E., Kells, C., Kent, W. J., Kirby, A., Kolbe, D. L., Korf, I., Kucherlapati, R. S., Kulbokas, E. J., Kulp, D., Landers, T., Leger, J. P., Leonard, S., Letunic, I., Levine, R., Li, J., Li, M., Lloyd, C., Lucas, S., Ma, B., Maglott, D. R., Mardis, E. R., Matthews, L., Mauceli, E., Mayer, J. H., McCarthy, M., McCombie, W. R., McLaren, S., McLay, K., McPherson, J. D., Meldrim, J., Meredith, B., Mesirov, J. P., Miller, W., Miner, T. L., Mongin, E., Montgomery, K. T., Morgan, M., Mott, R., Mullikin, J. C., Muzny, D. M., Nash, W. E., Nelson, J. O., Nhan, M. N., Nicol, R., Ning, Z., Nusbaum, C., O'Connor, M. J., Okazaki, Y., Oliver, K., Overton-Larty, E., Pachter, L., Parra, G., Pepin, K. H., Peterson, J., Pevzner, P., Plumb, R., Pohl, C. S., Poliakov, A., Ponce, T. C., Ponting, C. P., Potter, S., Quail, M., Reymond, A., Roe, B. A., Roskin, K. M., Rubin, E. M., Rust, A. G., Santos, R., Sapojnikov, V., Schultz, B., Schultz, J., Schwartz, M. S., Schwartz, S., Scott, C., Seaman, S., Searle, S., Sharpe, T., Sheridan, A., Shownkeen, R., Sims, S., Singer, J. B., Slater, G., Smit, A., Smith, D. R., Spencer, B., Stabenau, A., Stange-Thomann, N., Sugnet, C., Suyama, M., Tesler, G., Thompson, J., Torrents, D., Trevaskis, E., Tromp, J., Ucla, C., Ureta-Vidal, A., Vinson, J. P., von Niederhausern, A. C., Wade, C. M., Wall, M., Weber, R. J., Weiss, R. B., Wendl, M. C., West, A. P., Wetterstrand, K., Wheeler, R., Whelan, S., Wierzbowski, J., Willey, D., Williams, S., Wilson, R. K., Winter, E., Worley, K. C., Wyman, D., Yang, S., Yang, S. P., Zdobnov, E. M., Zody, M. C. & Lander, E. S., Dec 5 2002, In: Nature. 420, 6915, p. 520-562 43 p.

Research output: Contribution to journal › Article › peer-review

Open Access

5499 Scopus citations

Predicting full-length transcripts

Brent, M. R., Jul 1 2002, In: Trends in Biotechnology. 20, 7, p. 273-275 3 p.

Research output: Contribution to journal › Review article › peer-review

8 Scopus citations

2001

Integrating genomic homology into gene structure prediction

Korf, I., Flicek, P., Duan, D. & Brent, M. R., 2001, In: Bioinformatics. 17, SUPPL. 1, p. S140-S148

Research output: Contribution to journal › Article › peer-review

Open Access

342 Scopus citations

The role of exposure to isolated words in early vocabulary development

Brent, M. R. & Siskind, J. M., Sep 2001, In: Cognition. 81, 2, p. B33-B44

Research output: Contribution to journal › Article › peer-review

327 Scopus citations

1999

Efficient, probabilistically sound algorithm for segmentation and word discovery

Brent, M. R., 1999, In: Machine Learning. 34, 1, p. 71-105 35 p.

Research output: Contribution to journal › Article › peer-review

Open Access

193 Scopus citations

On the discovery of novel wordlike units from utterances: An artificial-language study with implications for native-language acquisition

Dahan, D. & Brent, M. R., Jun 1999, In: Journal of Experimental Psychology: General. 128, 2, p. 165-185 21 p.

Research output: Contribution to journal › Article › peer-review

64 Scopus citations

Speech segmentation and word discovery: A computational perspective

Brent, M. R., 1999, In: Trends in Cognitive Sciences. 3, 8, p. 294-301 8 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

96 Scopus citations

1997

Syntactic categorization in early language acquisition: Formalizing the role of distributional analysis

Cartwright, T. A. & Brent, M. R., May 2 1997, In: Cognition. 63, 2, p. 121-170 50 p.

Research output: Contribution to journal › Article › peer-review

Open Access

96 Scopus citations

Toward a Unified Model of Lexical Acquisition and Lexical Access

Brent, M. R., May 1997, In: Journal of Psycholinguistic Research. 26, 3, p. 363-375 13 p.

Research output: Contribution to journal › Article › peer-review

29 Scopus citations

1996

Advances in the computational study of language acquisition

Brent, M. R., 1996, In: Cognition. 61, 1-2 SPEC. ISS., p. 1-38 38 p.

Research output: Contribution to journal › Article › peer-review

Open Access

39 Scopus citations

Distributional regularity and phonotactic constraints are useful for segmentation

Brent, M. R. & Cartwright, T. A., 1996, In: Cognition. 61, 1-2 SPEC. ISS., p. 93-125 33 p.

Research output: Contribution to journal › Article › peer-review

Open Access

299 Scopus citations

Lexical categorization: Fitting template grammars by incremental mdl optimization

Brent, M. R. & Cartwright, T. A., 1996, Grammatical Inference: Learning Syntax from Sentences - 3rd International Colloquium, ICGI-1996, Proceedings. de la Higuera, C. & Miclet, L. (eds.). Springer Verlag, p. 84-94 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1147).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1994