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Matthew Wyczalkowski

Assistant Professor of Medicine

 https://orcid.org/0000-0003-4197-551X
    • 11751
      Citations
    1997 …2024

    Research activity per year

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    • Pan-cancer proteogenomics characterization of tumor immunity

      Clinical Proteomic Tumor Analysis Consortium, Petralia, F., Ma, W., Yaron, T. M., Caruso, F. P., Tignor, N., Wang, J. M., Charytonowicz, D., Johnson, J. L., Huntsman, E. M., Marino, G. B., Calinawan, A., Evangelista, J. E., Selvan, M. E., Chowdhury, S., Rykunov, D., Krek, A., Song, X., Turhan, B. & Christianson, K. E. & 125 others, Lewis, D. A., Deng, E. Z., Clarke, D. J. B., Whiteaker, J. R., Kennedy, J. J., Zhao, L., Segura, R. L., Batra, H., Raso, M. G., Parra, E. R., Soundararajan, R., Tang, X., Li, Y., Yi, X., Satpathy, S., Wang, Y., Wiznerowicz, M., González-Robles, T. J., Iavarone, A., Gosline, S. J. C., Reva, B., Robles, A. I., Nesvizhskii, A. I., Mani, D. R., Gillette, M. A., Klein, R. J., Cieslik, M., Zhang, B., Paulovich, A. G., Sebra, R., Gümüş, Z. H., Hostetter, G., Fenyö, D., Omenn, G. S., Cantley, L. C., Ma'ayan, A., Lazar, A. J., Ceccarelli, M., Wang, P., Abelin, J., Aguet, F., Akiyama, Y., An, E., Anand, S., Anurag, M., Babur, Ö., Bavarva, J., Birger, C., Birrer, M. J., Cao, S., Carr, S. A., Chan, D. W., Chinnaiyan, A. M., Cho, H., Clauser, K., Colaprico, A., Zhou, D. C., da Veiga Leprevost, F., Day, C., Dhanasekaran, S. M., Ding, L., Domagalski, M. J., Dou, Y., Druker, B. J., Edwards, N., Ellis, M. J., Foltz, S. M., Francis, A., Geffen, Y., Getz, G., Heiman, D. I., Hong, R., Hu, Y., Huang, C., Jaehnig, E. J., Jewell, S. D., Ji, J., Jiang, W., Katsnelson, L., Ketchum, K. A., Kolodziejczak, I., Krug, K., Kumar-Sinha, C., Lei, J. T., Liang, W. W., Liao, Y., Lindgren, C. M., Liu, T., Liu, W., McDermott, J., McKerrow, W., Mesri, M., Mumphrey, M. B., Newton, C. J., Oldroyd, R., Payne, S. H., Pugliese, P., Rodland, K. D., Rodrigues, F. M., Ruggles, K. V., Savage, S. R., Schadt, E. E., Schnaubelt, M., Schraink, T., Schürer, S., Shi, Z., Smith, R. D., Song, F., Song, Y., Stathias, V., Storrs, E. P., Tan, J., Terekhanova, N. V., Thangudu, R. R., Thiagarajan, M., Wang, L. B., Wen, B., Wu, Y., Wyczalkowski, M. A., Yao, L., Li, Q. K., Zhang, H., Zhang, Q., Zhang, X. & Zhang, Z., Feb 29 2024, In: Cell. 187, 5, p. 1255-1277.e27

      Research output: Contribution to journal › Article › peer-review

      Open Access
      14 Scopus citations

    • Author Correction: Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma (Nature Communications, (2023), 14, 1, (1681), 10.1038/s41467-023-37211-7)

      Wu, Y., Terekhanova, N. V., Caravan, W., Naser Al Deen, N., Lal, P., Chen, S., Mo, C. K., Cao, S., Li, Y., Karpova, A., Liu, R., Zhao, Y., Shinkle, A., Strunilin, I., Weimholt, C., Sato, K., Yao, L., Serasanambati, M., Yang, X. & Wyczalkowski, M. & 22 others, Zhu, H., Zhou, D. C., Jayasinghe, R. G., Mendez, D., Wendl, M. C., Clark, D., Newton, C., Ruan, Y., Reimers, M. A., Pachynski, R. K., Kinsinger, C., Jewell, S., Chan, D. W., Zhang, H., Chaudhuri, A. A., Chheda, M. G., Humphreys, B. D., Mesri, M., Rodriguez, H., Hsieh, J. J., Ding, L. & Chen, F., Dec 2023, In: Nature communications. 14, 1, 2817.

      Research output: Contribution to journal › Comment/debate

      Open Access

    • Combining the Tyrosine Kinase Inhibitor Cabozantinib and the mTORC1/2 Inhibitor Sapanisertib Blocks ERK Pathway Activity and Suppresses Tumor Growth in Renal Cell Carcinoma

      Wu, Y., Chen, S., Yang, X., Sato, K., Lal, P., Wang, Y., Shinkle, A. T., Wendl, M. C., Primeau, T. M., Zhao, Y., Gould, A., Sun, H., Mudd, J. L., Hoog, J., Mashl, R. J., Wyczalkowski, M. A., Mo, C. K., Liu, R., Herndon, J. M. & Davies, S. R. & 19 others, Liu, D., Ding, X., Evrard, Y. A., Welm, B. E., Lum, D., Koh, M. Y., Welm, A. L., Chuang, J. H., Moscow, J. A., Meric-Bernstam, F., Govindan, R., Li, S., Hsieh, J., Fields, R. C., Lim, K. H., Ma, C. X., Zhang, H., Ding, L. & Chen, F., Dec 15 2023, In: Cancer research. 183, 24, p. 4161-4178 18 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2 Scopus citations

    • Deep learning integrates histopathology and proteogenomics at a pan-cancer level

      Clinical Proteomic Tumor Analysis Consortium, Wang, J. M., Hong, R., Demicco, E. G., Tan, J., Lazcano, R., Moreira, A. L., Li, Y., Calinawan, A., Razavian, N., Schraink, T., Gillette, M. A., Omenn, G. S., An, E., Rodriguez, H., Tsirigos, A., Ruggles, K. V., Ding, L., Robles, A. I. & Mani, D. R. & 105 others, Rodland, K. D., Lazar, A. J., Liu, W., Fenyö, D., Aguet, F., Akiyama, Y., Anand, S., Anurag, M., Babur, Ö., Bavarva, J., Birger, C., Birrer, M. J., Cantley, L. C., Cao, S., Carr, S. A., Ceccarelli, M., Chan, D. W., Chinnaiyan, A. M., Cho, H., Chowdhury, S., Cieslik, M. P., Clauser, K. R., Colaprico, A., Zhou, D. C., da Veiga Leprevost, F., Day, C., Dhanasekaran, S. M., Domagalski, M. J., Dou, Y., Druker, B. J., Edwards, N., Ellis, M. J., Selvan, M. E., Foltz, S. M., Francis, A., Geffen, Y., Getz, G., Gonzalez Robles, T. J., Gosline, S. J. C., Gümüş, Z. H., Heiman, D. I., Hiltke, T., Hostetter, G., Hu, Y., Huang, C., Huntsman, E., Iavarone, A., Jaehnig, E. J., Jewell, S. D., Ji, J., Jiang, W., Johnson, J. L., Katsnelson, L., Ketchum, K. A., Kolodziejczak, I., Krug, K., Kumar-Sinha, C., Lei, J. T., Liang, W. W., Liao, Y., Lindgren, C. M., Liu, T., Ma, W., Rodrigues, F. M., McKerrow, W., Mesri, M., Nesvizhskii, A. I., Newton, C. J., Oldroyd, R., Paulovich, A. G., Payne, S. H., Petralia, F., Pugliese, P., Reva, B., Rykunov, D., Satpathy, S., Savage, S. R., Schadt, E. E., Schnaubelt, M., Schürer, S., Shi, Z., Smith, R. D., Song, X., Song, Y., Stathias, V., Storrs, E. P., Terekhanova, N. V., Thangudu, R. R., Thiagarajan, M., Tignor, N., Wang, L. B., Wang, P., Wang, Y., Wen, B., Wiznerowicz, M., Wu, Y., Wyczalkowski, M. A., Yao, L., Yaron, T. M., Yi, X., Zhang, B., Zhang, H., Zhang, Q., Zhang, X. & Zhang, Z., Sep 19 2023, In: Cell Reports Medicine. 4, 9, 101173.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      7 Scopus citations

    • Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma

      Wu, Y., Terekhanova, N. V., Caravan, W., Naser Al Deen, N., Lal, P., Chen, S., Mo, C. K., Cao, S., Li, Y., Karpova, A., Liu, R., Zhao, Y., Shinkle, A., Strunilin, I., Weimholt, C., Sato, K., Yao, L., Serasanambati, M., Yang, X. & Wyczalkowski, M. & 22 others, Zhu, H., Zhou, D. C., Jayasinghe, R. G., Mendez, D., Wendl, M. C., Clark, D., Newton, C., Ruan, Y., Reimers, M. A., Pachynski, R. K., Kinsinger, C., Jewell, S., Chan, D. W., Zhang, H., Chaudhuri, A. A., Chheda, M. G., Humphreys, B. D., Mesri, M., Rodriguez, H., Hsieh, J. J., Ding, L. & Chen, F., Dec 2023, In: Nature communications. 14, 1, 1681.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      14 Scopus citations
    View all 69 Research outputs