Research Output per year
Personal profile
Research interests
The development of genomics, bioinformatics and statistical methods as they apply to the study of cancer biology and medicine. A particular focus on the translation of genomics data from whole genome, exome and transcriptome sequencing into clinically actionable observations and personalized cancer therapies.
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- 7 Similar Profiles
Genome
Medicine & Life Sciences
Neoplasms
Medicine & Life Sciences
Mutation
Medicine & Life Sciences
RNA Sequence Analysis
Medicine & Life Sciences
Transcriptome
Medicine & Life Sciences
Genes
Medicine & Life Sciences
Breast Neoplasms
Medicine & Life Sciences
High-Throughput Nucleotide Sequencing
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output 2003 2019
Accounting for proximal variants improves neoantigen prediction
Hundal, J., Kiwala, S., Feng, Y. Y., Liu, C. J., Govindan, R., Chapman, W., Uppaluri, R., Swamidass, J., Griffith, O., Mardis, E. R. & Griffith, M., Jan 1 2019, In : Nature Genetics. 51, 1, p. 175-179 5 p.Research output: Contribution to journal › Article › Research › peer-review
Peptides
Major Histocompatibility Complex
Immunotherapy
Neoplasms
2
Citations
(Scopus)
Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples
Barnell, E. K., Ronning, P., Campbell, K. M., Krysiak, K., Ainscough, B. J., Sheta, L. M., Pema, S. P., Schmidt, A. D., Richters, M., Cotto, K. C., Danos, A. M., Ramirez, C., Skidmore, Z. L., Spies, N. C., Hundal, J., Sediqzad, M. S., Kunisaki, J., Gomez, F., Trani, L., Matlock, M. & 4 others, Apr 1 2019, In : Genetics in Medicine. 21, 4, p. 972-981 10 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access
Neoplasms
Reading
Artifacts
2
Citations
(Scopus)
A case of acute myeloid leukemia with promyelocytic features characterized by expression of a novel RARG-CPSF6 fusion
Miller, C., Tricarico, C., Skidmore, Z. L., Uy, G., Lee, Y-S., Hassan, A., O'Laughlin, M. D., Schmidt, H., Tian, L., Duncavage, E., Griffith, M., Griffith, O., Welch, J. & Wartman, L., Jun 12 2018, In : Blood advances. 2, 11, p. 1295-1299 5 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access
Leukemic Gene Expression Regulation
Fusion Oncogene Proteins
mRNA Cleavage and Polyadenylation Factors
Chromosomes, Human, Pair 15
Genetic Translocation
2
Citations
(Scopus)
Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards
Clinical Genome Resource Somatic Working Group and Clinical Interpretation of Variants in Cancer team members, Nov 1 2018, In : Human mutation. 39, 11, p. 1721-1732 12 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access
Genome
Neoplasms
Hospital Distribution Systems
Social Adjustment
Workflow
A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data
Ainscough, B. J., Barnell, E. K., Ronning, P., Campbell, K. M., Wagner, A. H., Fehniger, T., Dunn, G., Uppaluri, R., Govindan, R., Rohan, T. E., Griffith, M., Mardis, E. R., Swamidass, J. & Griffith, O., Dec 1 2018, In : Nature Genetics. 50, 12, p. 1735-1743 9 p.Research output: Contribution to journal › Article › Research › peer-review
Learning
Neoplasms
Machine Learning