Lucinda Antonacci-Fulton

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Lucinda Antonacci-Fulton

Assistant Professor of Genetics

 https://orcid.org/0000-0001-6429-4288
    • 215535
      Citations
    1993 …2024

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    • 2010

      DNMT3A mutations in acute myeloid leukemia

      Ley, T. J., Ding, L., Walter, M. J., McLellan, M. D., Lamprecht, T., Larson, D. E., Kandoth, C., Payton, J. E., Baty, J., Welch, J., Harris, C. C., Lichti, C. F., Townsend, R. R., Fulton, R. S., Dooling, D. J., Koboldt, D. C., Schmidt, H., Zhang, Q., Osborne, J. R. & Lin, L. & 28 others, O'Laughlin, M., McMichael, J. F., Delehaunty, K. D., McGrath, S. D., Fulton, L. A., Magrini, V. J., Vickery, T. L., Hundal, J., Cook, L. L., Conyers, J. J., Swift, G. W., Reed, J. P., Alldredge, P. A., Wylie, T., Walker, J., Kalicki, J., Watson, M. A., Heath, S., Shannon, W. D., Varghese, N., Nagarajan, R., Westervelt, P., Tomasson, M. H., Link, D. C., Graubert, T. A., DiPersio, J. F., Mardis, E. R. & Wilson, R. K., Dec 16 2010, In: New England Journal of Medicine. 363, 25, p. 2424-2433 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1652 Scopus citations

    • Genome remodelling in a basal-like breast cancer metastasis and xenograft

      Ding, L., Ellis, M. J., Li, S., Larson, D. E., Chen, K., Wallis, J. W., Harris, C. C., McLellan, M. D., Fulton, R. S., Fulton, L. L., Abbott, R. M., Hoog, J., Dooling, D. J., Koboldt, D. C., Schmidt, H., Kalicki, J., Zhang, Q., Chen, L., Lin, L. & Wendl, M. C. & 49 others, McMichael, J. F., Magrini, V. J., Cook, L., McGrath, S. D., Vickery, T. L., Appelbaum, E., Deschryver, K., Davies, S., Guintoli, T., Lim, L., Crowder, R., Tao, Y., Snider, J. E., Smith, S. M., Dukes, A. F., Sanderson, G. E., Pohl, C. S., Delehaunty, K. D., Fronick, C. C., Pape, K. A., Reed, J. S., Robinson, J. S., Hodges, J. S., Schierding, W., Dees, N. D., Shen, D., Locke, D. P., Wiechert, M. E., Eldred, J. M., Peck, J. B., Oberkfell, B. J., Lolofie, J. T., Du, F., Hawkins, A. E., Oĝlaughlin, M. D., Bernard, K. E., Cunningham, M., Elliott, G., Mason, M. D., Thompson, D. M., Ivanovich, J. L., Goodfellow, P. J., Perou, C. M., Weinstock, G. M., Aft, R., Watson, M., Ley, T. J., Wilson, R. K. & Mardis, E. R., Apr 15 2010, In: Nature. 464, 7291, p. 999-1005 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1018 Scopus citations

    • Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other cronobacter species

      Kucerova, E., Clifton, S. W., Xia, X. Q., Long, F., Porwollik, S., Fulton, L., Fronick, C., Minx, P., Kyung, K., Warren, W., Fulton, R., Feng, D., Wollam, A., Shah, N., Bhonagiri, V., Nash, W. E., Hallsworth-Pepin, K., Wilson, R. K., McClelland, M. & Forsythe, S. J., Mar 8 2010, In: PloS one. 5, 3, e9556.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      186 Scopus citations

    • Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

      Baxter, L., Tripathy, S., Ishaque, N., Boot, N., Cabral, A., Kemen, E., Thines, M., Ah-Fong, A., Anderson, R., Badejoko, W., Bittner-Eddy, P., Boore, J. L., Chibucos, M. C., Coates, M., Dehal, P., Delehaunty, K., Dong, S., Downton, P., Dumas, B. & Fabro, G. & 32 others, Fronick, C., Fuerstenberg, S. I., Fulton, L., Gaulin, E., Govers, F., Hughes, L., Humphray, S., Jiang, R. H. Y., Judelson, H., Kamoun, S., Kyung, K., Meijer, H., Minx, P., Morris, P., Nelson, J., Phuntumart, V., Qutob, D., Rehmany, A., Rougon-Cardoso, A., Ryden, P., Torto-Alalibo, T., Studholme, D., Wang, Y., Win, J., Wood, J., Clifton, S. W., Rogers, J., Van Den Ackerveken, G., Jones, J. D. G., McDowell, J. M., Beynon, J. & Tyler, B. M., Dec 10 2010, In: Science. 330, 6010, p. 1549-1551 3 p.

      Research output: Contribution to journal › Article › peer-review

      372 Scopus citations

    • The genome of a songbird

      Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M. & Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      667 Scopus citations

    • Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences

      Lawniczak, M. K. N., Emrich, S. J., Holloway, A. K., Regier, A. P., Olson, M., White, B., Redmond, S., Fulton, L., Appelbaum, E., Godfrey, J., Farmer, C., Chinwalla, A., Yang, S. P., Minx, P., Nelson, J., Kyung, K., Walenz, B. P., Garcia-Hernandez, E., Aguiar, M. & Viswanathan, L. D. & 10 others, Rogers, Y. H., Strausberg, R. L., Saski, C. A., Lawson, D., Collins, F. H., Kafatos, F. C., Christophides, G. K., Clifton, S. W., Kirkness, E. F. & Besansky, N. J., Oct 22 2010, In: Science. 330, 6003, p. 512-514 3 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      212 Scopus citations
    • 2009

      A burst of segmental duplications in the genome of the African great ape ancestor

      Marques-Bonet, T., Kidd, J. M., Ventura, M., Graves, T. A., Cheng, Z., Hillier, L. W., Jiang, Z., Baker, C., Malfavon-Borja, R., Fulton, L. A., Alkan, C., Aksay, G., Girirajan, S., Siswara, P., Chen, L., Cardone, M. F., Navarro, A., Mardis, E. R., Wilson, R. K. & Eichler, E. E., Feb 12 2009, In: Nature. 457, 7231, p. 877-881 5 p.

      Research output: Contribution to journal › Article › peer-review

      185 Scopus citations

    • Comparative Analysis and Functional Annotation of a Large Expressed Sequence Tag Collection of Apple

      Gasic, K., Gonzalez, D. O., Thimmapuram, J., Liu, L., Malnoy, M., Gong, G., Han, Y., Vodkin, L. O., Aldwinckle, H. S., Carroll, N. J., Orvis, K. S., Goldsbrough, P., Clifton, S., Pape, D., Fulton, L., Martin, J., Theising, B., Wisniewski, M. E., Fazio, G. & Feltus, F. A. & 1 others, Korban, S. S., Mar 2009, In: Plant Genome. 2, 1, TPG2PLANTGENOME2008110014.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      28 Scopus citations

    • Detailed analysis of a contiguous 22-Mb region of the maize genome

      Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J. & Lin, J. & 35 others, Kim, H. R., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000728.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      38 Scopus citations

    • Lineage-specific biology revealed by a finished genome assembly of the mouse

      Church, D. M., Goodstadt, L., Hillier, L. W., Zody, M. C., Goldstein, S., She, X., Bult, C. J., Agarwala, R., Cherry, J. L., DiCuccio, M., Hlavina, W., Kapustin, Y., Meric, P., Maglott, D., Birtle, Z., Marques, A. C., Graves, T., Zhou, S., Teague, B. & Potamousis, K. & 155 others, Churas, C., Place, M., Herschleb, J., Runnheim, R., Forrest, D., Amos-Landgraf, J., Schwartz, D. C., Cheng, Z., Lindblad-Toh, K., Eichler, E. E., Ponting, C. P., Muzny, D. M., Dugan-Rocha, S., Ding, Y., Scherer, S. E., Buhay, C. J., Cree, A., Hernandez, J., Holder, M., Hume, J., Jackson, L. R., Kovar, C., Lee, S. L., Lewis, L. R., Metzker, M. L., Narareth, L. V., Sabo, A., Sodergren, E., Gibbs, R. A., FitzGerald, M., Cook, A., Jaffe, D. B., Garber, M., Zimmer, A. R., Pirun, M., Russell, L., Sharpe, T., Chaturvedi, M. K. K., Wilkinson, J., LaButti, K., Yang, X., Bessette, D., Allen, N. R., Nguyen, C., Nguyen, T., Dunbar, C., Lubonja, R., Matthews, C., Liu, X., Benamara, M., Negash, T., Lokyitsang, T., Decktor, K., Piqani, B., Munson, G., Tenzin, P., Stone, S., Macdonald, P., Arachchi, H., Abouelleil, A., Lui, A., Priest, M., Gearin, G., Brown, A., Aftuck, L., Shea, T., Sykes, S., Berlin, A., Chu, J., Dooley, K., Hagopian, D., Hall, J., Hafez, N., Smith, C. L., Olandt, P., Miller, K., Ventkataraman, V., Rachupka, A., Dorris, L., Ayotte, L., Mabbitt, R., Erickson, J., Horn, A., An, P., Naylor, J. W., Settipalli, S., Lander, E. S., Wilson, R. K., Graves, T. A., Fulton, R. S., Rock, S. M., Chinwalla, A. T., Bernard, K., Courtney, L. P., Fronick, C., Fulton, L. L., O'Laughlin, M., Kremitzki, C. L., Minx, P. J., Nelson, J. O., Schatzkamer, K. L., Strong, C., Wollam, A. M., Weinstock, G. M., Yang, S. P., Rogers, J., Grafham, D., Humphray, S., Nicholson, C., Bird, C., Brown, A. J., Burton, J., Clee, C., Hunt, A., Jones, M. C., Lloyd, C., Matthews, L., Mclaren, K., Mclaren, S., McLay, K., Palmer, S. A., Plumb, R., Shownkeen, R., Sims, S., Quail, M. A., Whitehead, S. L., Willey, D. L., Deschamps, S., Kenton, S., Song, L., Do, T., Roe, B., Bouffard, G. G., Blakesley, R. W., Green, E. D., Kucherlapati, R., Grills, G., Li, L., Montgomery, K. T., Kramer, M., Speigel, L., McCombie, W. R., Lucas, S., Terry, A., Gordon, L., Stubbs, L., Denny, P., Brown, S. D. M., Mallon, A. M., Campbell, R. D., Botherby, M. R. M., Jackson, I. J., Rubenfield, M. J., Rogosin, A. M. & Smith, D. R., May 2009, In: PLoS biology. 7, 5, e1000112.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      393 Scopus citations

    • Recurring mutations found by sequencing an acute myeloid leukemia genome

      Mardis, E. R., Ding, L., Dooling, D. J., Larson, D. E., McLellan, M. D., Chen, K., Koboldt, D. C., Fulton, R. S., Delehaunty, K. D., McGrath, S. D., Fulton, L. A., Locke, D. P., Magrini, V. J., Abbott, R. M., Vickery, T. L., Reed, J. S., Robinson, J. S., Wylie, T., Smith, S. M. & Carmichael, L. & 38 others, Eldred, J. M., Harris, C. C., Walker, J., Peck, J. B., Du, F., Dukes, A. F., Sanderson, G. E., Brummett, A. M., Clark, E., McMichael, J. F., Meyer, R. J., Schindler, J. K., Pohl, C. S., Wallis, J. W., Shi, X., Lin, L., Schmidt, H., Tang, Y., Haipek, C., Wiechert, M. E., Ivy, J. V., Kalicki, J., Elliott, G., Ries, R. E., Payton, J. E., Westervelt, P., Tomasson, M. H., Watson, M. A., Baty, J., Heath, S., Shannon, W. D., Nagarajan, R., Link, D. C., Walter, M. J., Graubert, T. A., DiPersio, J. F., Wilson, R. K. & Ley, T. J., Sep 10 2009, In: New England Journal of Medicine. 361, 11, p. 1058-1066 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1913 Scopus citations

    • Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

      Girirajan, S., Chen, L., Graves, T., Marques-Bonet, T., Ventura, M., Fronick, C., Fulton, L., Rocchi, M., Fulton, R. S., Wilson, R. K., Mardis, E. R. & Eichler, E. E., Feb 2009, In: Genome research. 19, 2, p. 178-190 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      27 Scopus citations

    • The B73 maize genome: Complexity, diversity, and dynamics

      Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B. & Rock, S. M. & 137 others, Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W., Ying, K., Yeh, C. T., Emrich, S. J., Jia, Y., Kalyanaraman, A., Hsia, A. P., Barbazuk, W. B., Baucom, R. S., Brutnell, T. P., Carpita, N. C., Chaparro, C., Chia, J. M., Deragon, J. M., Estill, J. C., Fu, Y., Jeddeloh, J. A., Han, Y., Lee, H., Li, P., Lisch, D. R., Liu, S., Liu, Z., Nagel, D. H., McCann, M. C., Sanmiguel, P., Myers, A. M., Nettleton, D., Nguyen, J., Penning, B. W., Ponnala, L., Schneider, K. L., Schwartz, D. C., Sharma, A., Soderlund, C., Springer, N. M., Sun, Q., Wang, H., Waterman, M., Westerman, R., Wolfgruber, T. K., Yang, L., Yu, Y., Zhang, L., Zhou, S., Zhu, Q., Bennetzen, J. L., Dawe, R. K., Jiang, J., Jiang, N., Presting, G. G., Wessler, S. R., Aluru, S., Martienssen, R. A., Clifton, S. W., McCombie, W. R., Wing, R. A. & Wilson, R. K., Nov 20 2009, In: Science. 326, 5956, p. 1112-1115 4 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3222 Scopus citations
    • 2008

      Clinical and molecular delineation of the 17q21.31 microdeletion syndrome

      Koolen, D. A., Sharp, A. J., Hurst, J. A., Firth, H. V., Knight, S. J. L., Goldenberg, A., Saugier-Veber, P., Pfundt, R., Vissers, L. E. L. M., Destrée, A., Grisart, B., Rooms, L., Van der Aa, N., Field, M., Hackett, A., Bell, K., Nowaczyk, M. J. M., Mancini, G. M. S., Poddighe, P. J. & Schwartz, C. E. & 28 others, Rossi, E., De Gregori, M., Antonacci-Fulton, L. L., McLellan, M. D., Garrett, J. M., Wiechert, M. A., Miner, T. L., Crosby, S., Ciccone, R., Willatt, L., Rauch, A., Zenker, M., Aradhya, S., Manning, M. A., Strom, T. M., Wagenstaller, J., Krepischi-Santos, A. C., Vianna-Morgante, A. M., Rosenberg, C., Price, S. M., Stewart, H., Shaw-Smith, C., Brunner, H. G., Wilkie, A. O. M., Veltman, J. A., Zuffardi, O., Eichler, E. E. & de Vries, B. B. A., Nov 2008, In: Journal of Medical Genetics. 45, 11, p. 710-720 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      196 Scopus citations

    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways

      McLendon, R., Friedman, A., Bigner, D., Van Meir, E. G., Brat, D. J., Mastrogianakis, G. M., Olson, J. J., Mikkelsen, T., Lehman, N., Aldape, K., Yung, W. K. A., Bogler, O., Weinstein, J. N., VandenBerg, S., Berger, M., Prados, M., Muzny, D., Morgan, M., Scherer, S. & Sabo, A. & 211 others, Nazareth, L., Lewis, L., Hall, O., Zhu, Y., Ren, Y., Alvi, O., Yao, J., Hawes, A., Jhangiani, S., Fowler, G., San Lucas, A., Kovar, C., Cree, A., Dinh, H., Santibanez, J., Joshi, V., Gonzalez-Garay, M. L., Miller, C. A., Milosavljevic, A., Donehower, L., Wheeler, D. A., Gibbs, R. A., Cibulskis, K., Sougnez, C., Fennell, T., Mahan, S., Wilkinson, J., Ziaugra, L., Onofrio, R., Bloom, T., Nicol, R., Ardlie, K., Baldwin, J., Gabriel, S., Lander, E. S., Ding, L., Fulton, R. S., McLellan, M. D., Wallis, J., Larson, D. E., Shi, X., Abbott, R., Fulton, L., Chen, K., Koboldt, D. C., Wendl, M. C., Meyer, R., Tang, Y., Lin, L., Osborne, J. R., Dunford-Shore, B. H., Miner, T. L., Delehaunty, K., Markovic, C., Swift, G., Courtney, W., Pohl, C., Abbott, S., Hawkins, A., Leong, S., Haipek, C., Schmidt, H., Wiechert, M., Vickery, T., Scott, S., Dooling, D. J., Chinwalla, A., Weinstock, G. M., Mardis, E. R., Wilson, R. K., Getz, G., Winckler, W., Verhaak, R. G. W., Lawrence, M. S., O'Kelly, M., Robinson, J., Alexe, G., Beroukhim, R., Carter, S., Chiang, D., Gould, J., Gupta, S., Korn, J., Mermel, C., Mesirov, J., Monti, S., Nguyen, H., Parkin, M., Reich, M., Stransky, N., Weir, B. A., Garraway, L., Golub, T., Meyerson, M., Chin, L., Protopopov, A., Zhang, J., Perna, I., Aronson, S., Sathiamoorthy, N., Ren, G., Yao, J., Wiedemeyer, W. R., Kim, H., Sek, W. K., Xiao, Y., Kohane, I. S., Seidman, J., Park, P. J., Kucherlapati, R., Laird, P. W., Cope, L., Herman, J. G., Weisenberger, D. J., Pan, F., Van Den Berg, D., Van Neste, L., Joo, M. Y., Schuebel, K. E., Baylin, S. B., Absher, D. M., Li, J. Z., Southwick, A., Brady, S., Aggarwal, A., Chung, T., Sherlock, G., Brooks, J. D., Myers, R. M., Spellman, P. T., Purdom, E., Jakkula, L. R., Lapuk, A. V., Marr, H., Dorton, S., Yoon, G. C., Han, J., Ray, A., Wang, V., Durinck, S., Robinson, M., Wang, N. J., Vranizan, K., Peng, V., Van Name, E., Fontenay, G. V., Ngai, J., Conboy, J. G., Parvin, B., Feiler, H. S., Speed, T. P., Gray, J. W., Brennan, C., Socci, N. D., Olshen, A., Taylor, B. S., Lash, A., Schultz, N., Reva, B., Antipin, Y., Stukalov, A., Gross, B., Cerami, E., Wei, Q. W., Qin, L. X., Seshan, V. E., Villafania, L., Cavatore, M., Borsu, L., Viale, A., Gerald, W., Sander, C., Ladanyi, M., Perou, C. M., Hayes, D. N., Topal, M. D., Hoadley, K. A., Qi, Y., Balu, S., Shi, Y., Wu, J., Penny, R., Bittner, M., Shelton, T., Lenkiewicz, E., Morris, S., Beasley, D., Sanders, S., Kahn, A., Sfeir, R., Chen, J., Nassau, D., Feng, L., Hickey, E., Barker, A., Gerhard, D. S., Vockley, J., Compton, C., Vaught, J., Fielding, P., Ferguson, M. L., Schaefer, C., Zhang, J., Madhavan, S., Buetow, K. H., Collins, F., Good, P., Guyer, M., Ozenberger, B., Peterson, J. & Thomson, E., Oct 23 2008, In: Nature. 455, 7216, p. 1061-1068 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      6260 Scopus citations

    • Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

      Turnbaugh, P. J., Bäckhed, F., Fulton, L. & Gordon, J. I., Apr 17 2008, In: Cell Host and Microbe. 3, 4, p. 213-223 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2327 Scopus citations

    • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

      Ley, T. J., Mardis, E. R., Ding, L., Fulton, B., McLellan, M. D., Chen, K., Dooling, D., Dunford-Shore, B. H., McGrath, S., Hickenbotham, M., Cook, L., Abbott, R., Larson, D. E., Koboldt, D. C., Pohl, C., Smith, S., Hawkins, A., Abbott, S., Locke, D. & Hillier, L. W. & 28 others, Miner, T., Fulton, L., Magrini, V., Wylie, T., Glasscock, J., Conyers, J., Sander, N., Shi, X., Osborne, J. R., Minx, P., Gordon, D., Chinwalla, A., Zhao, Y., Ries, R. E., Payton, J. E., Westervelt, P., Tomasson, M. H., Watson, M., Baty, J., Ivanovich, J., Heath, S., Shannon, W. D., Nagarajan, R., Walter, M. J., Link, D. C., Graubert, T. A., DiPersio, J. F. & Wilson, R. K., Nov 6 2008, In: Nature. 456, 7218, p. 66-72 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1056 Scopus citations

    • Genome analysis of the platypus reveals unique signatures of evolution

      Warren, W. C., Hillier, L. D. W., Marshall Graves, J. A., Birney, E., Ponting, C. P., Grützner, F., Belov, K., Miller, W., Clarke, L., Chinwalla, A. T., Yang, S. P., Heger, A., Locke, D. P., Miethke, P., Waters, P. D., Veyrunes, F., Fulton, L., Fulton, B., Graves, T. & Wallis, J. & 82 others, Puente, X. S., López-Otín, C., Ordóñez, G. R., Eichler, E. E., Chen, L., Cheng, Z., Deakin, J. E., Alsop, A., Thompson, K., Kirby, P., Papenfuss, A. T., Wakefield, M. J., Olender, T., Lancet, D., Huttley, G. A., Smit, A. F. A., Pask, A., Temple-Smith, P., Batzer, M. A., Walker, J. A., Konkel, M. K., Harris, R. S., Whittington, C. M., Wong, E. S. W., Gemmell, N. J., Buschiazzo, E., Vargas Jentzsch, I. M., Merkel, A., Schmitz, J., Zemann, A., Churakov, G., Ole Kriegs, J., Brosius, J., Murchison, E. P., Sachidanandam, R., Smith, C., Hannon, G. J., Tsend-Ayush, E., McMillan, D., Attenborough, R., Rens, W., Ferguson-Smith, M., Lefèvre, C. M., Sharp, J. A., Nicholas, K. R., Ray, D. A., Kube, M., Reinhardt, R., Pringle, T. H., Taylor, J., Jones, R. C., Nixon, B., Dacheux, J. L., Niwa, H., Sekita, Y., Huang, X., Stark, A., Kheradpour, P., Kellis, M., Flicek, P., Chen, Y., Webber, C., Hardison, R., Nelson, J., Hallsworth-Pepin, K., Delehaunty, K., Markovic, C., Minx, P., Feng, Y., Kremitzki, C., Mitreva, M., Glasscock, J., Wylie, T., Wohldmann, P., Thiru, P., Nhan, M. N., Pohl, C. S., Smith, S. M., Hou, S., Renfree, M. B., Mardis, E. R. & Wilson, R. K., May 8 2008, In: Nature. 453, 7192, p. 175-183 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      550 Scopus citations

    • Somatic mutations affect key pathways in lung adenocarcinoma

      Ding, L., Getz, G., Wheeler, D. A., Mardis, E. R., McLellan, M. D., Cibulskis, K., Sougnez, C., Greulich, H., Muzny, D. M., Morgan, M. B., Fulton, L., Fulton, R. S., Zhang, Q., Wendl, M. C., Lawrence, M. S., Larson, D. E., Chen, K., Dooling, D. J., Sabo, A. & Hawes, A. C. & 70 others, Shen, H., Jhangiani, S. N., Lewis, L. R., Hall, O., Zhu, Y., Mathew, T., Ren, Y., Yao, J., Scherer, S. E., Clerc, K., Metcalf, G. A., Ng, B., Milosavljevic, A., Gonzalez-Garay, M. L., Osborne, J. R., Meyer, R., Shi, X., Tang, Y., Koboldt, D. C., Lin, L., Abbott, R., Miner, T. L., Pohl, C., Fewell, G., Haipek, C., Schmidt, H., Dunford-Shore, B. H., Kraja, A., Crosby, S. D., Sawyer, C. S., Vickery, T., Sander, S., Robinson, J., Winckler, W., Baldwin, J., Chirieac, L. R., Dutt, A., Fennell, T., Hanna, M., Johnson, B. E., Onofrio, R. C., Thomas, R. K., Tonon, G., Weir, B. A., Zhao, X., Ziaugra, L., Zody, M. C., Giordano, T., Orringer, M. B., Roth, J. A., Spitz, M. R., Wistuba, I. I., Ozenberger, B., Good, P. J., Chang, A. C., Beer, D. G., Watson, M. A., Ladanyi, M., Broderick, S., Yoshizawa, A., Travis, W. D., Pao, W., Province, M. A., Weinstock, G. M., Varmus, H. E., Gabriel, S. B., Lander, E. S., Gibbs, R. A., Meyerson, M. & Wilson, R. K., Oct 23 2008, In: Nature. 455, 7216, p. 1069-1075 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2291 Scopus citations

    • The canine hookworm genome: Analysis and classification of Ancylostoma caninum survey sequences

      Abubucker, S., Martin, J., Yin, Y., Fulton, L., Yang, S. P., Hallsworth-Pepin, K., Johnston, J. S., Hawdon, J., McCarter, J. P., Wilson, R. K. & Mitreva, M., Feb 2008, In: Molecular and Biochemical Parasitology. 157, 2, p. 187-192 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      35 Scopus citations

    • The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

      Dieterich, C., Clifton, S. W., Schuster, L. N., Chinwalla, A., Delehaunty, K., Dinkelacker, I., Fulton, L., Fulton, R., Godfrey, J., Minx, P., Mitreva, M., Roeseler, W., Tian, H., Witte, H., Yang, S. P., Wilson, R. K. & Sommer, R. J., Oct 2008, In: Nature Genetics. 40, 10, p. 1193-1198 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      268 Scopus citations
    • 2007

      A second generation human haplotype map of over 3.1 million SNPs

      Frazer, K. A., Ballinger, D. G., Cox, D. R., Hinds, D. A., Stuve, L. L., Gibbs, R. A., Belmont, J. W., Boudreau, A., Hardenbol, P., Leal, S. M., Pasternak, S., Wheeler, D. A., Willis, T. D., Yu, F., Yang, H., Zeng, C., Gao, Y., Hu, H., Hu, W. & Li, C. & 218 others, Lin, W., Liu, S., Pan, H., Tang, X., Wang, J., Wang, W., Yu, J., Zhang, B., Zhang, Q., Zhao, H., Zhao, H., Zhou, J., Gabriel, S. B., Barry, R., Blumenstiel, B., Camargo, A., Defelice, M., Faggart, M., Goyette, M., Gupta, S., Moore, J., Nguyen, H., Onofrio, R. C., Parkin, M., Roy, J., Stahl, E., Winchester, E., Ziaugra, L., Altshuler, D., Shen, Y., Yao, Z., Huang, W., Chu, X., He, Y., Jin, L., Liu, Y., Shen, Y., Sun, W., Wang, H., Wang, Y., Wang, Y., Xiong, X., Xu, L., Waye, M. M. Y., Tsui, S. K. W., Xue, H., Wong, J. T. F., Galver, L. M., Fan, J. B., Gunderson, K., Murray, S. S., Oliphant, A. R., Chee, M. S., Montpetit, A., Chagnon, F., Ferretti, V., Leboeuf, M., Olivier, J. F., Phillips, M. S., Roumy, S., Sallée, C., Verner, A., Hudson, T. J., Kwok, P. Y., Cai, D., Koboldt, D. C., Miller, R. D., Pawlikowska, L., Taillon-Miller, P., Xiao, M., Tsui, L. C., Mak, W., You, Q. S., Tam, P. K. H., Nakamura, Y., Kawaguchi, T., Kitamoto, T., Morizono, T., Nagashima, A., Ohnishi, Y., Sekine, A., Tanaka, T., Tsunoda, T., Deloukas, P., Bird, C. P., Delgado, M., Dermitzakis, E. T., Gwilliam, R., Hunt, S., Morrison, J., Powell, D., Stranger, B. E., Whittaker, P., Bentley, D. R., Daly, M. J., De Bakker, P. I. W., Barrett, J., Chretien, Y. R., Maller, J., McCarroll, S., Patterson, N., Pe'Er, I., Price, A., Purcell, S., Richter, D. J., Sabeti, P., Saxena, R., Schaffner, S. F., Sham, P. C., Varilly, P., Stein, L. D., Krishnan, L., Smith, A. V., Tello-Ruiz, M. K., Thorisson, G. A., Chakravarti, A., Chen, P. E., Cutler, D. J., Kashuk, C. S., Lin, S., Abecasis, G. R., Guan, W., Li, Y., Munro, H. M., Qin, Z. S., Thomas, D. J., McVean, G., Auton, A., Bottolo, L., Cardin, N., Eyheramendy, S., Freeman, C., Marchini, J., Myers, S., Spencer, C., Stephens, M., Donnelly, P., Cardon, L. R., Clarke, G., Evans, D. M., Morris, A. P., Weir, B. S., Johnson, T. A., Mullikin, J. C., Sherry, S. T., Feolo, M., Skol, A., Zhang, H., Matsuda, I., Fukushima, Y., MacEr, D. R., Suda, E., Rotimi, C. N., Adebamowo, C. A., Ajayi, I., Aniagwu, T., Marshall, P. A., Nkwodimmah, C., Royal, C. D. M., Leppert, M. F., Dixon, M., Peiffer, A., Qiu, R., Kent, A., Kato, K., Niikawa, N., Adewole, I. F., Knoppers, B. M., Foster, M. W., Clayton, E. W., Watkin, J., Muzny, D., Nazareth, L., Sodergren, E., Weinstock, G. M., Yakub, I., Birren, B. W., Wilson, R. K., Fulton, L. L., Rogers, J., Burton, J., Carter, N. P., Clee, C. M., Griffiths, M., Jones, M. C., McLay, K., Plumb, R. W., Ross, M. T., Sims, S. K., Willey, D. L., Chen, Z., Han, H., Kang, L., Godbout, M., Wallenburg, J. C., L'Archevêque, P., Bellemare, G., Saeki, K., Wang, H., An, D., Fu, H., Li, Q., Wang, Z., Wang, R., Holden, A. L., Brooks, L. D., McEwen, J. E., Guyer, M. S., Wang, V. O., Peterson, J. L., Shi, M., Spiegel, J., Sung, L. M., Zacharia, L. F., Collins, F. S., Kennedy, K., Jamieson, R. & Stewart, J., Oct 18 2007, In: Nature. 449, 7164, p. 851-861 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3694 Scopus citations

    • Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny

      Hillier, L. D. W., Miller, R. D., Baird, S. E., Chinwalla, A., Fulton, L. A., Koboldt, D. C. & Waterston, R. H., Jul 2007, In: PLoS biology. 5, 7, p. 1603-1616 14 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      134 Scopus citations

    • Comprehensive genetic variant discovery in the surfactant protein B gene

      Hamvas, A., Wegner, D. J., Carlson, C. S., Bergmann, K. R., Trusgnich, M. A., Fulton, L., Kasai, Y., An, P., Mardis, E. R., Wilson, R. K. & Cole, F. S., Aug 2007, In: Pediatric research. 62, 2, p. 170-175 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      13 Scopus citations

    • Evolution of genes and genomes on the Drosophila phylogeny

      Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H. & Anderson, W. W. & 395 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. 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      Research output: Contribution to journal › Article › peer-review

      Open Access
      1585 Scopus citations

    • Evolution of Symbiotic Bacteria in the Distal Human Intestine

      Xu, J., Mahowald, M. A., Ley, R. E., Lozupone, C. A., Hamady, M., Martens, E. C., Henrissat, B., Coutinho, P. M., Minx, P., Latreille, P., Cordum, H., Van Brunt, A., Kim, K., Fulton, R. S., Fulton, L. A., Clifton, S. W., Wilson, R. K., Knight, R. D. & Gordon, J. I., Jul 2007, In: PLoS biology. 5, 7, p. 1574-1586 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      441 Scopus citations

    • Genome-wide detection and characterization of positive selection in human populations

      Sabeti, P. C., Varilly, P., Fry, B., Lohmueller, J., Hostetter, E., Cotsapas, C., Xie, X., Byrne, E. H., McCarroll, S. A., Gaudet, R., Schaffner, S. F., Lander, E. S., Frazer, K. A., Ballinger, D. G., Cox, D. R., Hinds, D. A., Stuve, L. L., Gibbs, R. A., Belmont, J. W. & Boudreau, A. & 227 others, Hardenbol, P., Leal, S. M., Pasternak, S., Wheeler, D. A., Willis, T. D., Yu, F., Yang, H., Zeng, C., Gao, Y., Hu, H., Hu, W., Li, C., Lin, W., Liu, S., Pan, H., Tang, X., Wang, J., Wang, W., Yu, J., Zhang, B., Zhang, Q., Zhao, H., Zhao, H., Zhou, J., Gabriel, S. B., Barry, R., Blumenstiel, B., Camargo, A., Defelice, M., Faggart, M., Goyette, M., Gupta, S., Moore, J., Nguyen, H., Onofrio, R. C., Parkin, M., Roy, J., Stahl, E., Winchester, E., Ziaugra, L., Altshuler, D., Shen, Y., Yao, Z., Huang, W., Chu, X., He, Y., Jin, L., Liu, Y., Shen, Y., Sun, W., Wang, H., Wang, Y., Wang, Y., Xiong, X., Xu, L., Waye, M. M. Y., Tsui, S. K. W., Xue, H., Wong, J. T. F., Galver, L. M., Fan, J. B., Gunderson, K., Murray, S. S., Oliphant, A. R., Chee, M. S., Montpetit, A., Chagnon, F., Ferretti, V., Leboeuf, M., Olivier, J. F., Phillips, M. S., Roumy, S., Sallée, C., Verner, A., Hudson, T. J., Kwok, P. Y., Cai, D., Koboldt, D. C., Miller, R. D., Pawlikowska, L., Taillon-Miller, P., Xiao, M., Tsui, L. C., Mak, W., You, Q. S., Tam, P. K. H., Nakamura, Y., Kawaguchi, T., Kitamoto, T., Morizono, T., Nagashima, A., Ohnishi, Y., Sekine, A., Tanaka, T., Tsunoda, T., Deloukas, P., Bird, C. P., Delgado, M., Dermitzakis, E. T., Gwilliam, R., Hunt, S., Morrison, J., Powell, D., Stranger, B. E., Whittaker, P., Bentley, D. R., Daly, M. J., De Bakker, P. I. W., Barrett, J., Chretien, Y. R., Maller, J., McCarroll, S., Patterson, N., Pe'Er, I., Price, A., Purcell, S., Richter, D. J., Saxena, R., Sham, P. C., Stein, L. D., Krishnan, L., Smith, A. V., Tello-Ruiz, M. K., Thorisson, G. A., Chakravarti, A., Chen, P. E., Cutler, D. J., Kashuk, C. S., Lin, S., Abecasis, G. R., Guan, W., Li, Y., Munro, H. M., Qin, Z. S., Thomas, D. J., McVean, G., Auton, A., Bottolo, L., Cardin, N., Eyheramendy, S., Freeman, C., Marchini, J., Myers, S., Spencer, C., Stephens, M., Donnelly, P., Cardon, L. R., Clarke, G., Evans, D. M., Morris, A. P., Weir, B. S., Johnson, T. A., Mullikin, J. C., Sherry, S. T., Feolo, M., Skol, A., Zhang, H., Matsuda, I., Fukushima, Y., MacEr, D. R., Suda, E., Rotimi, C. N., Adebamowo, C. A., Ajayi, I., Aniagwu, T., Marshall, P. A., Nkwodimmah, C., Royal, C. D. M., Leppert, M. F., Dixon, M., Peiffer, A., Qiu, R., Kent, A., Kato, K., Niikawa, N., Adewole, I. F., Knoppers, B. M., Foster, M. W., Clayton, E. W., Watkin, J., Muzny, D., Nazareth, L., Sodergren, E., Weinstock, G. M., Yakub, I., Birren, B. W., Wilson, R. K., Fulton, L. L., Rogers, J., Burton, J., Carter, N. P., Clee, C. M., Griffiths, M., Jones, M. C., McLay, K., Plumb, R. W., Ross, M. T., Sims, S. K., Willey, D. L., Chen, Z., Han, H., Kang, L., Godbout, M., Wallenburg, J. C., L'Archevêque, P., Bellemare, G., Saeki, K., Wang, H., An, D., Fu, H., Li, Q., Wang, Z., Wang, R., Holden, A. L., Brooks, L. D., McEwen, J. E., Guyer, M. S., Wang, V. O., Peterson, J. L., Shi, M., Spiegel, J., Sung, L. M., Zacharia, L. F., Collins, F. S., Kennedy, K., Jamieson, R. & Stewart, J., Oct 18 2007, In: Nature. 449, 7164, p. 913-918 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1480 Scopus citations

    • Human genome ultraconserved elements are ultraselected

      Katzman, S., Kern, A. D., Bejerano, G., Fewell, G., Fulton, L., Wilson, R. K., Salama, S. R. & Haussler, D., Aug 17 2007, In: Science. 317, 5840, p. 915 1 p.

      Research output: Contribution to journal › Article › peer-review

      208 Scopus citations

    • Mutational analysis of EGFR and related signaling pathway genes in lung adenocarcinomas identifies a novel somatic kinase domain mutation in FGFR4

      Marks, J. L., McLellan, M., Zakowski, M. F., Lash, A. E., Kasai, Y., Broderick, S., Sarkaria, I. S., Pham, D. K., Singh, B., Miner, T. L., Fewell, G. A., Fulton, L. L., Mardis, E. R., Wilson, R. K., Kris, M. G., Rusch, V. W., Varmus, H. & Pao, W., May 9 2007, In: PloS one. 2, 5, e426.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      81 Scopus citations
    • 2006

      Survey sequencing of soybean elucidates the genome structure, composition and identifies novel repeats

      Nunberg, A., Bedell, J. A., Budiman, M. A., Citek, R. W., Clifton, S. W., Fulton, L., Pape, D., Cai, Z., Joshi, T., Nguyen, H., Xu, D. & Stacey, G., 2006, In: Functional Plant Biology. 33, 8, p. 765-773 9 p.

      Research output: Contribution to journal › Article › peer-review

      7 Scopus citations

    • The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: Evolution during disease progression

      Oh, J. D., Kling-Bäckhed, H., Giannakis, M., Xu, J., Fulton, R. S., Fulton, L. A., Cordum, H. S., Wang, C., Elliott, G., Edwards, J., Mardis, E. R., Engstrand, L. G. & Gordon, J. I., Jun 27 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 26, p. 9999-10004 6 p.

      Research output: Contribution to journal › Article › peer-review

      222 Scopus citations
    • 2005

      A haplotype map of the human genome

      Belmont, J. W., Boudreau, A., Leal, S. M., Hardenbol, P., Pasternak, S., Wheeler, D. A., Willis, T. D., Yu, F., Yang, H., Gao, Y., Hu, H., Hu, W., Li, C., Lin, W., Liu, S., Pan, H., Tang, X., Wang, J., Wang, W. & Yu, J. & 213 others, Zhang, B., Zhang, Q., Zhao, H., Zhou, J., Barry, R., Blumenstiel, B., Camargo, A., Defelice, M., Faggart, M., Goyette, M., Gupta, S., Moore, J., Nguyen, H., Parkin, M., Roy, J., Stahl, E., Winchester, E., Altshuler, D., Shen, Y., Yao, Z., Huang, W., Chu, X., He, Y., Jin, L., Liu, Y., Shen, Y., Sun, W., Wang, H., Wang, Y., Wang, Y., Xiong, X., Xu, L., Waye, M. M. Y., Tsui, S. K. W., Xue, H., Wong, J. T. F., Galver, L. M., Fan, J. B., Murray, S. S., Oliphant, A. R., Chee, M. S., Montpetit, A., Chagnon, F., Ferretti, V., Leboeuf, M., Olivier, J. F., Phillips, M. S., Roumy, S., Sallée, C., Verner, A., Hudson, T. J., Frazer, K. A., Ballinger, D. G., Cox, D. R., Hinds, D. A., Stuve, L. L., Kwok, P. Y., Cai, D., Koboldt, D. C., Miller, R. D., Pawlikowska, L., Taillon-Miller, P., Xiao, M., Tsui, L. C., Mak, W., Sham, P. C., Song, Y. Q., Tam, P. K. H., Nakamura, Y., Kawaguchi, T., Kitamoto, T., Morizono, T., Nagashima, A., Ohnishi, Y., Sekine, A., Tanaka, T., Deloukas, P., Bird, C. P., Delgado, M., Dermitzakis, E. T., Gwilliam, R., Hunt, S., Morrison, J., Powell, D., Stranger, B. E., Whittaker, P., Bentley, D. R., De Bakker, P. I. W., Barrett, J., Fry, B., Maller, J., McCarroll, S., Patterson, N., Pe'er, I., Purcell, S., Richter, D. J., Sabeti, P., Saxena, R., Schaffner, S. F., Varilly, P., Stein, L. D., Krishnan, L., Smith, A. V., Thorisson, G. A., Chakravarti, A., Chen, P. E., Cutler, D. J., Kashuk, C. S., Lin, S., Abecasis, G. R., Guan, W., Munro, H. M., Qin, Z. S., Thomas, D. J., McVean, G., Bottolo, L., Eyheramendy, S., Freeman, C., Marchini, J., Myers, S., Spencer, C., Stephens, M., Donnelly, P., Cardon, L. R., Clarke, G., Evans, D. M., Morris, A. P., Weir, B. S., Tsunoda, T., Mullikin, J. C., Sherry, S. T., Feolo, M., Zhang, H., Zeng, C., Zhao, H., Matsuda, I., Fukushima, Y., Macer, D. R., Suda, E., Rotimi, C. N., Adebamowo, C. A., Ajayi, I., Aniagwu, T., Marshall, P. A., Nkwodimmah, C., Royal, C. D. M., Leppert, M. F., Dixon, M., Peiffer, A., Qiu, R., Kent, A., Kato, K., Niikawa, N., Adewole, I. F., Knoppers, B. M., Foster, M. W., Clayton, E. W., Watkin, J., Gibbs, R. A., Muzny, D., Nazareth, L., Sodergren, E., Weinstock, G. M., Yakub, I., Gabriel, S. B., Onofrio, R. C., Ziaugra, L., Birren, B. W., Daly, M. J., Wilson, R. K., Fulton, L. L., Rogers, J., Burton, J., Carter, N. P., Clee, C. M., Griffiths, M., Jones, M. C., McLay, K., Plumb, R. W., Ross, M. T., Sims, S. K., Willey, D. L., Chen, Z., Han, H., Kang, L., Godbout, M., Wallenburg, J. C., L'Archevêque, P., Bellemare, G., Saeki, K., Wang, H., An, D., Fu, H., Li, Q., Wang, Z., Wang, R., Holden, A. L., Brooks, L. D., McEwen, J. E., Bird, C. R., Guyer, M. S., Nailer, P. J., Wang, V. O., Peterson, J. L., Shi, M., Spiegel, J., Sung, L. M., Witonsky, J., Zacharia, L. F., Collins, F. S., Kennedy, K., Jamieson, R. & Stewart, J., Oct 27 2005, In: Nature. 437, 7063, p. 1299-1320 22 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      4884 Scopus citations

    • Generation and annotation of the DNA sequences of human chromosomes 2 and 4

      Hillier, L. D. W., Graves, T. A., Fulton, R. S., Fulton, L. A., Pepin, K. H., Minx, P., Wagner-McPherson, C., Layman, D., Wylie, K., Sekhon, M., Becker, M. C., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E., Kremitzki, C., Oddy, L., Du, H., Sun, H. & Bradshaw-Cordum, H. & 102 others, Ali, J., Carter, J., Cordes, M., Harris, A., Isak, A., Van Brunt, A., Nguyen, C., Du, F., Courtney, L., Kalicki, J., Ozersky, P., Abbott, S., Armstrong, J., Belter, E. A., Caruso, L., Cedroni, M., Cotton, M., Davidson, T., Desai, A., Elliott, G., Erb, T., Fronick, C., Gaige, T., Haakenson, W., Haglund, K., Holmes, A., Harkins, R., Kim, K., Kruchowski, S. S., Strong, C. M., Grewal, N., Goyea, E., Hou, S., Levy, A., Martinka, S., Mead, K., McLellan, M. D., Meyer, R., Randall-Maher, J., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Shah, N., Swearengen-Shahid, S., Snider, J., Strong, J. T., Thompson, J., Yoakum, M., Leonard, S., Pearman, C., Trani, L., Radionenko, M., Waligorski, J. E., Wang, C., Rock, S. M., Tin-Wollam, A. M., Maupin, R., Latreille, P., Wendl, M. C., Yang, S. P., Pohl, C., Wallis, J. W., Spieth, J., Bieri, T. A., Berkowicz, N., Nelson, J. O., Osborne, J., Ding, L., Meyer, R., Sabo, A., Shotland, Y., Sinha, P., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Jones, T. A., She, X., Ciccarelli, F. D., Izaurralde, E., Taylor, J., Schmutz, J., Myers, R. M., Cox, D. R., Huang, X., McPherson, J. D., Mardis, E. R., Clifton, S. W., Warren, W. C., Chinwalla, A. T., Eddy, S. R., Marra, M. A., Ovcharenko, I., Furey, T. S., Miller, W., Eichler, E. E., Bork, P., Suyama, M., Torrents, D., Waterston, R. H. & Wilson, R. K., Apr 7 2005, In: Nature. 434, 7034, p. 724-731 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      79 Scopus citations

    • Initial sequence of the chimpanzee genome and comparison with the human genome

      The Chimpanzee Sequencing and Analysis Consortium, Sep 1 2005, In: Nature. 437, 7055, p. 69-87 19 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1828 Scopus citations
    • 2004

      Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid

      McClelland, M., Sanderson, K. E., Clifton, S. W., Latreille, P., Porwollik, S., Sabo, A., Meyer, R., Bieri, T., Ozersky, P., McLellan, M., Harkins, C. R., Wang, C., Nguyen, C., Berghoff, A., Elliott, G., Kohlberg, S., Strong, C., Du, F., Carter, J. & Kremizki, C. & 15 others, Layman, D., Leonard, S., Sun, H., Fulton, L., Nash, W., Miner, T., Minx, P., Delehaunty, K., Fronick, C., Magrini, V., Nhan, M., Warren, W., Florea, L., Spieth, J. & Wilson, R. K., Dec 2004, In: Nature Genetics. 36, 12, p. 1268-1274 7 p.

      Research output: Contribution to journal › Article › peer-review

      327 Scopus citations

    • EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib

      Pao, W., Miller, V., Zakowski, M., Doherty, J., Politi, K., Sarkaria, I., Singh, B., Heelan, R., Rusch, V., Fulton, L., Mardis, E., Kupfer, D., Wilson, R., Kris, M. & Varmus, H., Sep 7 2004, In: Proceedings of the National Academy of Sciences of the United States of America. 101, 36, p. 13306-13311 6 p.

      Research output: Contribution to journal › Article › peer-review

      3999 Scopus citations

    • Finishing the euchromatic sequence of the human genome

      International Human Genome Sequencing Consortium, Oct 21 2004, In: Nature. 431, 7011, p. 931-945 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3764 Scopus citations

    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

      International Chicken Genome Sequencing Consortium, Dec 9 2004, In: Nature. 432, 7018, p. 695-716 22 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2256 Scopus citations
    • 2003

      Finding functional features in Saccharomyces genomes by phylogenetic footprinting

      Cliften, P., Sudarsanam, P., Desikan, A., Fulton, L., Fulton, B., Majors, J., Waterston, R., Cohen, B. A. & Johnston, M., Jul 4 2003, In: Science. 301, 5629, p. 71-76 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      709 Scopus citations

    • Mutational profiling in the human genome

      Wilson, R. K., Ley, T. J., Cole, F. S., Milbrandt, J. D., Clifton, S., Fulton, L., Fewell, G., Minx, P., Sun, H., McLellan, M., Pohl, C. & Mardis, E. R., 2003, In: Cold Spring Harbor symposia on quantitative biology. 68, p. 23-29 7 p.

      Research output: Contribution to journal › Article › peer-review

      7 Scopus citations

    • The DNA sequence and analysis of human chromosome 14

      Heilig, R., Eckenberg, R., Petit, J. L., Fonknechten, N., Da Silva, C., Cattolico, L., Levy, M., Barbe, V., De Berardinis, V., Ureta-Vidal, A., Pelletier, E., Vico, V., Anthouard, V., Rowen, L., Madan, A., Qin, S., Sun, H., Du, H., Pepin, K. & Artiguenave, F. & 79 others, Robert, C., Cruaud, C., Brüls, T., Jalllon, O., Friedlander, L., Samson, G., Brottier, P., Cure, S., Ségurens, B., Anlère, F., Samain, S., Crespeau, H., Abbasl, N., Aiach, N., Boscus, D., Dickhoff, R., Dors, M., Dubois, I., Friedman, C., Gouyvenoux, M., James, R., Madan, A., Malrey-Estrada, B., Mangenot, S., Martins, N., Ménard, M., Oztas, S., Ratcliffe, A., Shaffer, T., Trask, B., Vacherie, B., Bellemere, C., Belser, C., Besnard-Gonnet, M., Bartol-Mavel, D., Boutard, M., Briez-Silla, S., Combette, S., Dufossé-Laurent, V., Ferron, C., Lechaplais, C., Louesse, C., Muselet, D., Magdelenat, G., Pateau, E., Petit, E., Sirvain-Trukniewicz, P., Trybou, A., Vega-Czarny, N., Bataille, E., Bluet, E., Bordelals, I., Dubois, M., Dumont, C., Guérin, T., Haffray, S., Hammadi, R., Muanga, J., Pellouin, V., Robert, D., Wunderie, E., Gauguet, G., Roy, A., Sainte-Marthe, L., Verdier, J., Verdier-Discala, C., Hillier, L. D., Fulton, L., McPherson, J., Matsuda, F., Wilson, R., Scarpelli, C., Gyapay, G., Wincker, P., Saurin, W., Quétler, F., Waterston, R., Hood, L. & Weissenbach, J., Feb 6 2003, In: Nature. 421, 6923, p. 601-607 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      91 Scopus citations

    • The DNA sequence of human chromosome 7

      Hillier, L. D. W., Fulton, R. S., Fulton, L. A., Graves, T. A., Pepin, K. H., Wagner-McPherson, C., Layman, D., Maas, J., Jaeger, S., Walker, R., Wylie, K., Sekhon, M., Becker, M. C., O'Laughlin, M. D., Schaller, M. E., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E. & Cordes, M. & 87 others, Du, H., Sun, H., Edwards, J., Bradshaw-Cordum, H., Ali, J., Andrews, S., Isak, A., Van Brunt, A., Nguyen, C., Du, F., Lamar, B., Courtney, L., Kalicki, J., Ozersky, P., Bielicki, L., Scott, K., Holmes, A., Harkins, R., Harris, A., Strong, C. M., Hou, S., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Leonard, S., Rohlfing, T., Rock, S. M., Tin-Wollam, A. M., Abbott, A., Minx, P., Maupin, R., Strowmatt, C., Latreille, P., Miller, N., Johnson, D., Murray, J., Woessner, J. P., Wendl, M. C., Yang, S. P., Schultz, B. R., Wallis, J. W., Spieth, J., Bieri, T. A., Nelson, J. O., Berkowicz, N., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Bedell, J. A., Mardis, E. R., Clifton, S. W., Chissoe, S. L., Marra, M. A., Raymond, C., Haugen, E., Gillett, W., Zhou, Y., James, R., Phelps, K., Iadanoto, S., Bubb, K., Simms, E., Levy, R., Clendenning, J., Kaul, R., Kent, W. J., Furey, T. S., Baertsch, R. A., Brent, M. R., Keibler, E., Flicek, P., Borkk, P., Suyamak, M., Bailey, J. A., Portnoy, M. E., Torrentsk, D., Chinwalla, A. T., Gish, W. R., Eddy, S. R., McPherson, J. D., Olson, M. V., Eichler, E. E., Green, E. D., Waterston, R. H. & Wilson, R. K., Jul 10 2003, In: Nature. 424, 6945, p. 157-164 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      222 Scopus citations

    • The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics

      Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D'Eustachio, P., Fitch, D. H. A., Fulton, L. A., Fulton, R. E., Griffiths-Jones, S., Harris, T. W., Hillier, L. D. W., Kamath, R. & Kuwabara, P. E. & 16 others, Mardis, E. R., Marra, M. A., Miner, T. L., Minx, P., Mullikin, J. C., Plumb, R. W., Rogers, J., Schein, J. E., Sohrmann, M., Spieth, J., Stajich, J. E., Wei, C., Willey, D., Wilson, R. K., Durbin, R. & Waterston, R. H., Nov 17 2003, In: PLoS biology. 1, 2

      Research output: Contribution to journal › Article › peer-review

      Open Access
      707 Scopus citations

    • The human genome: Genes, pseudogenes, and variation on chromosome 7

      Waterston, R. H., Hillier, L. W., Fulton, L. A., Fulton, R. S., Graves, T. A., Pepin, K. H., Bork, P., Suyama, M., Torrents, D., Chinwalla, A. T., Mardis, E. R., McPherson, J. D. & Wilson, R. K., 2003, In: Cold Spring Harbor symposia on quantitative biology. 68, p. 13-22 10 p.

      Research output: Contribution to journal › Article › peer-review

    • The international HapMap project

      Belmont, J. W., Hardenbol, P., Willis, T. D., Yu, F., Yang, H., Ch'Ang, L. Y., Huang, W., Liu, B., Shen, Y., Tam, P. K. H., Tsui, L. C., Waye, M. M. Y., Wong, J. T. F., Zeng, C., Zhang, Q., Chee, M. S., Galver, L. M., Kruglyak, S., Murray, S. S. & Oliphant, A. R. & 124 others, Montpetit, A., Chagnon, F., Ferretti, V., Leboeuf, M., Phillips, M. S., Verner, A., Duan, S., Lind, D. L., Miller, R. D., Rice, J., Saccone, N. L., Taillon-Miller, P., Xiao, M., Sekine, A., Sorimachi, K., Tanaka, Y., Tsunoda, T., Yoshino, E., Bentley, D. R., Hunt, S., Powell, D., Zhang, H., Matsuda, I., Fukushima, Y., Macer, D. R., Suda, E., Rotimi, C., Adebamowo, C. A., Aniagwu, T., Marshall, P. A., Matthew, O., Nkwodimmah, C., Royal, C. D. M., Leppert, M. F., Dixon, M., Cunningham, F., Kanani, A., Thorisson, G. A., Chen, P. E., Cutler, D. J., Kashuk, C. S., Donnelly, P., Marchini, J., McVean, G. A. T., Myers, S. R., Cardon, L. R., Morris, A., Weir, B. S., Mullikin, J. C., Feolo, M., Daly, M. J., Qiu, R., Kent, A., Dunston, G. M., Kato, K., Niikawa, N., Watkin, J., Gibbs, R. A., Sodergren, E., Weinstock, G. M., Wilson, R. K., Fulton, L. L., Rogers, J., Birren, B. W., Han, H., Wang, H., Godbout, M., Wallenburg, J. C., L'Archevêque, P., Bellemare, G., Todani, K., Fujita, T., Tanaka, S., Holden, A. L., Collins, F. S., Brooks, L. D., McEwen, J. E., Guyer, M. S., Jordan, E., Peterson, J. L., Spiegel, J., Sung, L. M., Zacharia, L. F., Kennedy, K., Dunn, M. G., Seabrook, R., Shillito, M., Skene, B., Stewart, J. G., Valle, D. L., Clayton, E. W., Jorde, L. B., Chakravarti, A., Cho, M. K., Duster, T., Foster, M. W., Jasperse, M., Knoppers, B. M., Kwok, P. Y., Licinio, J., Long, J. C., Ossorio, P., Wang, V. O., Rotimi, C. N., Spallone, P., Terry, S. F., Lander, E. S., Lai, E. H., Nickerson, D. A., Abecasis, G. R., Altshuler, D., Boehnke, M., Deloukas, P., Douglas, J. A., Gabriel, S. B., Hudson, R. R., Hudson, T. J., Kruglyak, L., Nakamura, Y., Nussbaum, R. L., Schaffner, S. F., Sherry, S. T., Stein, L. D. & Tanaka, T., Dec 18 2003, In: Nature. 426, 6968, p. 789-796 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5141 Scopus citations

    • The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

      Skaletsky, H., Kuroda-Kawaguchl, T., Minx, P. J., Cordum, H. S., Hlllier, L. D., Brown, L. G., Repplng, S., Pyntikova, T., All, J., Blerl, T., Chinwalla, A., Delehaunty, A., Du, H., Fewell, G., Fulton, L., Fulton, R., Graves, T., Hou, S. F., Latrielle, P. & Leonard, S. & 19 others, Mardis, E., Maupin, R., McPherson, J., Miner, T., Nash, W., Nguyen, C., Ozersky, P., Pepin, K., Rock, S., Rohlfing, T., Scott, K., Schultz, B., Strong, C., Tin-Wollam, A., Yang, S. P., Waterston, R. H., Wllson, R. K., Rozen, S. & Page, D. C., Jun 19 2003, In: Nature. 423, 6942, p. 825-837 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1703 Scopus citations
    • 2002

      Initial sequencing and comparative analysis of the mouse genome

      Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T. & Bork, P. & 202 others, Botcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigó, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., LaHillier, D. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., Karlsson, E. K., Karolchik, D., Kasprzyk, A., Kawai, J., Keibler, E., Kells, C., Kent, W. J., Kirby, A., Kolbe, D. L., Korf, I., Kucherlapati, R. S., Kulbokas, E. J., Kulp, D., Landers, T., Leger, J. P., Leonard, S., Letunic, I., Levine, R., Li, J., Li, M., Lloyd, C., Lucas, S., Ma, B., Maglott, D. R., Mardis, E. R., Matthews, L., Mauceli, E., Mayer, J. H., McCarthy, M., McCombie, W. R., McLaren, S., McLay, K., McPherson, J. D., Meldrim, J., Meredith, B., Mesirov, J. P., Miller, W., Miner, T. L., Mongin, E., Montgomery, K. T., Morgan, M., Mott, R., Mullikin, J. C., Muzny, D. M., Nash, W. E., Nelson, J. O., Nhan, M. N., Nicol, R., Ning, Z., Nusbaum, C., O'Connor, M. J., Okazaki, Y., Oliver, K., Overton-Larty, E., Pachter, L., Parra, G., Pepin, K. H., Peterson, J., Pevzner, P., Plumb, R., Pohl, C. S., Poliakov, A., Ponce, T. C., Ponting, C. P., Potter, S., Quail, M., Reymond, A., Roe, B. A., Roskin, K. M., Rubin, E. M., Rust, A. G., Santos, R., Sapojnikov, V., Schultz, B., Schultz, J., Schwartz, M. S., Schwartz, S., Scott, C., Seaman, S., Searle, S., Sharpe, T., Sheridan, A., Shownkeen, R., Sims, S., Singer, J. B., Slater, G., Smit, A., Smith, D. R., Spencer, B., Stabenau, A., Stange-Thomann, N., Sugnet, C., Suyama, M., Tesler, G., Thompson, J., Torrents, D., Trevaskis, E., Tromp, J., Ucla, C., Ureta-Vidal, A., Vinson, J. P., von Niederhausern, A. C., Wade, C. M., Wall, M., Weber, R. J., Weiss, R. B., Wendl, M. C., West, A. P., Wetterstrand, K., Wheeler, R., Whelan, S., Wierzbowski, J., Willey, D., Williams, S., Wilson, R. K., Winter, E., Worley, K. C., Wyman, D., Yang, S., Yang, S. P., Zdobnov, E. M., Zody, M. C. & Lander, E. S., Dec 5 2002, In: Nature. 420, 6915, p. 520-562 43 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5658 Scopus citations
    • 2001

      A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms

      The International SNP Map Working Group, Feb 15 2001, In: Nature. 409, 6822, p. 928-933 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2566 Scopus citations

    • Initial sequencing and analysis of the human genome

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      Open Access
      18899 Scopus citations

    • Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis

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      Research output: Contribution to journal › Article › peer-review

      Open Access
      206 Scopus citations