Research output per year
Research output per year
- 1 - 50 out of 96 results
Search results
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2023
Combining simulations and single-molecule fluorescence spectroscopy to understand SARS-CoV-2 nucleocapsid protein RNA interaction
Alston, J. J., Cubuk, J., Incicco, J., Stuchell-Brereton, M. D., Hall, K. B., Holehouse, A. S. & Soranno, A., Feb 10 2023, In: Biophysical Journal. 122, 3S1, p. 202aResearch output: Contribution to journal › Article › peer-review
Open Access -
Excluded Volume and Weak Interactions in Crowded Solutions Modulate Conformations and RNA Binding of an Intrinsically Disordered Tail
Stringer, M. A., Cubuk, J., Incicco, J. J., Roy, D., Hall, K. B., Stuchell-Brereton, M. D. & Soranno, A., Jul 6 2023, In: Journal of Physical Chemistry B. 127, 26, p. 5837-5849 13 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Single-molecule spectroscopy of the SARS-CoV-2 nucleocapsid protein
Cubuk, J., Incicco, J., Alston, J. J., Hall, K. B., Stuchell-Brereton, M. D. & Soranno, A., Feb 10 2023, In: Biophysical Journal. 122, 3S1, p. 200aResearch output: Contribution to journal › Article › peer-review
Open Access -
2021
Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles
Bernetti, M., Hall, K. B. & Bussi, G., Aug 20 2021, In: Nucleic acids research. 49, 14, e84.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA
Cubuk, J., Alston, J. J., Incicco, J. J., Singh, S., Stuchell-Brereton, M. D., Ward, M. D., Zimmerman, M. I., Vithani, N., Griffith, D., Wagoner, J. A., Bowman, G. R., Hall, K. B., Soranno, A. & Holehouse, A. S., Dec 1 2021, In: Nature communications. 12, 1, 1936.Research output: Contribution to journal › Article › peer-review
Open Access218 Scopus citations -
2020
Ribosomal Protein L11 Selectively Stabilizes a Tertiary Structure of the GTPase Center rRNA Domain
Welty, R., Rau, M., Pabit, S., Dunstan, M. S., Conn, G. L., Pollack, L. & Hall, K. B., Feb 14 2020, In: Journal of Molecular Biology. 432, 4, p. 991-1007 17 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
2019
Economics and Politics of Publishing in Our Mission-Driven Society
Dyson, H. J., Hall, K. B. & Piston, D. W., May 21 2019, In: Biophysical Journal. 116, 10, p. E1-E2Research output: Contribution to journal › Editorial
Open Access -
2018
Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure
Welty, R., Pabit, S. A., Katz, A. M., Calvey, G. D., Pollack, L. & Hall, K. B., Dec 2018, In: RNA. 24, 12, p. 1828-1838 11 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
Molecular principles underlying dual RNA specificity in the Drosophila SNF protein
Weber, G., Dekoster, G. T., Holton, N., Hall, K. B. & Wahl, M. C., Dec 1 2018, In: Nature communications. 9, 1, 2220.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
2017
Computational assessment of potassium and magnesium ion binding to a buried pocket in GT pase-associating center RNA
Hayatshahi, H. S., Roe, D. R., Galindo-Murillo, R., Hall, K. B. & CheathamIII, T. E., Jan 26 2017, In: Journal of Physical Chemistry B. 121, 3, p. 451-462 12 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
RNA and Proteins: Mutual Respect
Hall, K. B., 2017, In: F1000Research. 6, 345.Research output: Contribution to journal › Review article › peer-review
Open Access8 Scopus citations -
2016
Divalent ion dependent conformational changes in an RNA stem-loop observed by molecular dynamics
Bergonzo, C., Hall, K. B. & Cheatham, T. E., Jul 12 2016, In: Journal of Chemical Theory and Computation. 12, 7, p. 3382-3389 8 p.Research output: Contribution to journal › Article › peer-review
Open Access40 Scopus citations -
Nucleobases Undergo Dynamic Rearrangements during RNA Tertiary Folding
Welty, R. & Hall, K. B., Nov 6 2016, In: Journal of Molecular Biology. 428, 22, p. 4490-4502 13 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
2015
2-aminopurine fluorescence as a probe of local RNA structure and dynamics and global folding
Rau, M. J. & Hall, K. B., 2015, Methods in Enzymology. 1 ed. Academic Press Inc., p. 99-124 26 p. (Methods in Enzymology; vol. 558, no. 1).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
5 Scopus citations -
Effect of Loop Composition on the Stability and Folding Kinetics of RNA Hairpins with Large Loops
Melnykov, A. V., Nayak, R. K., Hall, K. B. & Van Orden, A., Mar 17 2015, In: Biochemistry. 54, 10, p. 1886-1896 11 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Formation of Tertiary Interactions during rRNA GTPase Center Folding
Rau, M. J., Welty, R., Tom Stump, W. & Hall, K. B., Aug 17 2015, In: Journal of Molecular Biology. 427, 17, p. 2799-2815 17 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
Mighty tiny
Hall, K. B., Apr 1 2015, In: RNA. 21, 4, p. 630-631 2 p.Research output: Contribution to journal › Short survey › peer-review
Open Access15 Scopus citations -
Stem-Loop v of Varkud Satellite RNA Exhibits Characteristics of the Mg2+ Bound Structure in the Presence of Monovalent Ions
Bergonzo, C., Hall, K. B. & Cheatham, T. E., Sep 24 2015, In: Journal of Physical Chemistry B. 119, 38, p. 12355-12364 10 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
2014
A compare-and-contrast NMR dynamics study of two related RRMs: U1A and SNF
Dekoster, G. T., Delaney, K. J. & Hall, K. B., Jul 1 2014, In: Biophysical Journal. 107, 1, p. 208-219 12 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Binding affinity and cooperativity control U2B″/snRNA/U2A′ RNP formation
Williams, S. G. & Hall, K. B., Jun 17 2014, In: Biochemistry. 53, 23, p. 3727-3737 11 p.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
Climbing the vertebrate branch of U1A/U2B″ protein evolution
Delaney, K. J., Williams, S. G., Lawler, M. & Hall, K. B., Jul 2014, In: RNA. 20, 7, p. 1035-1045 11 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Linkage and allostery in snRNP protein/RNA complexes
Williams, S. G. & Hall, K. B., Jun 10 2014, In: Biochemistry. 53, 22, p. 3529-3539 11 p.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
Molecular biology: Protein binding cannot subdue a lively RNA
Hall, K. B., 2014, In: Nature. 506, 7488, p. 303-304 2 p.Research output: Contribution to journal › Comment/debate
Open Access2 Scopus citations -
2013
Resurrection of an urbilaterian U1A/U2B″/SNF protein
Williams, S. G., Harms, M. J. & Hall, K. B., Oct 23 2013, In: Journal of Molecular Biology. 425, 20, p. 3846-3862 17 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
RNA does the folding dance of twist, turn, stack
Hall, K. B., Oct 15 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 42, p. 16706-16707 2 p.Research output: Contribution to journal › Comment/debate
5 Scopus citations -
The RNA recognition motif and messenger RNA
Hall, K. B., Jan 1 2013, Biophysics of RNA Folding. Springer New York, p. 89-116 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2012
Effect of protein binding on RNA folding
Hall, K. B., Dec 1 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 3. p. 317-335 19 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Intrinsic flexibility of snRNA hairpin loops facilitates protein binding
Rau, M., Stump, W. T. & Hall, K. B., Nov 2012, In: RNA. 18, 11, p. 1984-1995 12 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Millisecond time-scale folding and unfolding of DNA hairpins using rapid-mixing stopped-flow kinetics
Nayak, R. K., Peersen, O. B., Hall, K. B. & Van Orden, A., Feb 8 2012, In: Journal of the American Chemical Society. 134, 5, p. 2453-2456 4 p.Research output: Contribution to journal › Article › peer-review
36 Scopus citations -
Spectroscopic probes of RNA structure and dynamics
Hall, K. B., 2012, Spectroscopic Methods of Analysis: Methods and Protocols. Humana Press Inc., p. 67-84 18 p. (Methods in Molecular Biology; vol. 875).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
7 Scopus citations -
2011
Human U2B″ protein binding to snRNA stemloops
Williams, S. G. & Hall, K. B., Nov 2011, In: Biophysical Chemistry. 159, 1, p. 82-89 8 p.Research output: Contribution to journal › Article › peer-review
13 Scopus citations -
2010
A natural missing link between activated and downhill protein folding scenarios
Liu, F., Maynard, C., Scott, G., Melnykov, A., Hall, K. B. & Gruebele, M., 2010, In: Physical Chemistry Chemical Physics. 12, 14, p. 3542-3549 8 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Coevolution of drosophila snf protein and its snrna targets
Williams, S. G. & Hall, K. B., Jun 8 2010, In: Biochemistry. 49, 22, p. 4571-4582 12 p.Research output: Contribution to journal › Article › peer-review
13 Scopus citations -
Interactions between PTB RRMs Induce Slow Motions and Increase RNA Binding Affinity
Maynard, C. M. & Hall, K. B., Mar 19 2010, In: Journal of Molecular Biology. 397, 1, p. 260-277 18 p.Research output: Contribution to journal › Article › peer-review
16 Scopus citations -
2009
2-aminopurine as a probe of RNA conformational transitions.
Hall, K. B., 2009, In: Methods in enzymology. 469, p. 269-285 17 p.Research output: Contribution to journal › Article › peer-review
39 Scopus citations -
Revival of high-order fluorescence correlation analysis: Generalized theory and biochemical applications
Melnykov, A. V. & Hall, K. B., Nov 26 2009, In: Journal of Physical Chemistry B. 113, 47, p. 15629-15638 10 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
The domains of polypyrimidine tract binding protein have distinct RNA structural preferences
Clerte, C. & Hall, K. B., Mar 17 2009, In: Biochemistry. 48, 10, p. 2063-2074 12 p.Research output: Contribution to journal › Article › peer-review
32 Scopus citations -
2008
RNA in motion
Hall, K. B., Dec 2008, In: Current Opinion in Chemical Biology. 12, 6, p. 612-618 7 p.Research output: Contribution to journal › Review article › peer-review
48 Scopus citations -
2007
The intricate world of riboswitches
Coppins, R. L., Hall, K. B. & Groisman, E. A., Apr 2007, In: Current Opinion in Microbiology. 10, 2, p. 176-181 6 p.Research output: Contribution to journal › Review article › peer-review
113 Scopus citations -
2006
Characterization of multimeric complexes formed by the human PTB1 protein on RNA
Clerte, C. & Hall, K. B., Mar 2006, In: RNA. 12, 3, p. 457-475 19 p.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
2005
Correlated motions in the U1 snRNA stem/loop 2:U1A RBD1 complex
Showalter, S. A. & Hall, K. B., Sep 2005, In: Biophysical Journal. 89, 3, p. 2046-2058 13 p.Research output: Contribution to journal › Article › peer-review
Open Access30 Scopus citations -
Iron responsive element RNA flexibility described by NMR and isotropic reorientational eigenmode dynamics
Showalter, S. A., Baker, N. A., Tang, C. & Hall, K. B., Jul 2005, In: Journal of Biomolecular NMR. 32, 3, p. 179-193 15 p.Research output: Contribution to journal › Article › peer-review
29 Scopus citations -
Isotropic reorientational eigenmode dynamics complements NMR relaxation measurements for RNA
Showalter, S. A. & Hall, K. B., 2005, In: Methods in enzymology. 394, p. 465-480 16 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
2004
Altering the RNA-binding Mode of the U1A RBD1 Protein
Showalter, S. A. & Hall, K. B., Jan 9 2004, In: Journal of Molecular Biology. 335, 2, p. 465-480 16 p.Research output: Contribution to journal › Article › peer-review
32 Scopus citations -
Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations
Hall, K. B. & Williams, D. J., Jan 2004, In: RNA. 10, 1, p. 34-47 14 p.Research output: Contribution to journal › Article › peer-review
Open Access47 Scopus citations -
Global and local dynamics of the U1A Polyadenylation Inhibition Element (PIE) RNA and PIE RNA-U1A complexes
Clerte, C. & Hall, K. B., Oct 26 2004, In: Biochemistry. 43, 42, p. 13404-13415 12 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Stacking-unstacking dynamics of oligodeoxynucleotide trimers
Jean, J. M. & Hall, K. B., Aug 10 2004, In: Biochemistry. 43, 31, p. 10277-10284 8 p.Research output: Contribution to journal › Article › peer-review
55 Scopus citations -
2002
2-Aminopurine electronic structure and fluorescence properties in DNA
Jean, J. M. & Hall, K. B., Nov 5 2002, In: Biochemistry. 41, 44, p. 13152-13161 10 p.Research output: Contribution to journal › Article › peer-review
105 Scopus citations -
A functional role for correlated motion in the N-terminal RNA-binding domain of human U1A protein
Showalter, S. A. & Hall, K. B., 2002, In: Journal of Molecular Biology. 322, 3, p. 533-542 10 p.Research output: Contribution to journal › Article › peer-review
40 Scopus citations -
RNA-protein interactions
Hall, K. B., Jun 1 2002, In: Current Opinion in Structural Biology. 12, 3, p. 283-288 6 p.Research output: Contribution to journal › Review article › peer-review
75 Scopus citations