Personal profile
Research interests
Our laboratory uses computational methods to help discover new medicines and new uses for existing methods. We do this by mining large databases of small-molecule screening data for clues about how molecules might behave in unexpected ways. In particular, the data from phenotypic screens, that look at how molecules change the behavior of cells screens we place special focus on.
Available to Mentor:
- PhD Students
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Collaborations and top research areas from the last five years
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Superior transplant recipient outcome prediction and pathology assessment using rapid deep learning applied to procurement kidney biopsies
Gaut, J. P., Marsh, J. N., Chen, L., Zhang, F., Yu, X., Wilson, P., Liu, T. C. & Swamidass, S. J., Dec 2026, In: Scientific reports. 16, 1, 1921.Research output: Contribution to journal › Article › peer-review
Open Access -
Domain Knowledge Inclusive Monotonic Neural Network Guides Patient-Specific Induction of General Anesthesia Dosing
Sarullo, K., Samad, M., Kendale, S., Baldi, P. & Swamidass, S. J., Aug 1 2025, In: A&A practice. 19, 8, p. e02034Research output: Contribution to journal › Article › peer-review
Open Access -
Development of a deep learning algorithm for Paneth cell density quantification for inflammatory bowel disease
Kang, L. I., Sarullo, K., Marsh, J. N., Lu, L., Khonde, P., Ma, C., Haritunians, T., Mujukian, A., Mengesha, E., McGovern, D. P. B., Stappenbeck, T. S., Swamidass, S. J. & Liu, T. C., Dec 2024, In: EBioMedicine. 110, 105440.Research output: Contribution to journal › Article › peer-review
Open Access5 Link opens in a new tab Scopus citations -
GAiN: An integrative tool utilizing generative adversarial neural networks for augmented gene expression analysis
Waters, M. R., Inkman, M., Jayachandran, K., Kowalchuk, R. M., Robinson, C., Schwarz, J. K., Swamidass, S. J., Griffith, O. L., Szymanski, J. J. & Zhang, J., Feb 9 2024, In: Patterns. 5, 2, 100910.Research output: Contribution to journal › Article › peer-review
Open Access8 Link opens in a new tab Scopus citations -
Role of Artificial Intelligence in Kidney Pathology: Promises and Pitfalls
Goodman, K., Sarullo, K., Swamidass, S. J., Gaut, J. P. & Jain, S., Jul 1 2024, In: Kidney360. 5, 7, p. 1044-1046 3 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Link opens in a new tab Scopus citations