Joshua Swamidass

Associate Professor of Pathology and Immunology, Associate Professor of Biomedical Engineering

    • 2523 Citations
    20052020

    Research output per year

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    Personal profile

    Research interests

    Our laboratory uses computational methods to help discover new medicines and new uses for existing methods. We do this by mining large databases of small-molecule screening data for clues about how molecules might behave in unexpected ways. In particular, the data from phenotypic screens, that look at how molecules change the behavior of cells screens we place special focus on.

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    Research Output

    Deep learning quantification of percent steatosis in donor liver biopsy frozen sections

    Sun, L., Marsh, J. N., Matlock, M. K., Chen, L., Gaut, J. P., Brunt, E. M., Swamidass, S. J. & Liu, T. C., Oct 2020, In : EBioMedicine. 60, 103029.

    Research output: Contribution to journalArticle

    Open Access
  • The Metabolic Rainbow: Deep Learning Phase i Metabolism in Five Colors

    Dang, N. L., Matlock, M. K., Hughes, T. B. & Swamidass, S. J., Jan 1 2020, (Accepted/In press) In : Journal of Chemical Information and Modeling.

    Research output: Contribution to journalArticle

  • 2 Scopus citations

    XenoNet: Inference and Likelihood of Intermediate Metabolite Formation

    Flynn, N. R., Dang, N. L., Ward, M. D. & Swamidass, S. J., Jul 27 2020, In : Journal of Chemical Information and Modeling. 60, 7, p. 3431-3449 19 p.

    Research output: Contribution to journalArticle

  • Accounting for proximal variants improves neoantigen prediction

    Hundal, J., Kiwala, S., Feng, Y. Y., Liu, C. J., Govindan, R., Chapman, W. C., Uppaluri, R., Swamidass, S. J., Griffith, O. L., Mardis, E. R. & Griffith, M., Jan 1 2019, In : Nature Genetics. 51, 1, p. 175-179 5 p.

    Research output: Contribution to journalArticle

  • 16 Scopus citations

    A time-embedding network models the ontogeny of 23 hepatic drug metabolizing enzymes

    Matlock, M. K., Tambe, A., Elliott-Higgins, J., Hines, R. N., Miller, G. P. & Swamidass, S. J., Aug 19 2019, In : Chemical Research in Toxicology. 32, 8, p. 1707-1721 15 p.

    Research output: Contribution to journalArticle