Joseph Gaut

2024

A Case of Congenital Nephrotic Syndrome with Crescents Caused by a Novel Compound Heterozygous Pairing of NPHS1 Genetic Variants

Goodman, K. N., Puapatanakul, P., Barton, K. T., He, M., Miner, J. H. & Gaut, J. P., 2024, In: Case Reports in Nephrology. 2024, 5121375.

Research output: Contribution to journal › Article › peer-review

Open Access

Association of COVID-19 Versus COVID-19 Vaccination With Kidney Function and Disease Activity in Primary Glomerular Disease: A Report of the Cure Glomerulonephropathy Study

Cure Glomerulonephropathy (CureGN) Study Consortium, Dharnidharka, V., Gaut, J. & Brathwaite, K., Jan 2024, In: American Journal of Kidney Diseases. 83, 1, p. 37-46 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Mapping human tissues with highly multiplexed RNA in situ hybridization

Kalhor, K., Chen, C. J., Lee, H. S., Cai, M., Nafisi, M., Que, R., Palmer, C. R., Yuan, Y., Zhang, Y., Li, X., Song, J., Knoten, A., Lake, B. B., Gaut, J. P., Keene, C. D., Lein, E., Kharchenko, P. V., Chun, J., Jain, S. & Fan, J. B. & 1 others, Zhang, K., Dec 2024, In: Nature communications. 15, 1, 2511.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Molecular Signatures of Glomerular Neovascularization in a Patient with Diabetic Kidney Disease

Kidney Precision Medicine Project, Feb 2024, In: Clinical Journal of the American Society of Nephrology. 19, 2, p. 266-275 10 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project

Kidney Precision Medicine Project, Mar 2024, In: American Journal of Kidney Diseases. 83, 3, p. 402-410 9 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Role of Artificial Intelligence in Kidney Pathology: Promises and Pitfalls

Goodman, K., Sarullo, K., Swamidass, S. J., Gaut, J. P. & Jain, S., Jul 1 2024, In: Kidney360. 5, 7, p. 1044-1046 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

The chromatin landscape of healthy and injured cell types in the human kidney

Gisch, D. L., Brennan, M., Lake, B. B., Basta, J., Keller, M. S., Melo Ferreira, R., Akilesh, S., Ghag, R., Lu, C., Cheng, Y. H., Collins, K. S., Parikh, S. V., Rovin, B. H., Robbins, L., Stout, L., Conklin, K. Y., Diep, D., Zhang, B., Knoten, A. & Barwinska, D. & 333 others, Asghari, M., Sabo, A. R., Ferkowicz, M. J., Sutton, T. A., Kelly, K. J., De Boer, I. H., Rosas, S. E., Kiryluk, K., Hodgin, J. B., Alakwaa, F., Winfree, S., Jefferson, N., Türkmen, A., Gaut, J. P., Gehlenborg, N., Phillips, C. L., El-Achkar, T. M., Dagher, P. C., Hato, T., Zhang, K., Himmelfarb, J., Kretzler, M., Mollah, S., Lake, B., Morales, A., Stillman, I., Lecker, S., Bogen, S., Verma, A., Yu, G., Schmidt, I., Henderson, J., Beck, L., Yadati, P., Waikar, S., Amodu, A. A., Maikhor, S., Ilori, T., Colona, M. R., Weins, A., McMahon, G., Hacohen, N., Greka, A., Marshall, J. L., Hoover, P. J., Viswanathan, V. S., Crawford, D., Aulisio, M., Bush, W., Chen, Y., Madabhushi, A., O’Malley, C., Gadegbeku, C., Sendrey, D., Poggio, E., O’Toole, J., Sedor, J., Taliercio, J., Bush, L., Herlitz, L., Palmer, E., Nguyen, J., Spates-Harden, K., Cooperman, L., Jolly, S., Vinovskis, C., Bomback, A., Barasch, J., Kiryluk, K., Appelbaum, P., D’Agati, V., Berrouet, C., Mehl, K., Sabatello, M., Shang, N., Balderes, O., Canetta, P. A., Kudose, S., de Pinho Gonçalves, J., Migas, L., Van de Plas, R., Lardenoije, R., Barisoni, L., Rennke, H., Verdoes, A., Sabo, A., Gisch, D. L., Williams, J., Kelly, K., Dunn, K., Eadon, M., Ferkowicz, M., Dagher, P., Winfree, S., Bledsoe, S., Wofford, S., (El-Achkar), T. A., Sutton, T., Bowen, W., Slade, A., Record, E., Cheng, Y., Jain, Y., Herr, B., Quardokus, E., Wang, A., Villalobos, C. P. C., Parikh, C., Atta, M., Menez, S., Wen, Y., Xu, A., Bernard, L., Johansen, C., Chen, S., Rosas, S., Donohoe, I., Sun, J., Knight, R., Shpigel, A., Bebiak, J., Saul, J., Ardayfio, J., Koewler, R., Pinkeney, R., Campbell, T., Azeloglu, E., Nadkarni, G., He, J., Tokita, J., Campbell, K., Patel, M., Lefferts, S., Iyengar, S. R., Ward, S., Coca, S., He, C., Xiong, Y., Prasad, P., Rovin, B., Shapiro, J. P., Parikh, S., Madhavan, S. M., Lukowski, J., Velickovic, D., Pasa-Tolic, L., Oliver, G., Troyanskaya, O., Sealfon, R., Mao, W., Wong, A., Pollack, A., Goltsev, Y., Ginley, B., Lutnick, B., Nolan, G., Anjani, K., Mukatash, T., Laszik, Z. G., Campos, B., Thajudeen, B., Beyda, D., Bracamonte, E., Brosius, F., Woodhead, G., Mendoza, K., Marquez, N., Scott, R., Tsosie, R., Saunders, M., Rike, A., Woodle, E. S., Lee, P. J., Alloway, R. R., Shi, T., Hsieh, E., Kendrick, J., Thurman, J., Wrobel, J., Pyle, L., Bjornstad, P., Lucarelli, N., Sarder, P., Renteria, A., Ricardo, A., Srivastava, A., Redmond, D., Carmona-Powell, E., Bui, J., Lash, J., Fox, M., Meza, N., Gaba, R., Setty, S., Kelly, T., Lienczewski, C., Demeke, D., Otto, E., Ascani, H., Hodgin, J., Schaub, J., Hartman, J., Mariani, L., Bitzer, M., Rose, M., Bonevich, N., Conser, N., McCown, P., Dull, R., Menon, R., Reamy, R., Eddy, S., Balis, U., Blanc, V., Nair, V., He, Y. O., Wright, Z., Steck, B., Luo, J., Frey, R., Coleman, A., Henderson-Brown, D., Berge, J., Caramori, M. L., Adeyi, O., Nachman, P., Safadi, S., Flanagan, S., Ma, S., Klett, S., Wolf, S., Harindhanavudhi, T., Rao, V., Mottl, A., Froment, A., Zeitler, E., Bream, P., Kelley, S., Rosengart, M., Elder, M., Palevsky, P., Murugan, R., Hall, D. E., Bender, F., Winters, J., Kellum, J. A., Gilliam, M., Tublin, M., Tan, R., Zhang, G., Sharma, K., Venkatachalam, M., Hendricks, A., Kermani, A., Torrealba, J., Vazquez, M., Wang, N., Cai, Q., Miller, R. T., Ma, S., Hedayati, S., Hoofnagle, A., Wangperawong, A., Berglund, A., Dighe, A. L., Young, B., Larson, B., Berry, B., Alpers, C., Limonte, C., Stutzke, C., Roberts, G., de Boer, I., Snyder, J., Phuong, J., Carson, J., Rezaei, K., Tuttle, K., Brown, K., Blank, K., Sarkisova, N., Jefferson, N., McClelland, R., Mooney, S., Nam, Y., Wilcox, A., Park, C., Dowd, F., Williams, K., Grewenow, S. M., Daniel, S., Shankland, S., Pamreddy, A., Ye, H., Montellano, R., Bansal, S., Pillai, A., Zhang, D., Park, H., Patel, J., Sambandam, K., Basit, M., Wen, N., Moe, O. W., Toto, R. D., Lee, S. C., Sharman, K., Caprioli, R. M., Fogo, A., Allen, J., Spraggins, J., Djambazova, K., de Caestecker, M., Dufresne, M., Farrow, M., Vijayan, A., Minor, B., Nwanne, G., Gaut, J., Conlon, K., Kaushal, M., Diettman, S. M., Victoria Castro, A. M., Moledina, D., Wilson, F. P., Moeckel, G., Cantley, L., Shaw, M., Kakade, V., Arora, T., Jain, S., Rauchman, M. & Eadon, M. T., Dec 2024, In: Nature communications. 15, 1, 433.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

2023

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Jain, S., Pei, L., Spraggins, J. M., Angelo, M., Carson, J. P., Gehlenborg, N., Ginty, F., Gonçalves, J. P., Hagood, J. S., Hickey, J. W., Kelleher, N. L., Laurent, L. C., Lin, S., Lin, Y., Liu, H., Naba, A., Nakayasu, E. S., Qian, W. J., Radtke, A. & Robson, P. & 464 others, Stockwell, B. R., Van de Plas, R., Vlachos, I. S., Zhou, M., Ahn, K. J., Allen, J., Anderson, D. M., Anderton, C. R., Curcio, C., Angelin, A., Arvanitis, C., Atta, L., Awosika-Olumo, D., Bahmani, A., Bai, H., Balderrama, K., Balzano, L., Bandyopadhyay, G., Bandyopadhyay, S., Bar-Joseph, Z., Barnhart, K., Barwinska, D., Becich, M., Becker, L., Becker, W., Bedi, K., Bendall, S., Benninger, K., Betancur, D., Bettinger, K., Billings, S., Blood, P., Bolin, D., Border, S., Bosse, M., Bramer, L., Brewer, M., Brusko, M., Bueckle, A., Burke, K., Burnum-Johnson, K., Butcher, E., Butterworth, E., Cai, L., Calandrelli, R., Caldwell, M., Campbell-Thompson, M., Cao, D., Cao-Berg, I., Caprioli, R., Caraccio, C., Caron, A., Carroll, M., Chadwick, C., Chen, A., Chen, D., Chen, F., Chen, H., Chen, J., Chen, L., Chen, L., Chiacchia, K., Cho, S., Chou, P., Choy, L., Cisar, C., Clair, G., Clarke, L., Clouthier, K. A., Colley, M. E., Conlon, K., Conroy, J., Contrepois, K., Corbett, A., Corwin, A., Cotter, D., Courtois, E., Cruz, A., Csonka, C., Czupil, K., Daiya, V., Dale, K., Davanagere, S. A., Dayao, M., de Caestecker, M. P., Decker, A., Deems, S., Degnan, D., Desai, T., Deshpande, V., Deutsch, G., Devlin, M., Diep, D., Dodd, C., Donahue, S., Dong, W., dos Santos Peixoto, R., Duffy, M., Dufresne, M., Duong, T. E., Dutra, J., Eadon, M. T., El-Achkar, T. M., Enninful, A., Eraslan, G., Eshelman, D., Espin-Perez, A., Esplin, E. D., Esselman, A., Falo, L. D., Falo, L., Fan, J., Fan, R., Farrow, M. A., Farzad, N., Favaro, P., Fermin, J., Filiz, F., Filus, S., Fisch, K., Fisher, E., Fisher, S., Flowers, K., Flynn, W. F., Fogo, A. B., Fu, D., Fulcher, J., Fung, A., Furst, D., Gallant, M., Gao, F., Gao, Y., Gaulton, K., Gaut, J. P., Gee, J., Ghag, R. R., Ghazanfar, S., Ghose, S., Gisch, D., Gold, I., Gondalia, A., Gorman, B., Greenleaf, W., Greenwald, N., Gregory, B., Guo, R., Gupta, R., Hakimian, H., Haltom, J., Halushka, M., Han, K. S., Hanson, C., Harbury, P., Hardi, J., Harlan, L., Harris, R. C., Hartman, A., Heidari, E., Helfer, J., Helminiak, D., Hemberg, M., Henning, N., Herr, B. W., Ho, J., Holden-Wiltse, J., Hong, S. H., Hong, Y. K., Honick, B., Hood, G., Hu, P., Hu, Q., Huang, M., Huyck, H., Imtiaz, T., Isberg, O. G., Itkin, M., Jackson, D., Jacobs, M., Jain, Y., Jewell, D., Jiang, L., Jiang, Z. G., Johnston, S., Joshi, P., Ju, Y., Judd, A., Kagel, A., Kahn, A., Kalavros, N., Kalhor, K., Karagkouni, D., Karathanos, T., Karunamurthy, A., Katari, S., Kates, H., Kaushal, M., Keener, N., Keller, M., Kenney, M., Kern, C., Kharchenko, P., Kim, J., Kingsford, C., Kirwan, J., Kiselev, V., Kishi, J., Kitata, R. B., Knoten, A., Kollar, C., Krishnamoorthy, P., Kruse, A. R. S., Da, K., Kundaje, A., Kutschera, E., Kwon, Y., Lake, B. B., Lancaster, S., Langlieb, J., Lardenoije, R., Laronda, M., Laskin, J., Lau, K., Lee, H., Lee, M., Lee, M., Strekalova, Y. L., Li, D., Li, J., Li, J., Li, X., Li, Z., Liao, Y. C., Liaw, T., Lin, P., Lin, Y., Lindsay, S., Liu, C., Liu, Y., Liu, Y., Lott, M., Lotz, M., Lowery, L., Lu, P., Lu, X., Lucarelli, N., Lun, X., Luo, Z., Ma, J., Macosko, E., Mahajan, M., Maier, L., Makowski, D., Malek, M., Manthey, D., Manz, T., Margulies, K., Marioni, J., Martindale, M., Mason, C., Mathews, C., Maye, P., McCallum, C., McDonough, E., McDonough, L., Mcdowell, H., Meads, M., Medina-Serpas, M., Ferreira, R. M., Messinger, J., Metis, K., Migas, L. G., Miller, B., Mimar, S., Minor, B., Misra, R., Missarova, A., Mistretta, C., Moens, R., Moerth, E., Moffitt, J., Molla, G., Monroe, M., Monte, E., Morgan, M., Muraro, D., Murphy, B., Murray, E., Musen, M. A., Naglah, A., Nasamran, C., Neelakantan, T., Nevins, S., Nguyen, H., Nguyen, N., Nguyen, T., Nguyen, T., Nigra, D., Nofal, M., Nolan, G., Nwanne, G., O’Connor, M., Okuda, K., Olmer, M., O’Neill, K., Otaluka, N., Pang, M., Parast, M., Pasa-Tolic, L., Paten, B., Patterson, N. H., Peng, T., Phillips, G., Pichavant, M., Piehowski, P., Pilner, H., Pingry, E., Pita-Juarez, Y., Plevritis, S., Ploumakis, A., Pouch, A., Pryhuber, G., Puerto, J., Qaurooni, D., Qin, L., Quardokus, E. M., Rajbhandari, P., Rakow-Penner, R., Ramasamy, R., Read, D., Record, E. G., Reeves, D., Ricarte, A., Rodríguez-Soto, A., Ropelewski, A., Rosario, J., Roselkis, M. A., Rowe, D., Roy, T. K., Ruffalo, M., Ruschman, N., Sabo, A., Sachdev, N., Saka, S., Salamon, D., Sarder, P., Sasaki, H., Satija, R., Saunders, D., Sawka, R., Schey, K., Schlehlein, H., Scholten, D., Schultz, S., Schwartz, L., Schwenk, M., Scibek, R., Segre, A., Serrata, M., Shands, W., Shen, X., Shendure, J., Shephard, H., Shi, L., Shi, T., Shin, D. G., Shirey, B., Sibilla, M., Silber, M., Silverstein, J., Simmel, D., Simmons, A., Singhal, D., Sivajothi, S., Smits, T., Soncin, F., Song, Q., Stanley, V., Stuart, T., Su, H., Su, P., Sun, X., Surrette, C., Swahn, H., Tan, K., Teichmann, S., Tejomay, A., Tellides, G., Thomas, K., Thomas, T., Thompson, M., Tian, H., Tideman, L., Trapnell, C., Tsai, A. G., Tsai, C. F., Tsai, L., Tsui, E., Tsui, T., Tung, J., Turner, M., Uranic, J., Vaishnav, E. D., Varra, S. R., Vaskivskyi, V., Velickovic, D., Velickovic, M., Verheyden, J., Waldrip, J., Wallace, D., Wan, X., Wang, A., Wang, F., Wang, M., Wang, S., Wang, X., Wasserfall, C., Wayne, L., Webber, J., Weber, G. M., Wei, B., Wei, J. J., Weimer, A., Welling, J., Wen, X., Wen, Z., Williams, M. K., Winfree, S., Winograd, N., Woodard, A., Wright, D., Wu, F., Wu, P. H., Wu, Q., Wu, X., Xing, Y., Xu, T., Yang, M., Yang, M., Yap, J., Ye, D. H., Yin, P., Yuan, Z., Yun, C., Zahraei, A., Zemaitis, K., Zhang, B., Zhang, C., Zhang, C., Zhang, C., Zhang, K., Zhang, S., Zhang, T., Zhang, Y., Zhao, B., Zhao, W., Zheng, J. W., Zhong, S., Zhu, B., Zhu, C., Zhu, D., Zhu, Q., Zhu, Y., Börner, K. & Snyder, M. P., Aug 2023, In: Nature Cell Biology. 25, 8, p. 1089-1100 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

29 Scopus citations

Age of Onset and Disease Course in Biopsy-Proven Minimal Change Disease: An Analysis From the Cure Glomerulonephropathy Network

CureGN Consortium, Dharnidharka, V., Gaut, J. & Brathwaite, K., Jun 2023, In: American Journal of Kidney Diseases. 81, 6, p. 695-706.e1

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

An atlas of healthy and injured cell states and niches in the human kidney

KPMP Consortium, Jul 20 2023, In: Nature. 619, 7970, p. 585-594 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

117 Scopus citations

A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease

the Kidney Precision Medicine Project, Dec 2023, In: Nature communications. 14, 1, 4140.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

International Society of Nephrology first consensus guidance for preclinical animal studies in translational nephrology

the TRANSFORM group, Humphreys, B. D., Gaut, J., Gewin, L. & Miner, J. H., Jul 2023, In: Kidney International. 104, 1, p. 36-45 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Racial and Ethnic Disparities in Acute Care Utilization Among Patients With Glomerular Disease

CureGN Consortium, Brathwaite, K. E., Dharnidharka, V. & Gaut, J., Mar 2023, In: American Journal of Kidney Diseases. 81, 3, p. 318-328.e1

Research output: Contribution to journal › Article › peer-review

Open Access

Rapamycin Perfluorocarbon Nanoparticle Mitigates Cisplatin-Induced Acute Kidney Injury

Zhou, Q., Quirk, J. D., Hu, Y., Yan, H., Gaut, J. P., Pham, C. T. N., Wickline, S. A. & Pan, H., Apr 2023, In: International journal of molecular sciences. 24, 7, 6086.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

2022

A glomerular transcriptomic landscape of apolipoprotein L1 in Black patients with focal segmental glomerulosclerosis

Nephrotic Syndrome Study Network (NEPTUNE), Jul 2022, In: Kidney International. 102, 1, p. 136-148 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

A Participant-Centered Approach to Understanding Risks and Benefits of Participation in Research Informed by the Kidney Precision Medicine Project

Kidney Precision Medicine Project, Jul 2022, In: American Journal of Kidney Diseases. 80, 1, p. 132-138 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology

the Kidney Precision Medicine Project, Dec 2022, In: Communications Medicine. 2, 1, 105.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

Integrated single-cell sequencing and histopathological analyses reveal diverse injury and repair responses in a participant with acute kidney injury: a clinical-molecular-pathologic correlation

Kidney Precision Medicine Project, Jun 2022, In: Kidney International. 101, 6, p. 1116-1125 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Kidney Biopsy Features Most Predictive of Clinical Outcomes in the Spectrum of Minimal Change Disease and Focal Segmental Glomerulosclerosis

the Nephrotic Syndrome Study Network (NEPTUNE), Jul 2022, In: Journal of the American Society of Nephrology. 33, 7, p. 1411-1426 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

Quantification of Glomerular Structural Lesions: Associations With Clinical Outcomes and Transcriptomic Profiles in Nephrotic Syndrome

Nephrotic Syndrome Study Network (NEPTUNE), Jun 2022, In: American Journal of Kidney Diseases. 79, 6, p. 807-819.e1

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

2021

A multimodal and integrated approach to interrogate human kidney biopsies with rigor and reproducibility: Guidelines from the kidney precision medicine project

Kidney Precision Medicine Project, 2021, In: Physiological genomics. 53, 1, p. 1-11 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

47 Scopus citations

A Pilot Study of Urine Proteomics in COVID-19–Associated Acute Kidney Injury

Ye, Y., Swensen, A. C., Wang, Y., Kaushal, M., Salamon, D., Knoten, A., Nicora, C. D., Marks, L., Gaut, J. P., Vijayan, A., Orton, D. J., Mudd, P. A., Parikh, C. R., Qian, W. J., O'Halloran, J. A., Piehowski, P. D. & Jain, S., Dec 2021, In: Kidney International Reports. 6, 12, p. 3064-3069 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

A Week of Nightly Fevers in a 10-year-old Girl

Kreienkamp, R. J., Schmitt, E. G., Gaut, J. & Stotter, B. R., Dec 1 2021, In: Pediatrics in Review. 42, 12, p. 694-697 4 p.

Research output: Contribution to journal › Article › peer-review

Cadherin-11, Sparc-related modular calcium binding protein-2, and Pigment epithelium-derived factor are promising non-invasive biomarkers of kidney fibrosis

Kidney Precision Medicine Project (KPMP), Sep 2021, In: Kidney International. 100, 3, p. 672-683 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

23 Scopus citations

Development and Validation of a Deep Learning Model to Quantify Glomerulosclerosis in Kidney Biopsy Specimens

Marsh, J. N., Liu, T. C., Wilson, P. C., Swamidass, S. J. & Gaut, J. P., Jan 20 2021, In: JAMA Network Open. 4, 1, 30939.

Research output: Contribution to journal › Article › peer-review

Open Access

29 Scopus citations

IL-7 Immunotherapy in a Nonimmunocompromised Patient With Intractable Fungal Wound Sepsis

Turnbull, I. R., Mazer, M. B., Hoofnagle, M. H., Kirby, J. P., Leonard, J. M., Mejia-Chew, C., Spec, A., Blood, J., Miles, S. M., Ransom, E. M., Potter, R. F., Gaut, J. P., Remy, K. E. & Hotchkiss, R. S., Jun 1 2021, In: Open Forum Infectious Diseases. 8, 6, ofab256.

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline

for the Kidney Precision Medicine Project, May 2021, In: Laboratory Investigation. 101, 5, p. 661-676 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

Single-cell spatial proteomic revelations on the multiparametric MRI heterogeneity of clinically significant prostate cancer

Pachynski, R. K., Kim, E. H., Miheecheva, N., Kotlov, N., Ramachandran, A., Postovalova, E., Galkin, I., Svekolkin, V., Lyu, Y., Zou, Q., Cao, D., Gaut, J., Ippolito, J. E., Bagaev, A., Bruttan, M., Gancharova, O., Nomie, K., Tsiper, M., Andriole, G. L. & Ataullakhanov, R. & 1 others, Hsieh, J. J., Jun 2021, In: Clinical Cancer Research. 27, 12, p. 3478-3490 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Sustained local inhibition of thrombin preserves renal microarchitecture and function after onset of acute kidney injury

Vargas, I., Stephenson, D. J., Baldwin, M., Gaut, J., Chalfant, C. E., Pan, H. & Wickline, S. A., Nov 2021, In: Nanomedicine: Nanotechnology, Biology, and Medicine. 38, 102449.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

2020

Beyond Panel-Based Testing: Exome Analysis Increases Sensitivity for Diagnosis of Genetic Kidney Disease

Wilson, P., Love-Gregory, L., Corliss, M., McNulty, S., Heusel, J. & Gaut, J. P., Aug 1 2020, In: Kidney360. 1, 8, p. 772-780 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Deep learning quantification of percent steatosis in donor liver biopsy frozen sections

Sun, L., Marsh, J. N., Matlock, M. K., Chen, L., Gaut, J. P., Brunt, E. M., Swamidass, S. J. & Liu, T. C., Oct 2020, In: EBioMedicine. 60, 103029.

Research output: Contribution to journal › Article › peer-review

Open Access

37 Scopus citations

Harnessing Expressed Single Nucleotide Variation and Single Cell RNA Sequencing to Define Immune Cell Chimerism in the Rejecting Kidney Transplant

Malone, A. F., Wu, H., Fronick, C., Fulton, R., Gaut, J. P. & Humphreys, B. D., Sep 2020, In: Journal of the American Society of Nephrology. 31, 9, p. 1977-1986 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

71 Scopus citations

The longitudinal relationship between patient-reported outcomes and clinical characteristics among patients with focal segmental glomerulosclerosis in the nephrotic syndrome study network

Nephrotic Syndrome Study Network, 2020, In: Clinical Kidney Journal. 13, 4, p. 597-606 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

2019

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys

Lake, B. B., Chen, S., Hoshi, M., Plongthongkum, N., Salamon, D., Knoten, A., Vijayan, A., Venkatesh, R., Kim, E. H., Gao, D., Gaut, J., Zhang, K. & Jain, S., Dec 1 2019, In: Nature communications. 10, 1, 2832.

Research output: Contribution to journal › Article › peer-review

Open Access

173 Scopus citations

CureGN Study Rationale, Design, and Methods: Establishing a Large Prospective Observational Study of Glomerular Disease

CureGN Consortium, Feb 2019, In: American Journal of Kidney Diseases. 73, 2, p. 218-229 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

67 Scopus citations

Decellularized extracellular matrix microparticles seeded with bone marrow mesenchymal stromal cells for the treatment of full-thickness cutaneous wounds

Westman, A. M., Goldstein, R. L., Bradica, G., Goldman, S. M., Randolph, M. A., Gaut, J. P., Vacanti, J. P. & Hoganson, D. M., Mar 1 2019, In: Journal of Biomaterials Applications. 33, 8, p. 1070-1079 10 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Enhanced immunosuppression improves early allograft function in a porcine kidney transplant model of donation after circulatory death

Xu, M., Garcia-Aroz, S., Banan, B., Wang, X., Rabe, B. J., Zhou, F., Nayak, D. K., Zhang, Z., Jia, J., Upadhya, G. A., Manning, P. T., Gaut, J. P., Lin, Y. & Chapman, W. C., Mar 2019, In: American Journal of Transplantation. 19, 3, p. 713-723 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Health-related quality of life in glomerular disease

CureGN Consortium, May 2019, In: Kidney International. 95, 5, p. 1209-1224 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

41 Scopus citations

Plasma zonulin levels in childhood nephrotic syndrome

NEPTUNE Cohort Study, 2019, In: Frontiers in Pediatrics. 7, MAY, 197.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Successful use of rituximab for hydralazine-induced anti-neutrophil cytoplasmic antibodies-associated vasculitis

Paley, M. A., Edrees, F., Kudose, S., Gaut, J. P., Ranganathan, P. & Vijayan, A., Jan 1 2019, In: Saudi journal of kidney diseases and transplantation : an official publication of the Saudi Center for Organ Transplantation, Saudi Arabia. 30, 1, p. 226-230 5 p.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

WNT pathway signaling is associated with microvascular injury and predicts kidney transplant failure

Seifert, M. E., Gaut, J. P., Guo, B., Jain, S., Malone, A. F., Geraghty, F., Della Manna, D. L., Yang, E. S., Yi, N., Brennan, D. C. & Mannon, R. B., Oct 1 2019, In: American Journal of Transplantation. 19, 10, p. 2833-2845 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

2018

Anti-CD47 monoclonal antibody therapy reduces ischemia-reperfusion injury of renal allografts in a porcine model of donation after cardiac death

Xu, M., Wang, X., Banan, B., Chirumbole, D. L., Garcia-Aroz, S., Balakrishnan, A., Nayak, D. K., Zhang, Z., Jia, J., Upadhya, G. A., Gaut, J. P., Hiebsch, R., Manning, P. T., Wu, N., Lin, Y. & Chapman, W. C., Apr 2018, In: American Journal of Transplantation. 18, 4, p. 855-867 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

22 Scopus citations

Antithrombin perfluorocarbon nanoparticles improve renal allograft function in a murine deceased criteria donor model

Vemuri, C., Upadhya, G. A., Arif, B., Jia, J., Lin, Y., Gaut, J. P., Fazal, J., Pan, H., Wickline, S. A. & Chapman, W. C., Sep 2018, In: Transplantation Direct. 4, 9, e384.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

CD47 blockade reduces ischemia/reperfusion injury in donation after cardiac death rat kidney transplantation

Wang, X., Xu, M., Jia, J., Zhang, Z., Gaut, J. P., Upadhya, G. A., Manning, P. T., Lin, Y. & Chapman, W. C., Apr 2018, In: American Journal of Transplantation. 18, 4, p. 843-854 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

Deep learning global glomerulosclerosis in transplant kidney frozen sections

Marsh, J. N., Matlock, M. K., Kudose, S., Liu, T. C., Stappenbeck, T. S., Gaut, J. P. & Swamidass, S. J., Dec 2018, In: IEEE Transactions on Medical Imaging. 37, 12, p. 2718-2728 11 p., 8398488.

Research output: Contribution to journal › Article › peer-review

Open Access

116 Scopus citations

Flow Preservation of Umbilical Vein for Autologous Shunt and Cardiovascular Reconstruction

Hoganson, D. M., Cooper, D. A., Rich, K. N., Piekarski, B. L., Gui, L., Gaut, J. P., Mayer, J. E., Aikawa, E., Niklason, L. E. & Emani, S. M., Jun 2018, In: Annals of Thoracic Surgery. 105, 6, p. 1809-1818 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Quantification of vascular damage in acute kidney injury with fluorine magnetic resonance imaging and spectroscopy

Moore, J. K., Chen, J., Pan, H., Gaut, J. P., Jain, S. & Wickline, S. A., Jun 2018, In: Magnetic resonance in medicine. 79, 6, p. 3144-3153 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

Renal Histopathologic Findings Associated with Severity of Clinical Acute Kidney Injury

Kudose, S., Hoshi, M., Jain, S. & Gaut, J. P., 2018, In: American Journal of Surgical Pathology. 42, 5, p. 625-635 11 p.

Research output: Contribution to journal › Article › peer-review

22 Scopus citations

Reproducibility and feasibility of strategies for morphologic assessment of renal biopsies using the nephrotic syndrome study network digital pathology scoring system

Zee, J., Hodgin, J. B., Mariani, L. H., Gaut, J. P., Palmer, M. B., Bagnasco, S. M., Rosenberg, A. Z., Hewitt, S. M., Holzman, L. B., Gillespie, B. W. & Barisoni, L., May 2018, In: Archives of Pathology and Laboratory Medicine. 142, 5, p. 613-625 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

20 Scopus citations

Single-cell transcriptomics of a human kidney allograft biopsy specimen defines a diverse inflammatory response

Wu, H., Malone, A. F., Donnelly, E. L., Kirita, Y., Uchimura, K., Ramakrishnan, S. M., Gaut, J. P. & Humphreys, B. D., Aug 2018, In: Journal of the American Society of Nephrology. 29, 8, p. 2069-2080 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

266 Scopus citations

Joseph Gaut

Research output

Search results