Joseph Gaut

Research output

Research output per year 1997 2014 2018 2019 2021 2022 2023 2023

• 73 Article
• 9 Comment/debate
• 9 Review article
• 5 Chapter
• 4 More
  • 2 Editorial
  • 1 Paper
  • 1 Letter

Research output per year

Research output per year

Search results

• 2023

  Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

  Jain, S., Pei, L., Spraggins, J. M., Angelo, M., Carson, J. P., Gehlenborg, N., Ginty, F., Gonçalves, J. P., Hagood, J. S., Hickey, J. W., Kelleher, N. L., Laurent, L. C., Lin, S., Lin, Y., Liu, H., Naba, A., Nakayasu, E. S., Qian, W. J., Radtke, A., Robson, P., & 464 othersStockwell, B. R., Van de Plas, R., Vlachos, I. S., Zhou, M., Ahn, K. J., Allen, J., Anderson, D. M., Anderton, C. R., Curcio, C., Angelin, A., Arvanitis, C., Atta, L., Awosika-Olumo, D., Bahmani, A., Bai, H., Balderrama, K., Balzano, L., Bandyopadhyay, G., Bandyopadhyay, S., Bar-Joseph, Z., Barnhart, K., Barwinska, D., Becich, M., Becker, L., Becker, W., Bedi, K., Bendall, S., Benninger, K., Betancur, D., Bettinger, K., Billings, S., Blood, P., Bolin, D., Border, S., Bosse, M., Bramer, L., Brewer, M., Brusko, M., Bueckle, A., Burke, K., Burnum-Johnson, K., Butcher, E., Butterworth, E., Cai, L., Calandrelli, R., Caldwell, M., Campbell-Thompson, M., Cao, D., Cao-Berg, I., Caprioli, R., Caraccio, C., Caron, A., Carroll, M., Chadwick, C., Chen, A., Chen, D., Chen, F., Chen, H., Chen, J., Chen, L., Chen, L., Chiacchia, K., Cho, S., Chou, P., Choy, L., Cisar, C., Clair, G., Clarke, L., Clouthier, K. A., Colley, M. E., Conlon, K., Conroy, J., Contrepois, K., Corbett, A., Corwin, A., Cotter, D., Courtois, E., Cruz, A., Csonka, C., Czupil, K., Daiya, V., Dale, K., Davanagere, S. A., Dayao, M., de Caestecker, M. P., Decker, A., Deems, S., Degnan, D., Desai, T., Deshpande, V., Deutsch, G., Devlin, M., Diep, D., Dodd, C., Donahue, S., Dong, W., dos Santos Peixoto, R., Duffy, M., Dufresne, M., Duong, T. E., Dutra, J., Eadon, M. T., El-Achkar, T. M., Enninful, A., Eraslan, G., Eshelman, D., Espin-Perez, A., Esplin, E. D., Esselman, A., Falo, L. D., Falo, L., Fan, J., Fan, R., Farrow, M. A., Farzad, N., Favaro, P., Fermin, J., Filiz, F., Filus, S., Fisch, K., Fisher, E., Fisher, S., Flowers, K., Flynn, W. F., Fogo, A. B., Fu, D., Fulcher, J., Fung, A., Furst, D., Gallant, M., Gao, F., Gao, Y., Gaulton, K., Gaut, J. P., Gee, J., Ghag, R. R., Ghazanfar, S., Ghose, S., Gisch, D., Gold, I., Gondalia, A., Gorman, B., Greenleaf, W., Greenwald, N., Gregory, B., Guo, R., Gupta, R., Hakimian, H., Haltom, J., Halushka, M., Han, K. S., Hanson, C., Harbury, P., Hardi, J., Harlan, L., Harris, R. C., Hartman, A., Heidari, E., Helfer, J., Helminiak, D., Hemberg, M., Henning, N., Herr, B. W., Ho, J., Holden-Wiltse, J., Hong, S. H., Hong, Y. K., Honick, B., Hood, G., Hu, P., Hu, Q., Huang, M., Huyck, H., Imtiaz, T., Isberg, O. G., Itkin, M., Jackson, D., Jacobs, M., Jain, Y., Jewell, D., Jiang, L., Jiang, Z. G., Johnston, S., Joshi, P., Ju, Y., Judd, A., Kagel, A., Kahn, A., Kalavros, N., Kalhor, K., Karagkouni, D., Karathanos, T., Karunamurthy, A., Katari, S., Kates, H., Kaushal, M., Keener, N., Keller, M., Kenney, M., Kern, C., Kharchenko, P., Kim, J., Kingsford, C., Kirwan, J., Kiselev, V., Kishi, J., Kitata, R. B., Knoten, A., Kollar, C., Krishnamoorthy, P., Kruse, A. R. S., Da, K., Kundaje, A., Kutschera, E., Kwon, Y., Lake, B. B., Lancaster, S., Langlieb, J., Lardenoije, R., Laronda, M., Laskin, J., Lau, K., Lee, H., Lee, M., Lee, M., Strekalova, Y. L., Li, D., Li, J., Li, J., Li, X., Li, Z., Liao, Y. C., Liaw, T., Lin, P., Lin, Y., Lindsay, S., Liu, C., Liu, Y., Liu, Y., Lott, M., Lotz, M., Lowery, L., Lu, P., Lu, X., Lucarelli, N., Lun, X., Luo, Z., Ma, J., Macosko, E., Mahajan, M., Maier, L., Makowski, D., Malek, M., Manthey, D., Manz, T., Margulies, K., Marioni, J., Martindale, M., Mason, C., Mathews, C., Maye, P., McCallum, C., McDonough, E., McDonough, L., Mcdowell, H., Meads, M., Medina-Serpas, M., Ferreira, R. M., Messinger, J., Metis, K., Migas, L. G., Miller, B., Mimar, S., Minor, B., Misra, R., Missarova, A., Mistretta, C., Moens, R., Moerth, E., Moffitt, J., Molla, G., Monroe, M., Monte, E., Morgan, M., Muraro, D., Murphy, B., Murray, E., Musen, M. A., Naglah, A., Nasamran, C., Neelakantan, T., Nevins, S., Nguyen, H., Nguyen, N., Nguyen, T., Nguyen, T., Nigra, D., Nofal, M., Nolan, G., Nwanne, G., O’Connor, M., Okuda, K., Olmer, M., O’Neill, K., Otaluka, N., Pang, M., Parast, M., Pasa-Tolic, L., Paten, B., Patterson, N. H., Peng, T., Phillips, G., Pichavant, M., Piehowski, P., Pilner, H., Pingry, E., Pita-Juarez, Y., Plevritis, S., Ploumakis, A., Pouch, A., Pryhuber, G., Puerto, J., Qaurooni, D., Qin, L., Quardokus, E. M., Rajbhandari, P., Rakow-Penner, R., Ramasamy, R., Read, D., Record, E. G., Reeves, D., Ricarte, A., Rodríguez-Soto, A., Ropelewski, A., Rosario, J., Roselkis, M. A., Rowe, D., Roy, T. K., Ruffalo, M., Ruschman, N., Sabo, A., Sachdev, N., Saka, S., Salamon, D., Sarder, P., Sasaki, H., Satija, R., Saunders, D., Sawka, R., Schey, K., Schlehlein, H., Scholten, D., Schultz, S., Schwartz, L., Schwenk, M., Scibek, R., Segre, A., Serrata, M., Shands, W., Shen, X., Shendure, J., Shephard, H., Shi, L., Shi, T., Shin, D. G., Shirey, B., Sibilla, M., Silber, M., Silverstein, J., Simmel, D., Simmons, A., Singhal, D., Sivajothi, S., Smits, T., Soncin, F., Song, Q., Stanley, V., Stuart, T., Su, H., Su, P., Sun, X., Surrette, C., Swahn, H., Tan, K., Teichmann, S., Tejomay, A., Tellides, G., Thomas, K., Thomas, T., Thompson, M., Tian, H., Tideman, L., Trapnell, C., Tsai, A. G., Tsai, C. F., Tsai, L., Tsui, E., Tsui, T., Tung, J., Turner, M., Uranic, J., Vaishnav, E. D., Varra, S. R., Vaskivskyi, V., Velickovic, D., Velickovic, M., Verheyden, J., Waldrip, J., Wallace, D., Wan, X., Wang, A., Wang, F., Wang, M., Wang, S., Wang, X., Wasserfall, C., Wayne, L., Webber, J., Weber, G. M., Wei, B., Wei, J. J., Weimer, A., Welling, J., Wen, X., Wen, Z., Williams, M. K., Winfree, S., Winograd, N., Woodard, A., Wright, D., Wu, F., Wu, P. H., Wu, Q., Wu, X., Xing, Y., Xu, T., Yang, M., Yang, M., Yap, J., Ye, D. H., Yin, P., Yuan, Z., Yun, C., Zahraei, A., Zemaitis, K., Zhang, B., Zhang, C., Zhang, C., Zhang, C., Zhang, K., Zhang, S., Zhang, T., Zhang, Y., Zhao, B., Zhao, W., Zheng, J. W., Zhong, S., Zhu, B., Zhu, C., Zhu, D., Zhu, Q., Zhu, Y., Börner, K. & Snyder, M. P., Aug 2023, In: Nature Cell Biology. 25, 8, p. 1089-1100 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Atlases 100%
  • Biomedical Research 31%
  • Human Body 30%
  • Technology 20%
  • Population 12%
  2 Scopus citations

• Age of Onset and Disease Course in Biopsy-Proven Minimal Change Disease: An Analysis From the Cure Glomerulonephropathy Network

  CureGN Consortium, Dharnidharka, V., Gaut, J. & Brathwaite, K., Jun 2023, In: American Journal of Kidney Diseases. 81, 6, p. 695-706.e1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lipoid Nephrosis 100%
  • Age of Onset 69%
  • Rituximab 63%
  • Biopsy 44%
  • Recurrence 25%

• An atlas of healthy and injured cell states and niches in the human kidney

  KPMP Consortium, Jul 20 2023, In: Nature. 619, 7970, p. 585-594 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Atlases 100%
  • Kidney Diseases 73%
  • Kidney 49%
  • Active Immunity 35%
  • Wounds and Injuries 33%
  12 Scopus citations

• A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease

  the Kidney Precision Medicine Project, Dec 2023, In: Nature communications. 14, 1, 4140.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • papillae 100%
  • Kidney Medulla 91%
  • Calcium Oxalate 80%
  • kidneys 76%
  • Atlases 65%
  1 Scopus citations

• Association of COVID-19 Versus COVID-19 Vaccination With Kidney Function and Disease Activity in Primary Glomerular Disease: A Report of the Cure Glomerulonephropathy Study

  Cure Glomerulonephropathy (CureGN) Study Consortium, 2023, (Accepted/In press) In: American Journal of Kidney Diseases.

  Research output: Contribution to journal › Article › peer-review

  • Kidney Diseases 100%
  • Vaccination 76%
  • Glomerular Filtration Rate 50%
  • Proteinuria 40%
  • Lipoid Nephrosis 28%

• International Society of Nephrology first consensus guidance for preclinical animal studies in translational nephrology

  the TRANSFORM group, Humphreys, B. D., Gaut, J., Gewin, L. & Miner, J. H., Jul 2023, In: Kidney International. 104, 1, p. 36-45 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Nephrology 100%
  • Kidney Diseases 88%
  • Drug Development 79%
  • Animals 42%
  • Organoids 27%
  4 Scopus citations

• Racial and Ethnic Disparities in Acute Care Utilization Among Patients With Glomerular Disease

  CureGN Consortium, Brathwaite, K. E., Dharnidharka, V. & Gaut, J., Mar 2023, In: American Journal of Kidney Diseases. 81, 3, p. 318-328.e1

  Research output: Contribution to journal › Article › peer-review

  • Social Class 100%
  • Hispanic Americans 75%
  • Child 45%
  • Unemployment 32%
  • Proxy 27%

• Rapamycin Perfluorocarbon Nanoparticle Mitigates Cisplatin-Induced Acute Kidney Injury

  Zhou, Q., Quirk, J. D., Hu, Y., Yan, H., Gaut, J. P., Pham, C. T. N., Wickline, S. A. & Pan, H., Apr 2023, In: International journal of molecular sciences. 24, 7, 6086.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fluorocarbons 100%
  • kidneys 89%
  • Sirolimus 76%
  • Nanoparticles 70%
  • Acute Kidney Injury 68%
  1 Scopus citations

• Time to Abandon Renalism Patients with Kidney Diseases Deserve More

  Gaut, J. P., 2023, In: Clinical Journal of the American Society of Nephrology. 18, 4, p. 419-420 2 p.

  Research output: Contribution to journal › Comment/debate

  Open Access
  2 Scopus citations
• 2022

  A glomerular transcriptomic landscape of apolipoprotein L1 in Black patients with focal segmental glomerulosclerosis

  Nephrotic Syndrome Study Network (NEPTUNE), Jul 2022, In: Kidney International. 102, 1, p. 136-148 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Apolipoprotein L1 100%
  • Focal Segmental Glomerulosclerosis 74%
  • African Continental Ancestry Group 56%
  • Mitochondrial Genes 24%
  • Genes 23%
  7 Scopus citations

• A Participant-Centered Approach to Understanding Risks and Benefits of Participation in Research Informed by the Kidney Precision Medicine Project

  Kidney Precision Medicine Project, Jul 2022, In: American Journal of Kidney Diseases. 80, 1, p. 132-138 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Precision Medicine 100%
  • Risk Assessment 77%
  • Kidney 49%
  • Ethicists 34%
  • Respect 24%
  1 Scopus citations

• Integrated single-cell sequencing and histopathological analyses reveal diverse injury and repair responses in a participant with acute kidney injury: a clinical-molecular-pathologic correlation

  Kidney Precision Medicine Project, Jun 2022, In: Kidney International. 101, 6, p. 1116-1125 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  6 Scopus citations

• Kidney Biopsy Features Most Predictive of Clinical Outcomes in the Spectrum of Minimal Change Disease and Focal Segmental Glomerulosclerosis

  the Nephrotic Syndrome Study Network (NEPTUNE), Jul 2022, In: Journal of the American Society of Nephrology. 33, 7, p. 1411-1426 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lipoid Nephrosis 100%
  • Focal Segmental Glomerulosclerosis 95%
  • Nephrotic Syndrome 82%
  • Sclerosis 52%
  • Biopsy 44%
  10 Scopus citations

• Quantification of Glomerular Structural Lesions: Associations With Clinical Outcomes and Transcriptomic Profiles in Nephrotic Syndrome

  Nephrotic Syndrome Study Network (NEPTUNE), Jun 2022, In: American Journal of Kidney Diseases. 79, 6, p. 807-819.e1

  Research output: Contribution to journal › Article › peer-review

  • Nephrotic Syndrome 100%
  • Lipoid Nephrosis 72%
  • Focal Segmental Glomerulosclerosis 69%
  • Glomerular Filtration Rate 50%
  • Biopsy 43%
  8 Scopus citations

• The potential of artificial intelligence-based applications in kidney pathology

  Bullow, R. D., Marsh, J. N., Swamidass, S. J., Gaut, J. P. & Boor, P., May 1 2022, In: Current Opinion in Nephrology and Hypertension. 31, 3, p. 251-257 7 p.

  Research output: Contribution to journal › Review article › peer-review

  • Artificial Intelligence 100%
  • Technology 49%
  • Glass 48%
  • Pathology 47%
  • Kidney 40%
  5 Scopus citations

• Virus-related collapsing glomerulopathy, a common mechanism of injury?

  Gaut, J. P., May 2022, In: Kidney International. 101, 5, p. 880-882 3 p.

  Research output: Contribution to journal › Comment/debate

  • Viruses 100%
  • Technology 97%
  • Severe Acute Respiratory Syndrome 96%
  • Coronavirus 94%
  • Wounds and Injuries 72%
• 2021

  Acute kidney injury pathology and pathophysiology: A retrospective review

  Gaut, J. P. & Liapis, H., Feb 1 2021, In: Clinical Kidney Journal. 14, 2, p. 526-536 11 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Acute Kidney Injury 100%
  • Pathology 66%
  • Kidney 22%
  • Kidney Diseases 22%
  • Chronic Renal Insufficiency 19%
  33 Scopus citations

• A multimodal and integrated approach to interrogate human kidney biopsies with rigor and reproducibility: Guidelines from the kidney precision medicine project

  Kidney Precision Medicine Project, 2021, In: Physiological genomics. 53, 1, p. 1-11 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Precision Medicine 100%
  • Quality Control 72%
  • Technology 60%
  • Atlases 59%
  • Guidelines 59%
  38 Scopus citations

• A Pilot Study of Urine Proteomics in COVID-19–Associated Acute Kidney Injury

  Ye, Y., Swensen, A. C., Wang, Y., Kaushal, M., Salamon, D., Knoten, A., Nicora, C. D., Marks, L., Gaut, J. P., Vijayan, A., Orton, D. J., Mudd, P. A., Parikh, C. R., Qian, W. J., O'Halloran, J. A., Piehowski, P. D. & Jain, S., Dec 2021, In: Kidney International Reports. 6, 12, p. 3064-3069 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• A Week of Nightly Fevers in a 10-year-old Girl

  Kreienkamp, R. J., Schmitt, E. G., Gaut, J. & Stotter, B. R., Dec 1 2021, In: Pediatrics in Review. 42, 12, p. 694-697 4 p.

  Research output: Contribution to journal › Article › peer-review

• Cadherin-11, Sparc-related modular calcium binding protein-2, and Pigment epithelium-derived factor are promising non-invasive biomarkers of kidney fibrosis

  Kidney Precision Medicine Project (KPMP), Sep 2021, In: Kidney International. 100, 3, p. 672-683 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • endoplasmic reticulum glycoprotein p72 100%
  • osteoblast cadherin 93%
  • pigment epithelium-derived factor 82%
  • Fibrosis 40%
  • Biomarkers 35%
  15 Scopus citations

• Development and Validation of a Deep Learning Model to Quantify Glomerulosclerosis in Kidney Biopsy Specimens

  Marsh, J. N., Liu, T. C., Wilson, P. C., Swamidass, S. J. & Gaut, J. P., Jan 20 2021, In: JAMA Network Open. 4, 1, 30939.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Deep Learning 100%
  • Pathologists 71%
  • Tissue Donors 44%
  • Biopsy 44%
  • Kidney 39%
  22 Scopus citations

• IL-7 Immunotherapy in a Nonimmunocompromised Patient With Intractable Fungal Wound Sepsis

  Turnbull, I. R., Mazer, M. B., Hoofnagle, M. H., Kirby, J. P., Leonard, J. M., Mejia-Chew, C., Spec, A., Blood, J., Miles, S. M., Ransom, E. M., Potter, R. F., Gaut, J. P., Remy, K. E. & Hotchkiss, R. S., Jun 1 2021, In: Open Forum Infectious Diseases. 8, 6, ofab256.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Interleukin-7 100%
  • Immunotherapy 68%
  • Sepsis 62%
  • Trichosporon 58%
  • Immunologic Adjuvants 52%
  8 Scopus citations

• Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline

  for the Kidney Precision Medicine Project, May 2021, In: Laboratory Investigation. 101, 5, p. 661-676 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Kidney 100%
  • Workflow 34%
  • Microscopy 25%
  • Software 23%
  • Data Analysis 23%
  13 Scopus citations

• Patient perspectives and involvement in precision medicine research

  Kidney Precision Medicine Project, Mar 2021, In: Kidney International. 99, 3, p. 511-514 4 p.

  Research output: Contribution to journal › Comment/debate

  • Precision Medicine 100%
  • Kidney 33%
  • Acute Kidney Injury 29%
  • Chronic Renal Insufficiency 28%
  • Organizations 25%
  4 Scopus citations

• Rationale and design of the Kidney Precision Medicine Project

  Kidney Precision Medicine Project, Mar 2021, In: Kidney International. 99, 3, p. 498-510 13 p.

  Research output: Contribution to journal › Comment/debate

  • Precision Medicine 100%
  • Kidney 49%
  • Acute Kidney Injury 48%
  • Chronic Renal Insufficiency 47%
  • Atlases 22%
  70 Scopus citations

• Redefining the Laboratory Approach to Acute Kidney Injury Investigation

  Gaut, J. P., Sep 1 2021, In: The journal of applied laboratory medicine. 6, 5, p. 1105-1108 4 p.

  Research output: Contribution to journal › Editorial

  Open Access

• Single-cell spatial proteomic revelations on the multiparametric MRI heterogeneity of clinically significant prostate cancer

  Pachynski, R. K., Kim, E. H., Miheecheva, N., Kotlov, N., Ramachandran, A., Postovalova, E., Galkin, I., Svekolkin, V., Lyu, Y., Zou, Q., Cao, D., Gaut, J., Ippolito, J. E., Bagaev, A., Bruttan, M., Gancharova, O., Nomie, K., Tsiper, M., Andriole, G. L., Ataullakhanov, R., & 1 othersHsieh, J. J., Jun 2021, In: Clinical Cancer Research. 27, 12, p. 3478-3490 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiparametric Magnetic Resonance Imaging 100%
  • Proteomics 65%
  • Prostatic Neoplasms 56%
  • Neoplasms 10%
  • Prostatectomy 9%
  11 Scopus citations

• Sustained local inhibition of thrombin preserves renal microarchitecture and function after onset of acute kidney injury

  Vargas, I., Stephenson, D. J., Baldwin, M., Gaut, J., Chalfant, C. E., Pan, H. & Wickline, S. A., Nov 2021, In: Nanomedicine: Nanotechnology, Biology, and Medicine. 38, 102449.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Inhibition of Thrombin 100%
  • arginine chloromethyl ketone 94%
  • Fluorocarbons 89%
  • Arginine 84%
  • Ketones 68%
  4 Scopus citations
• 2020

  Beyond Panel-Based Testing: Exome Analysis Increases Sensitivity for Diagnosis of Genetic Kidney Disease

  Wilson, P., Love-Gregory, L., Corliss, M., McNulty, S., Heusel, J. & Gaut, J. P., Aug 1 2020, In: Kidney360. 1, 8, p. 772-780 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Exome 100%
  • Kidney Diseases 87%
  • Inborn Genetic Diseases 77%
  • Genes 33%
  • Physicians 26%
  7 Scopus citations

• Deep learning quantification of percent steatosis in donor liver biopsy frozen sections

  Sun, L., Marsh, J. N., Matlock, M. K., Chen, L., Gaut, J. P., Brunt, E. M., Swamidass, S. J. & Liu, T. C., Oct 2020, In: EBioMedicine. 60, 103029.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Deep Learning 100%
  • Frozen Sections 80%
  • Tissue Donors 57%
  • Donor 49%
  • Biopsy 44%
  29 Scopus citations

• Harnessing Expressed Single Nucleotide Variation and Single Cell RNA Sequencing to Define Immune Cell Chimerism in the Rejecting Kidney Transplant

  Malone, A. F., Wu, H., Fronick, C., Fulton, R., Gaut, J. P. & Humphreys, B. D., Sep 2020, In: Journal of the American Society of Nephrology. 31, 9, p. 1977-1986 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Chimerism 100%
  • RNA Sequence Analysis 89%
  • Nucleotides 64%
  • Tissue Donors 62%
  • Transplants 49%
  49 Scopus citations

• The longitudinal relationship between patient-reported outcomes and clinical characteristics among patients with focal segmental glomerulosclerosis in the nephrotic syndrome study network

  Nephrotic Syndrome Study Network, 2020, In: Clinical Kidney Journal. 13, 4, p. 597-606 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Focal Segmental Glomerulosclerosis 100%
  • Nephrotic Syndrome 86%
  • Patient Reported Outcome Measures 84%
  • Fatigue 37%
  • Anxiety 31%
  11 Scopus citations
• 2019

  A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys

  Lake, B. B., Chen, S., Hoshi, M., Plongthongkum, N., Salamon, D., Knoten, A., Vijayan, A., Venkatesh, R., Kim, E. H., Gao, D., Gaut, J., Zhang, K. & Jain, S., Dec 1 2019, In: Nature communications. 10, 1, 2832.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • RNA Sequencing 100%
  • sequencing 81%
  • kidneys 75%
  • anatomy 74%
  • Pipeline 69%
  140 Scopus citations

• CureGN Study Rationale, Design, and Methods: Establishing a Large Prospective Observational Study of Glomerular Disease

  CureGN Consortium, Feb 2019, In: American Journal of Kidney Diseases. 73, 2, p. 218-229 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Observational Studies 100%
  • Prospective Studies 81%
  • Chronic Kidney Failure 64%
  • IGA Glomerulonephritis 55%
  • Lipoid Nephrosis 50%
  53 Scopus citations

• Decellularized extracellular matrix microparticles seeded with bone marrow mesenchymal stromal cells for the treatment of full-thickness cutaneous wounds

  Westman, A. M., Goldstein, R. L., Bradica, G., Goldman, S. M., Randolph, M. A., Gaut, J. P., Vacanti, J. P. & Hoganson, D. M., Mar 1 2019, In: Journal of Biomaterials Applications. 33, 8, p. 1070-1079 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Bone 100%
  • Collagen 68%
  • Glues 64%
  • Bioreactors 62%
  • Infiltration 60%
  9 Scopus citations

• Enhanced immunosuppression improves early allograft function in a porcine kidney transplant model of donation after circulatory death

  Xu, M., Garcia-Aroz, S., Banan, B., Wang, X., Rabe, B. J., Zhou, F., Nayak, D. K., Zhang, Z., Jia, J., Upadhya, G. A., Manning, P. T., Gaut, J. P., Lin, Y. & Chapman, W. C., Mar 2019, In: American Journal of Transplantation. 19, 3, p. 713-723 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Immunosuppression 100%
  • Allografts 96%
  • Swine 87%
  • Transplants 69%
  • Kidney 59%
  4 Scopus citations

• Health-related quality of life in glomerular disease

  CureGN Consortium, May 2019, In: Kidney International. 95, 5, p. 1209-1224 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Quality of Life 100%
  • Patient Reported Outcome Measures 76%
  • Immunosuppression 31%
  • Edema 28%
  • Lipoid Nephrosis 23%
  31 Scopus citations

• Plasma zonulin levels in childhood nephrotic syndrome

  NEPTUNE Cohort Study, 2019, In: Frontiers in Pediatrics. 7, MAY, 197.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • zonulin 100%
  • Nephrotic Syndrome 64%
  • Lipoid Nephrosis 17%
  • Focal Segmental Glomerulosclerosis 16%
  • Proteinuria 12%
  10 Scopus citations

• Separation

  Gaut, J. P., Feb 2019, In: American Journal of Kidney Diseases. 73, 2, p. A17-A18

  Research output: Contribution to journal › Editorial

• Successful use of rituximab for hydralazine-induced anti-neutrophil cytoplasmic antibodies-associated vasculitis

  Paley, M. A., Edrees, F., Kudose, S., Gaut, J. P., Ranganathan, P. & Vijayan, A., Jan 1 2019, In: Saudi journal of kidney diseases and transplantation : an official publication of the Saudi Center for Organ Transplantation, Saudi Arabia. 30, 1, p. 226-230 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis 100%
  • Hydralazine 91%
  • Rituximab 75%
  • Glomerulonephritis 48%
  • Hemorrhage 44%
  5 Scopus citations

• WNT pathway signaling is associated with microvascular injury and predicts kidney transplant failure

  Seifert, M. E., Gaut, J. P., Guo, B., Jain, S., Malone, A. F., Geraghty, F., Della Manna, D. L., Yang, E. S., Yi, N., Brennan, D. C. & Mannon, R. B., Oct 1 2019, In: American Journal of Transplantation. 19, 10, p. 2833-2845 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Renal Insufficiency 100%
  • Transplants 71%
  • Wounds and Injuries 55%
  • Allografts 33%
  • Biopsy 30%
  3 Scopus citations
• 2018

  Anti-CD47 monoclonal antibody therapy reduces ischemia-reperfusion injury of renal allografts in a porcine model of donation after cardiac death

  Xu, M., Wang, X., Banan, B., Chirumbole, D. L., Garcia-Aroz, S., Balakrishnan, A., Nayak, D. K., Zhang, Z., Jia, J., Upadhya, G. A., Gaut, J. P., Hiebsch, R., Manning, P. T., Wu, N., Lin, Y. & Chapman, W. C., Apr 2018, In: American Journal of Transplantation. 18, 4, p. 855-867 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Reperfusion Injury 100%
  • Allografts 90%
  • Swine 81%
  • Monoclonal Antibodies 75%
  • Kidney 55%
  21 Scopus citations

• Antithrombin perfluorocarbon nanoparticles improve renal allograft function in a murine deceased criteria donor model

  Vemuri, C., Upadhya, G. A., Arif, B., Jia, J., Lin, Y., Gaut, J. P., Fazal, J., Pan, H., Wickline, S. A. & Chapman, W. C., Sep 2018, In: Transplantation Direct. 4, 9, e384.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fluorocarbons 100%
  • Antithrombins 88%
  • Nanoparticles 64%
  • Allografts 63%
  • Tissue Donors 56%
  7 Scopus citations

• Case 3: Ambiguous genitalia in a newborn

  Viehl, L., Gaut, J. P., Dandamudi, R. & Davis, T. K., Aug 2018, In: NeoReviews. 19, 8, p. e485-e489

  Research output: Contribution to journal › Comment/debate

• CD47 blockade reduces ischemia/reperfusion injury in donation after cardiac death rat kidney transplantation

  Wang, X., Xu, M., Jia, J., Zhang, Z., Gaut, J. P., Upadhya, G. A., Manning, P. T., Lin, Y. & Chapman, W. C., Apr 2018, In: American Journal of Transplantation. 18, 4, p. 843-854 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Reperfusion Injury 100%
  • Kidney Transplantation 97%
  • dicarboxydine 87%
  • Monoclonal Antibodies 75%
  • Kidney 36%
  15 Scopus citations

• Deep learning global glomerulosclerosis in transplant kidney frozen sections

  Marsh, J. N., Matlock, M. K., Kudose, S., Liu, T. C., Stappenbeck, T. S., Gaut, J. P. & Swamidass, S. J., Dec 2018, In: IEEE Transactions on Medical Imaging. 37, 12, p. 2718-2728 11 p., 8398488.

  Research output: Contribution to journal › Article › peer-review

  • Transplants 100%
  • Deep Learning 96%
  • Frozen Sections 77%
  • Deep learning 62%
  • Biopsy 40%
  97 Scopus citations

• Flow Preservation of Umbilical Vein for Autologous Shunt and Cardiovascular Reconstruction

  Hoganson, D. M., Cooper, D. A., Rich, K. N., Piekarski, B. L., Gui, L., Gaut, J. P., Mayer, J. E., Aikawa, E., Niklason, L. E. & Emani, S. M., Jun 2018, In: Annals of Thoracic Surgery. 105, 6, p. 1809-1818 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Umbilical Veins 100%
  • University of Wisconsin-lactobionate solution 43%
  • Blood Platelets 30%
  • Pressure 25%
  • Electron Scanning Microscopy 25%
  2 Scopus citations

• Quantification of vascular damage in acute kidney injury with fluorine magnetic resonance imaging and spectroscopy

  Moore, J. K., Chen, J., Pan, H., Gaut, J. P., Jain, S. & Wickline, S. A., Jun 2018, In: Magnetic resonance in medicine. 79, 6, p. 3144-3153 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Fluorine 100%
  • Acute Kidney Injury 67%
  • Magnetic Resonance Spectroscopy 60%
  • Nanoparticles 50%
  • Magnetic Resonance Imaging 47%
  14 Scopus citations

• Renal Histopathologic Findings Associated with Severity of Clinical Acute Kidney Injury

  Kudose, S., Hoshi, M., Jain, S. & Gaut, J. P., 2018, In: American Journal of Surgical Pathology. 42, 5, p. 625-635 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Acute Kidney Injury 100%
  • Kidney 56%
  • Wounds and Injuries 45%
  • Biopsy 21%
  • Kidney Diseases 12%
  16 Scopus citations