Joseph Gaut

2025

Label-free multimodal optical biopsy reveals biomolecular and morphological features of diabetic kidney tissue in 2D and 3D

Fung, A. A., Li, Z., Boote, C., Markov, P., Gaut, J. P., Jain, S. & Shi, L., Dec 2025, In: Nature communications. 16, 1, 4509.

Research output: Contribution to journal › Article › peer-review

2024

A Case of Congenital Nephrotic Syndrome with Crescents Caused by a Novel Compound Heterozygous Pairing of NPHS1 Genetic Variants

Goodman, K. N., Puapatanakul, P., Barton, K. T., He, M., Miner, J. H. & Gaut, J. P., 2024, In: Case Reports in Nephrology. 2024, 5121375.

Research output: Contribution to journal › Article › peer-review

Open Access

Association of COVID-19 Versus COVID-19 Vaccination With Kidney Function and Disease Activity in Primary Glomerular Disease: A Report of the Cure Glomerulonephropathy Study

Cure Glomerulonephropathy (CureGN) Study Consortium, Dharnidharka, V., Gaut, J. & Brathwaite, K., Jan 2024, In: American Journal of Kidney Diseases. 83, 1, p. 37-46 10 p.

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Clinical Utility of LC-MS/MS for Blood Myo-Inositol in Patients with Acute Kidney Injury and Chronic Kidney Disease

Omosule, C. L., Blair, C. J., Herries, E., Zaydman, M. A., Farnsworth, C., Ladenson, J., Dietzen, D. & Gaut, J., Sep 1 2024, In: Clinical chemistry. 70, 9, p. 1172-1181 10 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Correction to: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) (Nature Cell Biology, (2023), 25, 8, (1089-1100), 10.1038/s41556-023-01194-w)

HuBMAP Consortium, Jain, S., Pei, L., Spraggins, J. M., Angelo, M., Carson, J. P., Gehlenborg, N., Ginty, F., Gonçalves, J. P., Hagood, J. S., Hickey, J. W., Kelleher, N. L., Laurent, L. C., Lin, S., Lin, Y., Liu, H., Naba, A., Nakayasu, E. S., Qian, W. J. & Radtke, A. & 181 others, Robson, P., Stockwell, B. R., Van de Plas, R., Vlachos, I. S., Zhou, M., Börner, K., Snyder, M. P., Ahn, K. J., Allen, J., Anderson, D. M., Anderton, C. R., Curcio, C., Angelin, A., Arvanitis, C., Atta, L., Awosika-Olumo, D., Bahmani, A., Bai, H., Balderrama, K., Balzano, L., Bandyopadhyay, G., Bandyopadhyay, S., Bar-Joseph, Z., Barnhart, K., Barwinska, D., Becich, M., Becker, L., Becker, W., Bedi, K., Bendall, S., Benninger, K., Betancur, D., Bettinger, K., Billings, S., Blood, P., Bolin, D., Border, S., Bosse, M., Bramer, L., Brewer, M., Brusko, M., Bueckle, A., Burke, K., Burnum-Johnson, K., Butcher, E., Butterworth, E., Cai, L., Calandrelli, R., Caldwell, M., Campbell-Thompson, M., Cao, D., Cao-Berg, I., Caprioli, R., Caraccio, C., Caron, A., Carroll, M., Chadwick, C., Chen, A., Chen, D., Chen, F., Chen, H., Chen, J., Chen, L., Chen, L., Chiacchia, K., Cho, S., Chou, P., Choy, L., Cisar, C., Clair, G., Clarke, L., Clouthier, K. A., Colley, M. E., Conlon, K., Conroy, J., Contrepois, K., Corbett, A., Corwin, A., Cotter, D., Courtois, E., Cruz, A., Csonka, C., Czupil, K., Daiya, V., Dale, K., Davanagere, S. A., Dayao, M., de Caestecker, M. P., Decker, A., Deems, S., Degnan, D., Desai, T., Deshpande, V., Deutsch, G., Devlin, M., Diep, D., Dodd, C., Donahue, S., Dong, W., dos Santos Peixoto, R., Duffy, M., Dufresne, M., Duong, T. E., Dutra, J., Eadon, M. T., El-Achkar, T. M., Enninful, A., Eraslan, G., Eshelman, D., Espin-Perez, A., Esplin, E. D., Esselman, A., Falo, L. D., Falo, L., Fan, J., Fan, R., Farrow, M. A., Farzad, N., Favaro, P., Fermin, J., Filiz, F., Filus, S., Fisch, K., Fisher, E., Fisher, S., Flowers, K., Flynn, W. F., Fogo, A. B., Fu, D., Fulcher, J., Fung, A., Furst, D., Gallant, M., Gao, F., Gao, Y., Gaulton, K., Gaut, J. P., Gee, J., Ghag, R. R., Ghazanfar, S., Ghose, S., Gisch, D., Gold, I., Gondalia, A., Gorman, B., Greenleaf, W., Greenwald, N., Gregory, B., Guo, R., Gupta, R., Hakimian, H., Haltom, J., Halushka, M., Han, K. S., Hanson, C., Harbury, P., Hardi, J., Harlan, L., Harris, R. C., Hartman, A., Heidari, E., Helfer, J., Helminiak, D., Hemberg, M., Henning, N., Herr, B. W., Ho, J., Holden-Wiltse, J., Hong, S. H., Hong, Y. K., Honick, B., Hood, G., Hu, P., Hu, Q., Huang, M., Huyck, H., Imtiaz, T., Isberg, O. G., Itkin, M., Jackson, D. & Jacobs, M., May 2024, In: Nature Cell Biology. 26, 5, p. 839 1 p.

Research output: Contribution to journal › Comment/debate

1 Scopus citations

Growth in children with nephrotic syndrome: a post hoc analysis of the NEPTUNE study

Members of the Nephrotic Syndrome Study Network (NEPTUNE), Sep 2024, In: Pediatric Nephrology. 39, 9, p. 2691-2701 11 p.

Research output: Contribution to journal › Article › peer-review

Longitudinal analysis of blood pressure and lipids in childhood nephrotic syndrome

on behalf of the Nephrotic Syndrome Study Network (NEPTUNE)*, Jul 2024, In: Pediatric Nephrology. 39, 7, p. 2161-2170 10 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Mapping human tissues with highly multiplexed RNA in situ hybridization

Kalhor, K., Chen, C. J., Lee, H. S., Cai, M., Nafisi, M., Que, R., Palmer, C. R., Yuan, Y., Zhang, Y., Li, X., Song, J., Knoten, A., Lake, B. B., Gaut, J. P., Keene, C. D., Lein, E., Kharchenko, P. V., Chun, J., Jain, S. & Fan, J. B. & 1 others, Zhang, K., Dec 2024, In: Nature communications. 15, 1, 2511.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Molecular Signatures of Glomerular Neovascularization in a Patient with Diabetic Kidney Disease

Kidney Precision Medicine Project, Ferkowicz, M. J., Verma, A., Barwinska, D., Melo Ferreira, R., Henderson, J. M., Kirkpatrick, M., Silva, P. S., Steenkamp, D. W., Phillips, C. L., Waikar, S. S., Sutton, T. A., Lake, B., Zhang, K., Lecker, S., Morales, A., Stillman, I., Bogen, S., Amodu, A. A. & Beck, L. & 181 others, Henderson, J., Ilori, T., Maikhor, S., Onul, I., Schmidt, I., Verma, A., Waikar, S., Yadati, P., Yu, G., Colona, M. R., McMahon, G., Weins, A., Hacohen, N., Greka, A., Hoover, P. J., Marshall, J. L., Aulisio, M., Bush, W., Chen, Y., Crawford, D., Madabhushi, A., Viswanathan, V. S., Bush, L., Cooperman, L., Gadegbeku, C., Herlitz, L., Jolly, S., Nguyen, J., O'Malley, C., O'Toole, J., Palmer, E., Poggio, E., Spates-Harden, K., Sedor, J., Sendrey, D., Taliercio, J., Appelbaum, P., Balderes, O., Barasch, J., Berroue, C., Bomback, A., Canetta, P. A., D'Agati, V., Kiryluk, K., Kudose, S., Mehl, K., Sabatello, M., Shang, N., Varela, G., De Pinho Gonçalves, J., Lardenoije, R., Migas, L., Van De Plas, R., Barisoni, L., Rennke, H., Azeloglu, E., Campbell, K., Coca, S., He, C., He, J., Iyengar, S. R., Lefferts, S., Nadkarni, G., Patel, M., Tokita, J., Ward, S., Xiong, Y., Verdoes, A., Sabo, A., Barwinska, D., Gisch, D. L., Williams, J., Kelly, K., Dunn, K., Asghari, M., Eadon, M., Ferkowicz, M., Dagher, P., Ferreira, R. M., Winfree, S., Bledsoe, S., Wofford, S., El-Achkar, T., Sutton, T., Bowen, W., Cheng, Y. H., Slade, A., Record, E., Cheng, Y., Borner, K., Herr, B., Jain, Y., Quardokus, E., Atta, M., Bernard, L., Menez, S., Parikh, C., Corona Villalobos, C. P., Wang, A., Wen, Y., Xu, A., Chen, S., Donohoe, I., Johansen, C., Rosas, S., Sun, J., Ardayfio, J., Bebiak, J., Brown, K., Campbell, T., Fox, M., Hayashi, L., Jefferson, N., Richard Knight, J. J., Koewler, R., Pinkeney, R., Saul, J., Shpigel, A., Stutzke, C., Prasad, P., Madhavan, S. M., Parikh, S., Rovin, B., Shapiro, J. P., Anderton, C., Lukowski, J., Pasa-Tolic, L., Velickovic, D., Oliver, G., Mao, W., Sealfon, R., Troyanskaya, O., Wong, A., Pollack, A., Goltsev, Y., Ginley, B., Lutnick, B., Anjani, K., Laszik, Z. G., Mukatash, T., Nolan, G., Beyda, D., Bracamonte, E., Brosius, F., Campos, B., Marquez, N., Mendoza, K., Scott, R., Thajudeen, B., Tsosie, R., Woodhead, G., Saunders, M., Alloway, R. R., Lee, P. J., Rike, A., Shi, T., Woodle, E. S., Bjornstad, P., Hsieh, E., Kendrick, J., Pyle, L., Thurman, J., Vinovskis, C., Wrobel, J., Lucarelli, N., Sarder, P., Bui, J., Carmona-Powell, E., Gaba, R., Kelly, T., Lash, J., Meza, N., Redmond, D., Renteria, A., Ricardo, A., Setty, S., Rosengart, M., Basta, J., Gaut, J., Jain, S. & Vijayan, A., Feb 2024, In: Clinical Journal of the American Society of Nephrology. 19, 2, p. 266-275 10 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project

Kidney Precision Medicine Project, Mar 2024, In: American Journal of Kidney Diseases. 83, 3, p. 402-410 9 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Role of Artificial Intelligence in Kidney Pathology: Promises and Pitfalls

Goodman, K., Sarullo, K., Swamidass, S. J., Gaut, J. P. & Jain, S., Jul 1 2024, In: Kidney360. 5, 7, p. 1044-1046 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Safety Evaluations of Rapamycin Perfluorocarbon Nanoparticles in Ovarian Tumor-Bearing Mice

Zhou, Q., Harding, J. C., Fan, P., Spasojevic, I., Kovacs, A., Akk, A., Mitchell, A., Springer, L. E., Gaut, J. P., Rauch, D. A., Wickline, S. A., Pham, C. T. N., Fuh, K. & Pan, H., Nov 2024, In: Nanomaterials. 14, 21, 1752.

Research output: Contribution to journal › Article › peer-review

The chromatin landscape of healthy and injured cell types in the human kidney

Gisch, D. L., Brennan, M., Lake, B. B., Basta, J., Keller, M. S., Melo Ferreira, R., Akilesh, S., Ghag, R., Lu, C., Cheng, Y. H., Collins, K. S., Parikh, S. V., Rovin, B. H., Robbins, L., Stout, L., Conklin, K. Y., Diep, D., Zhang, B., Knoten, A. & Barwinska, D. & 332 others, Asghari, M., Sabo, A. R., Ferkowicz, M. J., Sutton, T. A., Kelly, K. J., De Boer, I. H., Rosas, S. E., Kiryluk, K., Hodgin, J. B., Alakwaa, F., Winfree, S., Jefferson, N., Türkmen, A., Gaut, J. P., Gehlenborg, N., Phillips, C. L., El-Achkar, T. M., Dagher, P. C., Hato, T., Zhang, K., Himmelfarb, J., Kretzler, M., Mollah, S., Lake, B., Morales, A., Stillman, I., Lecker, S., Bogen, S., Verma, A., Yu, G., Schmidt, I., Henderson, J., Beck, L., Yadati, P., Waikar, S., Amodu, A. A., Maikhor, S., Ilori, T., Colona, M. R., Weins, A., McMahon, G., Hacohen, N., Greka, A., Marshall, J. L., Hoover, P. J., Viswanathan, V. S., Crawford, D., Aulisio, M., Bush, W., Chen, Y., Madabhushi, A., O’Malley, C., Gadegbeku, C., Sendrey, D., Poggio, E., O’Toole, J., Sedor, J., Taliercio, J., Bush, L., Herlitz, L., Palmer, E., Nguyen, J., Spates-Harden, K., Cooperman, L., Jolly, S., Vinovskis, C., Bomback, A., Barasch, J., Kiryluk, K., Appelbaum, P., D’Agati, V., Berrouet, C., Mehl, K., Sabatello, M., Shang, N., Balderes, O., Canetta, P. A., Kudose, S., de Pinho Gonçalves, J., Migas, L., Van de Plas, R., Lardenoije, R., Barisoni, L., Rennke, H., Verdoes, A., Sabo, A., Gisch, D. L., Williams, J., Kelly, K., Dunn, K., Eadon, M., Ferkowicz, M., Dagher, P., Winfree, S., Bledsoe, S., Wofford, S., (El-Achkar), T. A., Sutton, T., Bowen, W., Slade, A., Record, E., Cheng, Y., Jain, Y., Herr, B., Quardokus, E., Wang, A., Villalobos, C. P. C., Parikh, C., Atta, M., Menez, S., Wen, Y., Xu, A., Bernard, L., Johansen, C., Chen, S., Rosas, S., Donohoe, I., Sun, J., Knight, R., Shpigel, A., Bebiak, J., Saul, J., Ardayfio, J., Koewler, R., Pinkeney, R., Campbell, T., Azeloglu, E., Nadkarni, G., He, J., Tokita, J., Campbell, K., Patel, M., Lefferts, S., Iyengar, S. R., Ward, S., Coca, S., He, C., Xiong, Y., Prasad, P., Rovin, B., Shapiro, J. P., Parikh, S., Madhavan, S. M., Lukowski, J., Velickovic, D., Pasa-Tolic, L., Oliver, G., Troyanskaya, O., Sealfon, R., Mao, W., Wong, A., Pollack, A., Goltsev, Y., Ginley, B., Lutnick, B., Nolan, G., Anjani, K., Mukatash, T., Laszik, Z. G., Campos, B., Thajudeen, B., Beyda, D., Bracamonte, E., Brosius, F., Woodhead, G., Mendoza, K., Marquez, N., Scott, R., Tsosie, R., Saunders, M., Rike, A., Woodle, E. S., Lee, P. J., Alloway, R. R., Shi, T., Hsieh, E., Kendrick, J., Thurman, J., Wrobel, J., Pyle, L., Bjornstad, P., Lucarelli, N., Sarder, P., Renteria, A., Ricardo, A., Srivastava, A., Redmond, D., Carmona-Powell, E., Bui, J., Lash, J., Fox, M., Meza, N., Gaba, R., Setty, S., Kelly, T., Lienczewski, C., Demeke, D., Otto, E., Ascani, H., Hodgin, J., Schaub, J., Hartman, J., Mariani, L., Bitzer, M., Rose, M., Bonevich, N., Conser, N., McCown, P., Dull, R., Menon, R., Reamy, R., Eddy, S., Balis, U., Blanc, V., Nair, V., He, Y. O., Wright, Z., Steck, B., Luo, J., Frey, R., Coleman, A., Henderson-Brown, D., Berge, J., Caramori, M. L., Adeyi, O., Nachman, P., Safadi, S., Flanagan, S., Ma, S., Klett, S., Wolf, S., Harindhanavudhi, T., Rao, V., Mottl, A., Froment, A., Zeitler, E., Bream, P., Kelley, S., Rosengart, M., Elder, M., Palevsky, P., Murugan, R., Hall, D. E., Bender, F., Winters, J., Kellum, J. A., Gilliam, M., Tublin, M., Tan, R., Zhang, G., Sharma, K., Venkatachalam, M., Hendricks, A., Kermani, A., Torrealba, J., Vazquez, M., Wang, N., Cai, Q., Miller, R. T., Ma, S., Hedayati, S., Hoofnagle, A., Wangperawong, A., Berglund, A., Dighe, A. L., Young, B., Larson, B., Berry, B., Alpers, C., Limonte, C., Stutzke, C., Roberts, G., de Boer, I., Snyder, J., Phuong, J., Carson, J., Rezaei, K., Tuttle, K., Brown, K., Blank, K., Sarkisova, N., Jefferson, N., McClelland, R., Mooney, S., Nam, Y., Wilcox, A., Park, C., Dowd, F., Williams, K., Grewenow, S. M., Daniel, S., Shankland, S., Pamreddy, A., Ye, H., Montellano, R., Bansal, S., Pillai, A., Zhang, D., Park, H., Patel, J., Sambandam, K., Basit, M., Wen, N., Moe, O. W., Toto, R. D., Lee, S. C., Sharman, K., Caprioli, R. M., Fogo, A., Allen, J., Spraggins, J., Djambazova, K., de Caestecker, M., Dufresne, M., Farrow, M., Vijayan, A., Minor, B., Nwanne, G., Gaut, J., Conlon, K., Kaushal, M., Diettman, S. M., Victoria Castro, A. M., Moledina, D., Wilson, F. P., Moeckel, G., Cantley, L., Shaw, M., Kakade, V., Arora, T., Jain, S. & Rauchman, M., Dec 2024, In: Nature communications. 15, 1, 433.

Research output: Contribution to journal › Article › peer-review

18 Scopus citations

2023

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Jain, S., Pei, L., Spraggins, J. M., Angelo, M., Carson, J. P., Gehlenborg, N., Ginty, F., Gonçalves, J. P., Hagood, J. S., Hickey, J. W., Kelleher, N. L., Laurent, L. C., Lin, S., Lin, Y., Liu, H., Naba, A., Nakayasu, E. S., Qian, W. J., Radtke, A. & Robson, P. & 464 others, Stockwell, B. R., Van de Plas, R., Vlachos, I. S., Zhou, M., Ahn, K. J., Allen, J., Anderson, D. M., Anderton, C. R., Curcio, C., Angelin, A., Arvanitis, C., Atta, L., Awosika-Olumo, D., Bahmani, A., Bai, H., Balderrama, K., Balzano, L., Bandyopadhyay, G., Bandyopadhyay, S., Bar-Joseph, Z., Barnhart, K., Barwinska, D., Becich, M., Becker, L., Becker, W., Bedi, K., Bendall, S., Benninger, K., Betancur, D., Bettinger, K., Billings, S., Blood, P., Bolin, D., Border, S., Bosse, M., Bramer, L., Brewer, M., Brusko, M., Bueckle, A., Burke, K., Burnum-Johnson, K., Butcher, E., Butterworth, E., Cai, L., Calandrelli, R., Caldwell, M., Campbell-Thompson, M., Cao, D., Cao-Berg, I., Caprioli, R., Caraccio, C., Caron, A., Carroll, M., Chadwick, C., Chen, A., Chen, D., Chen, F., Chen, H., Chen, J., Chen, L., Chen, L., Chiacchia, K., Cho, S., Chou, P., Choy, L., Cisar, C., Clair, G., Clarke, L., Clouthier, K. A., Colley, M. E., Conlon, K., Conroy, J., Contrepois, K., Corbett, A., Corwin, A., Cotter, D., Courtois, E., Cruz, A., Csonka, C., Czupil, K., Daiya, V., Dale, K., Davanagere, S. A., Dayao, M., de Caestecker, M. P., Decker, A., Deems, S., Degnan, D., Desai, T., Deshpande, V., Deutsch, G., Devlin, M., Diep, D., Dodd, C., Donahue, S., Dong, W., dos Santos Peixoto, R., Duffy, M., Dufresne, M., Duong, T. E., Dutra, J., Eadon, M. T., El-Achkar, T. M., Enninful, A., Eraslan, G., Eshelman, D., Espin-Perez, A., Esplin, E. D., Esselman, A., Falo, L. D., Falo, L., Fan, J., Fan, R., Farrow, M. A., Farzad, N., Favaro, P., Fermin, J., Filiz, F., Filus, S., Fisch, K., Fisher, E., Fisher, S., Flowers, K., Flynn, W. F., Fogo, A. B., Fu, D., Fulcher, J., Fung, A., Furst, D., Gallant, M., Gao, F., Gao, Y., Gaulton, K., Gaut, J. P., Gee, J., Ghag, R. R., Ghazanfar, S., Ghose, S., Gisch, D., Gold, I., Gondalia, A., Gorman, B., Greenleaf, W., Greenwald, N., Gregory, B., Guo, R., Gupta, R., Hakimian, H., Haltom, J., Halushka, M., Han, K. S., Hanson, C., Harbury, P., Hardi, J., Harlan, L., Harris, R. C., Hartman, A., Heidari, E., Helfer, J., Helminiak, D., Hemberg, M., Henning, N., Herr, B. W., Ho, J., Holden-Wiltse, J., Hong, S. H., Hong, Y. K., Honick, B., Hood, G., Hu, P., Hu, Q., Huang, M., Huyck, H., Imtiaz, T., Isberg, O. G., Itkin, M., Jackson, D., Jacobs, M., Jain, Y., Jewell, D., Jiang, L., Jiang, Z. G., Johnston, S., Joshi, P., Ju, Y., Judd, A., Kagel, A., Kahn, A., Kalavros, N., Kalhor, K., Karagkouni, D., Karathanos, T., Karunamurthy, A., Katari, S., Kates, H., Kaushal, M., Keener, N., Keller, M., Kenney, M., Kern, C., Kharchenko, P., Kim, J., Kingsford, C., Kirwan, J., Kiselev, V., Kishi, J., Kitata, R. B., Knoten, A., Kollar, C., Krishnamoorthy, P., Kruse, A. R. S., Da, K., Kundaje, A., Kutschera, E., Kwon, Y., Lake, B. B., Lancaster, S., Langlieb, J., Lardenoije, R., Laronda, M., Laskin, J., Lau, K., Lee, H., Lee, M., Lee, M., Strekalova, Y. L., Li, D., Li, J., Li, J., Li, X., Li, Z., Liao, Y. C., Liaw, T., Lin, P., Lin, Y., Lindsay, S., Liu, C., Liu, Y., Liu, Y., Lott, M., Lotz, M., Lowery, L., Lu, P., Lu, X., Lucarelli, N., Lun, X., Luo, Z., Ma, J., Macosko, E., Mahajan, M., Maier, L., Makowski, D., Malek, M., Manthey, D., Manz, T., Margulies, K., Marioni, J., Martindale, M., Mason, C., Mathews, C., Maye, P., McCallum, C., McDonough, E., McDonough, L., Mcdowell, H., Meads, M., Medina-Serpas, M., Ferreira, R. M., Messinger, J., Metis, K., Migas, L. G., Miller, B., Mimar, S., Minor, B., Misra, R., Missarova, A., Mistretta, C., Moens, R., Moerth, E., Moffitt, J., Molla, G., Monroe, M., Monte, E., Morgan, M., Muraro, D., Murphy, B., Murray, E., Musen, M. A., Naglah, A., Nasamran, C., Neelakantan, T., Nevins, S., Nguyen, H., Nguyen, N., Nguyen, T., Nguyen, T., Nigra, D., Nofal, M., Nolan, G., Nwanne, G., O’Connor, M., Okuda, K., Olmer, M., O’Neill, K., Otaluka, N., Pang, M., Parast, M., Pasa-Tolic, L., Paten, B., Patterson, N. H., Peng, T., Phillips, G., Pichavant, M., Piehowski, P., Pilner, H., Pingry, E., Pita-Juarez, Y., Plevritis, S., Ploumakis, A., Pouch, A., Pryhuber, G., Puerto, J., Qaurooni, D., Qin, L., Quardokus, E. M., Rajbhandari, P., Rakow-Penner, R., Ramasamy, R., Read, D., Record, E. G., Reeves, D., Ricarte, A., Rodríguez-Soto, A., Ropelewski, A., Rosario, J., Roselkis, M. A., Rowe, D., Roy, T. K., Ruffalo, M., Ruschman, N., Sabo, A., Sachdev, N., Saka, S., Salamon, D., Sarder, P., Sasaki, H., Satija, R., Saunders, D., Sawka, R., Schey, K., Schlehlein, H., Scholten, D., Schultz, S., Schwartz, L., Schwenk, M., Scibek, R., Segre, A., Serrata, M., Shands, W., Shen, X., Shendure, J., Shephard, H., Shi, L., Shi, T., Shin, D. G., Shirey, B., Sibilla, M., Silber, M., Silverstein, J., Simmel, D., Simmons, A., Singhal, D., Sivajothi, S., Smits, T., Soncin, F., Song, Q., Stanley, V., Stuart, T., Su, H., Su, P., Sun, X., Surrette, C., Swahn, H., Tan, K., Teichmann, S., Tejomay, A., Tellides, G., Thomas, K., Thomas, T., Thompson, M., Tian, H., Tideman, L., Trapnell, C., Tsai, A. G., Tsai, C. F., Tsai, L., Tsui, E., Tsui, T., Tung, J., Turner, M., Uranic, J., Vaishnav, E. D., Varra, S. R., Vaskivskyi, V., Velickovic, D., Velickovic, M., Verheyden, J., Waldrip, J., Wallace, D., Wan, X., Wang, A., Wang, F., Wang, M., Wang, S., Wang, X., Wasserfall, C., Wayne, L., Webber, J., Weber, G. M., Wei, B., Wei, J. J., Weimer, A., Welling, J., Wen, X., Wen, Z., Williams, M. K., Winfree, S., Winograd, N., Woodard, A., Wright, D., Wu, F., Wu, P. H., Wu, Q., Wu, X., Xing, Y., Xu, T., Yang, M., Yang, M., Yap, J., Ye, D. H., Yin, P., Yuan, Z., Yun, C., Zahraei, A., Zemaitis, K., Zhang, B., Zhang, C., Zhang, C., Zhang, C., Zhang, K., Zhang, S., Zhang, T., Zhang, Y., Zhao, B., Zhao, W., Zheng, J. W., Zhong, S., Zhu, B., Zhu, C., Zhu, D., Zhu, Q., Zhu, Y., Börner, K. & Snyder, M. P., Aug 2023, In: Nature Cell Biology. 25, 8, p. 1089-1100 12 p.

Research output: Contribution to journal › Article › peer-review

66 Scopus citations

Age of Onset and Disease Course in Biopsy-Proven Minimal Change Disease: An Analysis From the Cure Glomerulonephropathy Network

CureGN Consortium, Dharnidharka, V., Gaut, J. & Brathwaite, K., Jun 2023, In: American Journal of Kidney Diseases. 81, 6, p. 695-706.e1

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

An atlas of healthy and injured cell states and niches in the human kidney

KPMP Consortium, Jul 20 2023, In: Nature. 619, 7970, p. 585-594 10 p.

Research output: Contribution to journal › Article › peer-review

241 Scopus citations

A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease

the Kidney Precision Medicine Project, Dec 2023, In: Nature communications. 14, 1, 4140.

Research output: Contribution to journal › Article › peer-review

Open Access

38 Scopus citations

Characterization of Glomerular and Tubulointerstitial Proteomes in a Case of Nonsteroidal Anti-Inflammatory Drug–Attributed Acute Kidney Injury A Clinical Pathologic Molecular Correlation

the Kidney Precision Medicine Project, Mar 2023, In: Clinical Journal of the American Society of Nephrology. 18, 3, p. 402-410 9 p.

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Cure Glomerulonephropathy Pathology Classification and Core Scoring Criteria, Reproducibility, and Clinicopathologic Correlations

CureGN Consortium, Jan 2023, In: Glomerular Diseases. 3, 1, p. 248-257 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

International Society of Nephrology first consensus guidance for preclinical animal studies in translational nephrology

the TRANSFORM group, Humphreys, B. D., Gaut, J., Gewin, L. & Miner, J. H., Jul 2023, In: Kidney International. 104, 1, p. 36-45 10 p.

Research output: Contribution to journal › Article › peer-review

19 Scopus citations

Racial and Ethnic Disparities in Acute Care Utilization Among Patients With Glomerular Disease

CureGN Consortium, Brathwaite, K. E., Dharnidharka, V. & Gaut, J., Mar 2023, In: American Journal of Kidney Diseases. 81, 3, p. 318-328.e1

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Rapamycin Perfluorocarbon Nanoparticle Mitigates Cisplatin-Induced Acute Kidney Injury

Zhou, Q., Quirk, J. D., Hu, Y., Yan, H., Gaut, J. P., Pham, C. T. N., Wickline, S. A. & Pan, H., Apr 2023, In: International journal of molecular sciences. 24, 7, 6086.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Time to Abandon Renalism Patients with Kidney Diseases Deserve More

Gaut, J. P., 2023, In: Clinical Journal of the American Society of Nephrology. 18, 4, p. 419-420 2 p.

Research output: Contribution to journal › Comment/debate

Open Access

3 Scopus citations

2022

A glomerular transcriptomic landscape of apolipoprotein L1 in Black patients with focal segmental glomerulosclerosis

Nephrotic Syndrome Study Network (NEPTUNE), Jul 2022, In: Kidney International. 102, 1, p. 136-148 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

A Participant-Centered Approach to Understanding Risks and Benefits of Participation in Research Informed by the Kidney Precision Medicine Project

Kidney Precision Medicine Project, Jul 2022, In: American Journal of Kidney Diseases. 80, 1, p. 132-138 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology

the Kidney Precision Medicine Project, Lutnick, B., Manthey, D., Becker, J. U., Ginley, B., Moos, K., Zuckerman, J. E., Rodrigues, L., Gallan, A. J., Barisoni, L., Alpers, C. E., Wang, X. X., Myakala, K., Jones, B. A., Levi, M., Kopp, J. B., Yoshida, T., Zee, J., Han, S. S. & Jain, S. & 181 others, Rosenberg, A. Z., Jen, K. Y., Sarder, P., Lutnick, B., Ginley, B., Knight, R., Lecker, S. H., Stillman, I., Bogen, S., Amodu, A. A., Ilori, T., Schmidt, I., Maikhor, S., Beck, L. H., Verma, A., Henderson, J. M., Onul, I., Waikar, S., McMahon, G. M., Weins, A., Colona, M. R., Valerius, M. T., Hacohen, N., Hoover, P. J., Greka, A., Marshall, J. L., Aulisio, M., Chen, Y. M., Janowczyk, A., Jayapandian, C., Viswanathan, V. S., Bush, W. S., Crawford, D. C., Madabhushi, A., O’toole, J., Poggio, E., Sedor, J., Cooperman, L., Jolly, S., Herlitz, L., Nguyen, J., Gonzalez-Vicente, A., Palmer, E., Sendrey, D., Taliercio, J., Bush, L., Spates-Harden, K., Vinovskis, C., Bjornstad, P. M., Pyle, L., Appelbaum, P., Barasch, J. M., Bomback, A. S., D’Agati, V. D., Kiryluk, K., Mehl, K., Canetta, P. A., Shang, N., Balderes, O., Kudose, S., Alexandrov, T., Rennke, H., El-Achkar, T. M., Cheng, Y., Dagher, P. C., Eadon, M. T., Dunn, K. W., Kelly, K. J., Sutton, T. A., Barwinska, D., Ferkowicz, M. J., Winfree, S., Bledsoe, S., Rivera, M., Williams, J. C., Ferreira, R. M., Borner, K., Bueckle, A., Herr, B. W., Quardokus, E. M., Record, E., Su, J., Gisch, D., Wofford, S., Jain, Y., Parikh, C. R., Corona-Villalobos, C. P., Menez, S., Wen, Y., Johansen, C., Rosas, S. E., Roy, N., Williams, M., Sun, J., Ardayfio, J., Bebiak, J., Brown, K., Campbell, C. E., Saul, J., Shpigel, A., Stutzke, C., Koewler, R., Campbell, T., Hayashi, L., Jefferson, N., Roberts, G. V., Pinkeney, R., Azeloglu, E. U., He, C., Iyengar, R., Hansen, J., Xiong, Y., Prasad, P., Srivastava, A., Rovin, B., Parikh, S., Shapiro, J. P., Madhavan, S. M., Anderton, C. R., Pasa-Tolic, L., Velickovic, D., Lukowski, J., Oliver, G. H., Troyanskaya, O., Sealfon, R., Wong, A., Tuttle, K. R., Pollack, A., Goltsev, Y., Zhang, K., Lake, B. B., Laszik, Z. G., Nolan, G., Boada, P., Sarwal, M., Anjani, K., Sigdel, T., Mukatash, T., Lee, P. J., Alloway, R. R., Woodle, E. S., Burg, A. R., Rike, A., Shi, T., Ascani, H., Balis, U. G. J., Hodgin, J. B., Kretzler, M., Lienczewski, C., Mariani, L. H., Menon, R., Steck, B., He, Y., Otto, E., Schaub, J., Blanc, V. M., Eddy, S., Conser, N. C., Luo, J., Frey, R., Palevsky, P. M., Rosengart, M., Kellum, J. A., Hall, D. E., Randhawa, P., Tublin, M., Murugan, R., Elder, M. M., Winters, J., Vita, T., Bender, F., Tan, R., Gilliam, M., Blank, K. N., Carson, J., De Boer, I. H., Dighe, A. L., Shankland, S., Vijayan, A., Gaut, J. P. & Rauchman, M. I., Dec 2022, In: Communications Medicine. 2, 1, 105.

Research output: Contribution to journal › Article › peer-review

Open Access

24 Scopus citations

Integrated single-cell sequencing and histopathological analyses reveal diverse injury and repair responses in a participant with acute kidney injury: a clinical-molecular-pathologic correlation

Kidney Precision Medicine Project, Jun 2022, In: Kidney International. 101, 6, p. 1116-1125 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Kidney Biopsy Features Most Predictive of Clinical Outcomes in the Spectrum of Minimal Change Disease and Focal Segmental Glomerulosclerosis

the Nephrotic Syndrome Study Network (NEPTUNE), Jul 2022, In: Journal of the American Society of Nephrology. 33, 7, p. 1411-1426 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

30 Scopus citations

Quantification of Glomerular Structural Lesions: Associations With Clinical Outcomes and Transcriptomic Profiles in Nephrotic Syndrome

Nephrotic Syndrome Study Network (NEPTUNE), Jun 2022, In: American Journal of Kidney Diseases. 79, 6, p. 807-819.e1

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

The potential of artificial intelligence-based applications in kidney pathology

Bullow, R. D., Marsh, J. N., Swamidass, S. J., Gaut, J. P. & Boor, P., May 1 2022, In: Current Opinion in Nephrology and Hypertension. 31, 3, p. 251-257 7 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

11 Scopus citations

Virus-related collapsing glomerulopathy, a common mechanism of injury?

Gaut, J. P., May 2022, In: Kidney International. 101, 5, p. 880-882 3 p.

Research output: Contribution to journal › Comment/debate

2021

Acute kidney injury pathology and pathophysiology: A retrospective review

Gaut, J. P. & Liapis, H., Feb 1 2021, In: Clinical Kidney Journal. 14, 2, p. 526-536 11 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

73 Scopus citations

A multimodal and integrated approach to interrogate human kidney biopsies with rigor and reproducibility: Guidelines from the kidney precision medicine project

Kidney Precision Medicine Project, 2021, In: Physiological genomics. 53, 1, p. 1-11 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

53 Scopus citations

A Pilot Study of Urine Proteomics in COVID-19–Associated Acute Kidney Injury

Ye, Y., Swensen, A. C., Wang, Y., Kaushal, M., Salamon, D., Knoten, A., Nicora, C. D., Marks, L., Gaut, J. P., Vijayan, A., Orton, D. J., Mudd, P. A., Parikh, C. R., Qian, W. J., O'Halloran, J. A., Piehowski, P. D. & Jain, S., Dec 2021, In: Kidney International Reports. 6, 12, p. 3064-3069 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

A Week of Nightly Fevers in a 10-year-old Girl

Kreienkamp, R. J., Schmitt, E. G., Gaut, J. & Stotter, B. R., Dec 1 2021, In: Pediatrics in Review. 42, 12, p. 694-697 4 p.

Research output: Contribution to journal › Article › peer-review

Cadherin-11, Sparc-related modular calcium binding protein-2, and Pigment epithelium-derived factor are promising non-invasive biomarkers of kidney fibrosis

Kidney Precision Medicine Project (KPMP), Sep 2021, In: Kidney International. 100, 3, p. 672-683 12 p.

Research output: Contribution to journal › Article › peer-review

32 Scopus citations

Development and Validation of a Deep Learning Model to Quantify Glomerulosclerosis in Kidney Biopsy Specimens

Marsh, J. N., Liu, T. C., Wilson, P. C., Swamidass, S. J. & Gaut, J. P., Jan 20 2021, In: JAMA Network Open. 4, 1, 30939.

Research output: Contribution to journal › Article › peer-review

Open Access

38 Scopus citations

IL-7 Immunotherapy in a Nonimmunocompromised Patient With Intractable Fungal Wound Sepsis

Turnbull, I. R., Mazer, M. B., Hoofnagle, M. H., Kirby, J. P., Leonard, J. M., Mejia-Chew, C., Spec, A., Blood, J., Miles, S. M., Ransom, E. M., Potter, R. F., Gaut, J. P., Remy, K. E. & Hotchkiss, R. S., Jun 1 2021, In: Open Forum Infectious Diseases. 8, 6, ofab256.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline

for the Kidney Precision Medicine Project, May 2021, In: Laboratory Investigation. 101, 5, p. 661-676 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

Patient perspectives and involvement in precision medicine research

Kidney Precision Medicine Project, Mar 2021, In: Kidney International. 99, 3, p. 511-514 4 p.

Research output: Contribution to journal › Comment/debate

9 Scopus citations

Rationale and design of the Kidney Precision Medicine Project

Kidney Precision Medicine Project, Mar 2021, In: Kidney International. 99, 3, p. 498-510 13 p.

Research output: Contribution to journal › Comment/debate

111 Scopus citations

Redefining the Laboratory Approach to Acute Kidney Injury Investigation

Gaut, J. P., Sep 1 2021, In: The journal of applied laboratory medicine. 6, 5, p. 1105-1108 4 p.

Research output: Contribution to journal › Editorial

Open Access

Single-cell spatial proteomic revelations on the multiparametric MRI heterogeneity of clinically significant prostate cancer

Pachynski, R. K., Kim, E. H., Miheecheva, N., Kotlov, N., Ramachandran, A., Postovalova, E., Galkin, I., Svekolkin, V., Lyu, Y., Zou, Q., Cao, D., Gaut, J., Ippolito, J. E., Bagaev, A., Bruttan, M., Gancharova, O., Nomie, K., Tsiper, M., Andriole, G. L. & Ataullakhanov, R. & 1 others, Hsieh, J. J., Jun 2021, In: Clinical Cancer Research. 27, 12, p. 3478-3490 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

20 Scopus citations

Sustained local inhibition of thrombin preserves renal microarchitecture and function after onset of acute kidney injury

Vargas, I., Stephenson, D. J., Baldwin, M., Gaut, J., Chalfant, C. E., Pan, H. & Wickline, S. A., Nov 2021, In: Nanomedicine: Nanotechnology, Biology, and Medicine. 38, 102449.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

2020

Beyond Panel-Based Testing: Exome Analysis Increases Sensitivity for Diagnosis of Genetic Kidney Disease

Wilson, P. C., Love-Gregory, L., Corliss, M., Mcnulty, S., Heusel, J. W. & Gaut, J. P., Aug 1 2020, In: Kidney360. 1, 8, p. 772-780 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Deep learning quantification of percent steatosis in donor liver biopsy frozen sections

Sun, L., Marsh, J. N., Matlock, M. K., Chen, L., Gaut, J. P., Brunt, E. M., Swamidass, S. J. & Liu, T. C., Oct 2020, In: EBioMedicine. 60, 103029.

Research output: Contribution to journal › Article › peer-review

Open Access

45 Scopus citations

Harnessing Expressed Single Nucleotide Variation and Single Cell RNA Sequencing to Define Immune Cell Chimerism in the Rejecting Kidney Transplant

Malone, A. F., Wu, H., Fronick, C., Fulton, R., Gaut, J. P. & Humphreys, B. D., Sep 2020, In: Journal of the American Society of Nephrology. 31, 9, p. 1977-1986 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

77 Scopus citations

The longitudinal relationship between patient-reported outcomes and clinical characteristics among patients with focal segmental glomerulosclerosis in the nephrotic syndrome study network

Nephrotic Syndrome Study Network, 2020, In: Clinical Kidney Journal. 13, 4, p. 597-606 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

2019

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys

Lake, B. B., Chen, S., Hoshi, M., Plongthongkum, N., Salamon, D., Knoten, A., Vijayan, A., Venkatesh, R., Kim, E. H., Gao, D., Gaut, J., Zhang, K. & Jain, S., Dec 1 2019, In: Nature communications. 10, 1, 2832.

Research output: Contribution to journal › Article › peer-review

Open Access

201 Scopus citations

CureGN Study Rationale, Design, and Methods: Establishing a Large Prospective Observational Study of Glomerular Disease

CureGN Consortium, Mariani, L. H., Bomback, A. S., Canetta, P. A., Flessner, M. F., Helmuth, M., Hladunewich, M. A., Hogan, J. J., Kiryluk, K., Nachman, P. H., Nast, C. C., Rheault, M. N., Rizk, D. V., Trachtman, H., Wenderfer, S. E., Bowers, C., Hill-Callahan, P., Marasa, M., Poulton, C. J. & Revell, A. & 32 others, Vento, S., Barisoni, L., Cattran, D., D'Agati, V., Jennette, J. C., Klein, J. B., Laurin, L. P., Twombley, K., Falk, R. J., Gharavi, A. G., Gillespie, B. W., Gipson, D. S., Greenbaum, L. A., Holzman, L. B., Kretzler, M., Robinson, B., Smoyer, W. E., Guay-Woodford, L. M., Ahn, W., Appel, G. B., Babayev, R., Batal, I., Brown, E., Campenot, E. S., Canetta, P., Carlassara, L., Chan, B., Chatterjee, D., D'Agati, V. D., Delbarba, E., Gaut, J. & Nickolas, T., Feb 2019, In: American Journal of Kidney Diseases. 73, 2, p. 218-229 12 p.

Research output: Contribution to journal › Article › peer-review

91 Scopus citations

Joseph Gaut

Research output

Search results