Jeremy Buhler

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Jeremy Buhler

Professor of Computer Science & Engineering, Master's Program Director in CSE, Professor of Genetics, Professor of Biology

 https://orcid.org/0000-0002-4159-4226

    Willing to Mentor

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    PhD/MSTP Students

    • 3370
      Citations
    1997 …2024

    Research activity per year

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    • 2024

      Elastic Scheduling for Harmonic Task Systems

      Sudvarg, M., Li, A., Wang, D., Baruah, S., Buhler, J., Gill, C., Zhang, N. & Ekberg, P., 2024, Proceedings - 2024 IEEE 30th Real-Time and Embedded Technology and Applications Symposium, RTAS 2024. Institute of Electrical and Electronics Engineers Inc., p. 334-347 14 p. (Proceedings of the IEEE Real-Time and Embedded Technology and Applications Symposium, RTAS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      5 Scopus citations

    • HLS Taking Flight: Toward Using High-Level Synthesis Techniques in a Space-Borne Instrument

      Sudvarg, M., Zhao, C., Htet, Y., Konst, M., Lang, T., Song, N., Chamberlain, R. D., Buhler, J. & Buckley, J. H., May 7 2024, Proceedings of the 21st ACM International Conference on Computing Frontiers, CF 2024. Association for Computing Machinery, Inc, p. 115-125 11 p. (Proceedings of the 21st ACM International Conference on Computing Frontiers, CF 2024).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      3 Scopus citations

    • Machine Learning Aboard the ADAPT Gamma-Ray Telescope

      Htet, Y., Sudvarg, M., Butzel, A., Buhler, J. D., Chamberlain, R. D. & Buckley, J. H., 2024, Proceedings of SC 2024-W: Workshops of the International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 4-10 7 p. (Proceedings of SC 2024-W: Workshops of the International Conference for High Performance Computing, Networking, Storage and Analysis).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Subtask-Level Elastic Scheduling

      Sudvarg, M., Wang, D., Buhler, J. & Gill, C., 2024, Proceedings - 2024 IEEE Real-Time Systems Symposium, RTSS 2024. Institute of Electrical and Electronics Engineers Inc., p. 388-401 14 p. (Proceedings - Real-Time Systems Symposium).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • The Advanced Particle-astrophysics Telescope (APT): Computation in Space

      Buckley, J. H., Buhler, J. & Chamberlain, R. D., May 7 2024, Proceedings of the 21st ACM International Conference on Computing Frontiers 2024 Workshops and Special Sessions, CF 2024 Companion. Association for Computing Machinery, Inc, p. 122-127 6 p. (Proceedings of the 21st ACM International Conference on Computing Frontiers 2024 Workshops and Special Sessions, CF 2024 Companion).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      2 Scopus citations
    • 2023

      Localization of Gamma-ray Bursts in a Balloon-Borne Telescope

      Htet, Y., Sudvarg, M., Buhler, J., Chamberlain, R. & Buckley, J., Nov 12 2023, Proceedings of 2023 SC Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC Workshops 2023. Association for Computing Machinery, p. 395-398 4 p. (ACM International Conference Proceeding Series).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
      4 Scopus citations

    • Parameterized Workload Adaptation for Fork-Join Tasks with Dynamic Workloads and Deadlines

      Sudvarg, M., Buhler, J., Chamberlain, R. D., Gill, C., Buckley, J. & Chen, W., 2023, Proceedings - 2023 IEEE 29th International Conference on Embedded and Real-Time Computing Systems and Applications, RTCSA 2023. Institute of Electrical and Electronics Engineers Inc., p. 232-242 11 p. (Proceedings - 2023 IEEE 29th International Conference on Embedded and Real-Time Computing Systems and Applications, RTCSA 2023).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      5 Scopus citations
    • 2021

      A Scalable Approximation Algorithm for Weighted Longest Common Subsequence

      Buhler, J., Lavastida, T., Lu, K. & Moseley, B., 2021, Euro-Par 2021: Parallel Processing - 27th International Conference on Parallel and Distributed Computing, Proceedings. Sousa, L., Roma, N. & Tomás, P. (eds.). Springer Science and Business Media Deutschland GmbH, p. 368-384 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12820 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Enabling real-time irregular data-flow pipelines on SIMD Devices

      Plano, T. & Buhler, J., Aug 9 2021, 50th International Conference on Parallel Processing Workshop, ICPP 2021 - Proceedings. Association for Computing Machinery, (ACM International Conference Proceeding Series).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access

    • Platform Agnostic Streaming Data Application Performance Models

      Faber, C. J., Plano, T., Kodali, S., Xiao, Z., Dwaraki, A., Buhler, J. D., Chamberlain, R. D. & Cabrera, A. M., 2021, Proceedings of RSDHA 2021: Redefining Scalability for Diversely Heterogeneous Architectures, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 17-26 10 p. (Proceedings of RSDHA 2021: Redefining Scalability for Diversely Heterogeneous Architectures, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      3 Scopus citations

    • Supporting Multi-messenger Astrophysics with Fast Gamma-ray Burst Localization

      Wheelock, J., Kanu, W., Sudvarg, M., Xiao, Z., Buhler, J. D., Chamberlain, R. D. & Buckley, J. H., 2021, Proceedings of UrgentHPC 2021: 3rd International Workshop on HPC for Urgent Decision Making, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 21-28 8 p. (Proceedings of UrgentHPC 2021: 3rd International Workshop on HPC for Urgent Decision Making, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      4 Scopus citations

    • Toward Evaluating High-Level Synthesis Portability and Performance between Intel and Xilinx FPGAs

      Cabrera, A. M., Young, A. R., Lambert, J., Xiao, Z., An, A., Lee, S., Jin, Z., Kim, J., Buhler, J., Chamberlain, R. D. & Vetter, J. S., Apr 27 2021, International Workshop on OpenCL, IWOCL 2021. Association for Computing Machinery, 7. (ACM International Conference Proceeding Series).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      1 Scopus citations
    • 2020

      Reducing Queuing Impact in Irregular Data Streaming Applications

      Timcheck, S. W. & Buhler, J. D., Nov 2020, Proceedings of IA3 2020: 10th Workshop on Irregular Applications: Architectures and Algorithms, Held in conjunction with SC 2020: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 22-30 9 p. 9407261. (Proceedings of IA3 2020: 10th Workshop on Irregular Applications: Architectures and Algorithms, Held in conjunction with SC 2020: The International Conference for High Performance Computing, Networking, Storage and Analysis).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      2 Scopus citations

    • Scheduling irregular dataflow pipelines on SIMD architectures

      Plano, T. & Buhler, J., Feb 22 2020, WPMVP 2020 - Proceedings of the 2020 6th Workshop on Programming Models for SIMD/Vector Processing, co-located with PPoPP 2020. Eitzinger, J. & Lacassagne, L. (eds.). Association for Computing Machinery, Inc, (WPMVP 2020 - Proceedings of the 2020 6th Workshop on Programming Models for SIMD/Vector Processing, co-located with PPoPP 2020).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      5 Scopus citations
    • 2017

      Mercator: A GPGPU framework for irregular streaming applications

      Cole, S. V. & Buhler, J., Sep 12 2017, Proceedings - 2017 International Conference on High Performance Computing and Simulation, HPCS 2017. Smari, W. W. (ed.). Institute of Electrical and Electronics Engineers Inc., p. 727-736 10 p. 8035150. (Proceedings - 2017 International Conference on High Performance Computing and Simulation, HPCS 2017).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      9 Scopus citations
    • 2015

      Deadlock-free buffer configuration for stream computing

      Li, P., Beard, J. & Buhler, J., Feb 7 2015, Proceedings of the 6th International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2015. Balaji, P., Guo, M. & Huang, Z. (eds.). Association for Computing Machinery, p. 164-169 6 p. (Proceedings of the 6th International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2015).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      4 Scopus citations
    • 2014

      Orchestrating safe streaming computations with precise control

      Li, P., Agrawal, K., Buhler, J. & Chamberlain, R. D., 2014, 2014 20th IEEE International Conference on Parallel and Distributed Systems, ICPADS 2014 - Proceedings. IEEE Computer Society, p. 1017-1022 6 p. 7097925. (Proceedings of the International Conference on Parallel and Distributed Systems - ICPADS; vol. 2015-April).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      2 Scopus citations

    • Polyhedral constraints for bounded-memory execution of synchronized filtering dataflow

      Li, P. & Buhler, J., Oct 8 2014, Proceedings - 2013 3rd Workshop on Data-Flow Execution Models for Extreme Scale Computing, DFM 2013. Institute of Electrical and Electronics Engineers Inc., p. 29-37 9 p. 6919193. (Proceedings - 2013 3rd Workshop on Data-Flow Execution Models for Extreme Scale Computing, DFM 2013).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      4 Scopus citations

    • WOODSTOCC: Extracting latent parallelism from a DNA sequence aligner on a GPU

      Cole, S. V., Gardner, J. R. & Buhler, J. D., Sep 16 2014, Proceedings - IEEE 13th International Symposium on Parallel and Distributed Computing, ISPDC 2014. Muntean, T., Rolland, R. & Mugwaneza, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 197-204 8 p. 6900220. (Proceedings - IEEE 13th International Symposium on Parallel and Distributed Computing, ISPDC 2014).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
      1 Scopus citations
    • 2012

      Efficient deadlock avoidance for streaming computation with filtering

      Buhler, J. D., Agrawal, K., Li, P. & Chamberlain, R. D., 2012, PPoPP'12 - Proceedings of the 2012 ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming. p. 235-246 12 p. (Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
      4 Scopus citations

    • Flood incident management for water sensitive urban design

      Dawson, R. J., Wang, M. & Buhler, J., 2012, WSUD 2012 - 7th International Conference on Water Sensitive Urban Design: Building the Water Sensitive Community, Final Program and Abstract Book. (WSUD 2012 - 7th International Conference on Water Sensitive Urban Design: Building the Water Sensitive Community, Final Program and Abstract Book).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2011

      Bloom filter performance on graphics engines

      Ma, L., Chamberlain, R. D., Buhler, J. D. & Franklin, M. A., 2011, Proceedings - 2011 International Conference on Parallel Processing, ICPP 2011. p. 522-531 10 p. 6047220. (Proceedings of the International Conference on Parallel Processing).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      28 Scopus citations

    • Rolling partial prefix-sums to speedup evaluation of uniform and affine recurrence equations

      Ganesan, N., Chamberlain, R. D., Buhler, J. & Taufer, M., 2011, Modeling and Simulation for Defense Systems and Applications VI. 806003. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8060).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      1 Scopus citations

    • TimeTrial: A low-impact performance profiler for streaming data applications

      Lancaster, J. M., Shands, E. F. B., Buhler, J. D. & Chamberlain, R. D., 2011, Proceedings - 22nd IEEE International Conference on Application-Specific Systems, Architectures and Processors, ASAP 2011. p. 69-76 8 p. 6043238. (Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      5 Scopus citations
    • 2010

      Accelerating HMMER on GPUs by implementing hybrid data and task parallelism

      Ganesan, N., Chamberlain, R. D., Buhler, J. & Taufer, M., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 418-421 4 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      16 Scopus citations

    • Application-guided tool development for architecturally diverse computation

      Chamberlain, R. D., Buhler, J., Franklin, M. & Buckley, J. H., 2010, APPLIED COMPUTING 2010 - The 25th Annual ACM Symposium on Applied Computing. p. 496-501 6 p. (Proceedings of the ACM Symposium on Applied Computing).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      4 Scopus citations

    • Deadlock-avoidance for streaming applications with split-join structure: Two case studies

      Li, P., Agrawal, K., Buhler, J., Chamberlain, R. D. & Lancaster, J. M., 2010, ASAP 10 - 21st IEEE International Conference on Application-Specific Systems, Architectures and Processors, Conference Proceedings. p. 333-336 4 p. 5540957. (Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      12 Scopus citations

    • Deadlock avoidance for streaming computations with filtering

      Li, P., Agrawal, K., Buhler, J. & Chamberlain, R. D., 2010, SPAA'10 - Proceedings of the 22nd Annual Symposium on Parallelism in Algorithms and Architectures. p. 243-252 10 p. (Annual ACM Symposium on Parallelism in Algorithms and Architectures).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      26 Scopus citations

    • Design of throughput-optimized arrays from recurrence abstractions

      Jacob, A. C., Buhler, J. D. & Chamberlain, R. D., 2010, ASAP 10 - 21st IEEE International Conference on Application-Specific Systems, Architectures and Processors, Conference Proceedings. p. 133-140 8 p. 5540753. (Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
      3 Scopus citations

    • Rapid RNA folding: Analysis and acceleration of the Zuker recurrence

      Jacob, A. C., Buhler, J. D. & Chamberlain, R. D., 2010, Proceedings - IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2010. p. 87-94 8 p. 5474066. (Proceedings - IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2010).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
      17 Scopus citations
    • 2009

      Efficient runtime performance monitoring of FPGA-based applications

      Lancaster, J. M., Buhler, J. D. & Chamberlain, R. D., 2009, Proceedings - IEEE International SOC Conference, SOCC 2009. p. 23-28 6 p. 5398106. (Proceedings - IEEE International SOC Conference, SOCC 2009).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      9 Scopus citations

    • Optimal runtime reconfiguration strategies for systolic arrays

      Jacob, A. C., Buhler, J. D. & Chamberlain, R. D., 2009, FPL 09: 19th International Conference on Field Programmable Logic and Applications. p. 162-167 6 p. 5272515. (FPL 09: 19th International Conference on Field Programmable Logic and Applications).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      1 Scopus citations
    • 2008

      Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs

      Jacob, A., Buhler, J. & Chamberlain, R. D., 2008, ASAP08, Conference Proceedings - IEEE 19th International Conference on Application-Specific Systems, Architectures and Processors. Institute of Electrical and Electronics Engineers Inc., p. 191-196 6 p. 4580177. (Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
      35 Scopus citations
    • 2007

      A banded smith-waterman FPGA accelerator for mercury BLASTP

      Harris, B., Jacob, A. C., Lancaster, J. M., Buhler, J. & Chamberlain, R. D., 2007, Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL. p. 765-769 5 p. 4380764. (Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      30 Scopus citations

    • Application development on hybrid systems

      Chamberlain, R. D., Franklin, M. A., Tyson, E. J., Buhler, J., Gayen, S., Crowley, P. & Buckley, J. H., 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07. 50. (Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      9 Scopus citations

    • FPGA-accelerated seed generation in Mercury BLASTP

      Jacob, A., Lancaster, J., Buhler, J. & Chamberlain, R. D., 2007, Proceedings 2007 IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2017. IEEE Computer Society, p. 95-104 10 p. 4297247. (Proceedings 2007 IEEE Symposium on Field-Programme Custom Computing Machines, FCCM 2007).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      25 Scopus citations

    • Preliminary results in accelerating profile HMM search on FPGAs

      Jacob, A. C., Lancaster, J. M., Buhler, J. D. & Chamberlain, R. D., 2007, Proceedings - 21st International Parallel and Distributed Processing Symposium, IPDPS 2007; Abstracts and CD-ROM. 4228175. (Proceedings - 21st International Parallel and Distributed Processing Symposium, IPDPS 2007; Abstracts and CD-ROM).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      16 Scopus citations
    • 2006

      Accelerator design for protein sequence HMM search

      Maddimsetty, R. P., Buhler, J., Chamberlain, R. D., Franklin, M. A. & Harris, B., 2006, Proceedings of the 20th Annual International Conference on Supercomputing, ICS 2006. p. 288-296 9 p. (Proceedings of the International Conference on Supercomputing).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      34 Scopus citations

    • RNA secondary structure prediction via energy density minimization

      Alkan, C., Karakoc, E., Cenk Sahinalp, S., Unrau, P., Alexander Ebhardt, H., Zhang, K. & Buhler, J., 2006, Research in Computational Molecular Biology - 10th Annual International Conference, RECOMB 2006, Proceedings. p. 130-142 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3909 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      9 Scopus citations

    • Scalable softcore vector processor for biosequence applications

      Jacob, A. C., Harris, B., Buhler, J., Chamberlain, R. & Cho, Y. H., 2006, Proceedings - 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2006. p. 295-296 2 p. 4020927. (Proceedings - 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2006).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      4 Scopus citations
    • 2005

      Exploiting coarse-grained parallelism to accelerate protein motif finding with a network processor

      Wun, B., Buhler, J. & Crowley, P., 2005, 14th International Conference on Parallel Architectures and Compilation Techniques, PACT 2005. p. 173-184 12 p. 1515591. (Parallel Architectures and Compilation Techniques - Conference Proceedings, PACT; vol. 2005).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      24 Scopus citations
    • 2004

      Biosequence similarity search on the Mercury system

      Krishnamurthy, P., Buhler, J., Chamberlain, R., Franklin, M., Gyang, K. & Lancaster, J., 2004, Proceedings - 15th IEEE International Conference on Applications-Specific Systems, Architectures and Processors. p. 365-375 11 p. (Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      28 Scopus citations