Research output per year
Research output per year
- 100 - 150 out of 565 results
Search results
-
2013
Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
Reyes, A., Wu, M., McNulty, N. P., Rohwer, F. L. & Gordon, J. I., Dec 10 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 50, p. 20236-20241 6 p.Research output: Contribution to journal › Article › peer-review
Open Access253 Scopus citations -
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
Smith, M. I., Yatsunenko, T., Manary, M. J., Trehan, I., Mkakosya, R., Cheng, J., Kau, A. L., Rich, S. S., Concannon, P., Mychaleckyj, J. C., Liu, J., Houpt, E., Li, J. V., Holmes, E., Nicholson, J., Knights, D., Ursell, L. K., Knight, R. & Gordon, J. I., Feb 1 2013, In: Science. 339, 6119, p. 548-554 7 p.Research output: Contribution to journal › Article › peer-review
Open Access925 Scopus citations -
Gut microbiota from twins discordant for obesity modulate metabolism in mice
Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J., Duncan, A. E., Kau, A. L., Griffin, N. W., Lombard, V., Henrissat, B., Bain, J. R., Muehlbauer, M. J., Ilkayeva, O., Semenkovich, C. F., Funai, K., Hayashi, D. K., Lyle, B. J., Martini, M. C., Ursell, L. K., Clemente, J. C. & Van Treuren, W. & 5 others, , 2013, In: Science. 341, 6150, 1241214.Research output: Contribution to journal › Article › peer-review
Open Access2883 Scopus citations -
Meta-analyses of studies of the human microbiota
Lozupone, C. A., Stombaugh, J., Gonzalez, A., Ackermann, G., Wendel, D., Vázquez-Baeza, Y., Jansson, J. K., Gordon, J. I. & Knight, R., Oct 2013, In: Genome research. 23, 10, p. 1704-1714 11 p.Research output: Contribution to journal › Article › peer-review
Open Access314 Scopus citations -
Metabolic niche of a prominent sulfate-reducing human gut bacterium
Rey, F. E., Gonzalez, M. D., Cheng, J., Wu, M., Ahern, P. P. & Gordon, J. I., Aug 13 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 33, p. 13582-13587 6 p.Research output: Contribution to journal › Article › peer-review
Open Access301 Scopus citations -
Olfactory receptor responding to gut microbiotaderived signals plays a role in renin secretion and blood pressure regulation
Pluznick, J. L., Protzko, R. J., Gevorgyan, H., Peterlin, Z., Sipos, A., Han, J., Brunet, I., Wan, L. X., Rey, F., Wang, T., Firestein, S. J., Yanagisawa, M., Gordon, J. I., Eichmann, A., Peti-Peterdi, J. & Caplan, M. J., Mar 12 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 11, p. 4410-4415 6 p.Research output: Contribution to journal › Article › peer-review
Open Access910 Scopus citations -
Protein N-Myristoylation
Sonnenburg, E. D. & Gordon, J. I., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 641-644 4 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
Bokulich, N. A., Subramanian, S., Faith, J. J., Gevers, D., Gordon, J. I., Knight, R., Mills, D. A. & Caporaso, J. G., Jan 2013, In: Nature Methods. 10, 1, p. 57-59 3 p.Research output: Contribution to journal › Article › peer-review
3212 Scopus citations -
Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities
Kittelmann, S., Seedorf, H., Walters, W. A., Clemente, J. C., Knight, R., Gordon, J. I. & Janssen, P. H., Feb 8 2013, In: PloS one. 8, 2, e47879.Research output: Contribution to journal › Article › peer-review
Open Access290 Scopus citations -
Superorganisms and holobionts
Gordon, J., Knowlton, N., Relman, D. A., Rohwer, F. & Youle, M., Apr 2013, In: Microbe. 8, 4, p. 152-153 2 p.Research output: Contribution to journal › Comment/debate
71 Scopus citations -
The absence of a microbiota enhances TSLP expression in mice with defective skin barrier but does not affect the severity of their allergic inflammation
Yockey, L. J., Demehri, S., Turkoz, M., Turkoz, A., Ahern, P. P., Jassim, O., Manivasagam, S., Kearney, J. F., Gordon, J. I. & Kopan, R., Dec 2013, In: Journal of Investigative Dermatology. 133, 12, p. 2714-2721 8 p.Research output: Contribution to journal › Article › peer-review
Open Access28 Scopus citations -
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota
Kaoutari, A. E., Armougom, F., Gordon, J. I., Raoult, D. & Henrissat, B., Jul 2013, In: Nature Reviews Microbiology. 11, 7, p. 497-504 8 p.Research output: Contribution to journal › Article › peer-review
1200 Scopus citations -
The long-term stability of the human gut microbiota
Faith, J. J., Guruge, J. L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A. L., Clemente, J. C., Knight, R., Heath, A. C., Leibel, R. L., Rosenbaum, M. & Gordon, J. I., 2013, In: Science. 341, 6141, 1237439.Research output: Contribution to journal › Article › peer-review
1542 Scopus citations -
2012
Anthropology of microbes
Benezra, A., DeStefano, J. & Gordon, J. I., Apr 24 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 17, p. 6378-6381 4 p.Research output: Contribution to journal › Short survey › peer-review
Open Access76 Scopus citations -
Diversity, stability and resilience of the human gut microbiota
Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K. & Knight, R., Sep 13 2012, In: Nature. 489, 7415, p. 220-230 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access3863 Scopus citations -
Fatty acid synthase modulates intestinal barrier function through palmitoylation of mucin 2
Wei, X., Yang, Z., Rey, F. E., Ridaura, V. K., Davidson, N. O., Gordon, J. I. & Semenkovich, C. F., Feb 16 2012, In: Cell Host and Microbe. 11, 2, p. 140-152 13 p.Research output: Contribution to journal › Article › peer-review
Open Access138 Scopus citations -
Going viral: Next-generation sequencing applied to phage populations in the human gut
Reyes, A., Semenkovich, N. P., Whiteson, K., Rohwer, F. & Gordon, J. I., Sep 2012, In: Nature Reviews Microbiology. 10, 9, p. 607-617 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access348 Scopus citations -
Honor thy gut symbionts redux
Gordon, J. I., Jun 8 2012, In: Science. 336, 6086, p. 1251-1253 3 p.Research output: Contribution to journal › Review article › peer-review
Open Access156 Scopus citations -
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., Heath, A. C., Warner, B., Reeder, J., Kuczynski, J., Caporaso, J. G., Lozupone, C. A., Lauber, C., Clemente, J. C., Knights, D. & Knight, R. & 1 others, , Jun 14 2012, In: Nature. 486, 7402, p. 222-227 6 p.Research output: Contribution to journal › Review article › peer-review
Open Access5802 Scopus citations -
Identification of MW polyomavirus, a novel polyomavirus in human stool
Siebrasse, E. A., Reyes, A., Lim, E. S., Zhao, G., Mkakosya, R. S., Manary, M. J., Gordon, J. I. & Wang, D., Oct 2012, In: Journal of virology. 86, 19, p. 10321-10326 6 p.Research output: Contribution to journal › Article › peer-review
Open Access161 Scopus citations -
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
Lozupone, C., Faust, K., Raes, J., Faith, J. J., Frank, D. N., Zaneveld, J., Gordon, J. I. & Knight, R., Oct 2012, In: Genome research. 22, 10, p. 1974-1984 11 p.Research output: Contribution to journal › Article › peer-review
Open Access103 Scopus citations -
Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity
Henao-Mejia, J., Elinav, E., Jin, C., Hao, L., Mehal, W. Z., Strowig, T., Thaiss, C. A., Kau, A. L., Eisenbarth, S. C., Jurczak, M. J., Camporez, J. P., Shulman, G. I., Gordon, J. I., Hoffman, H. M. & Flavell, R. A., Feb 9 2012, In: Nature. 482, 7384, p. 179-185 7 p.Research output: Contribution to journal › Article › peer-review
Open Access1981 Scopus citations -
Quantitative assessment of the impact of the gut microbiota on lysine ε-acetylation of host proteins using gnotobiotic mice
Simon, G. M., Cheng, J. & Gordon, J. I., Jul 10 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 28, p. 11133-11138 6 p.Research output: Contribution to journal › Article › peer-review
Open Access43 Scopus citations -
The human gut microbiota and undernutrition
Gordon, J. I., Dewey, K. G., Mills, D. A. & Medzhitov, R. M., Jun 6 2012, In: Science translational medicine. 4, 137, 137ps12.Research output: Contribution to journal › Review article › peer-review
147 Scopus citations -
Unlocking the potential of metagenomics through replicated experimental design
Knight, R., Jansson, J., Field, D., Fierer, N., Desai, N., Fuhrman, J. A., Hugenholtz, P., Van Der Lelie, D., Meyer, F., Stevens, R., Bailey, M. J., Gordon, J. I., Kowalchuk, G. A. & Gilbert, J. A., Jun 2012, In: Nature Biotechnology. 30, 6, p. 513-520 8 p.Research output: Contribution to journal › Review article › peer-review
Open Access214 Scopus citations -
2011
A rendezvous with our microbes
Gordon, J. I. & Klaenhammer, T. R., Mar 15 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, SUPPL. 1, p. 4513-4515 3 p.Research output: Contribution to journal › Article › peer-review
Open Access44 Scopus citations -
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
Muegge, B. D., Kuczynski, J., Knights, D., Clemente, J. C., González, A., Fontana, L., Henrissat, B., Knight, R. & Gordon, J. I., May 20 2011, In: Science. 332, 6032, p. 970-974 5 p.Research output: Contribution to journal › Article › peer-review
Open Access1439 Scopus citations -
Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
Jumpertz, R., Le, D. S., Turnbaugh, P. J., Trinidad, C., Bogardus, C., Gordon, J. I. & Krakoff, J., Jul 1 2011, In: American Journal of Clinical Nutrition. 94, 1, p. 58-65 8 p.Research output: Contribution to journal › Article › peer-review
Open Access959 Scopus citations -
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
Goodman, A. L., Kallstrom, G., Faith, J. J., Reyes, A., Moore, A., Dantas, G. & Gordon, J. I., Apr 12 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 15, p. 6252-6257 6 p.Research output: Contribution to journal › Article › peer-review
571 Scopus citations -
Human nutrition, the gut microbiome and the immune system
Kau, A. L., Ahern, P. P., Griffin, N. W., Goodman, A. L. & Gordon, J. I., Jun 16 2011, In: Nature. 474, 7351, p. 327-336 10 p.Research output: Contribution to journal › Review article › peer-review
Open Access2095 Scopus citations -
Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries
Goodman, A. L., Wu, M. & Gordon, J. I., Dec 2011, In: Nature Protocols. 6, 12, p. 1969-1980 12 p.Research output: Contribution to journal › Article › peer-review
Open Access134 Scopus citations -
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., Gilbert, J. A., Karsch-Mizrachi, I., Johnston, A., Cochrane, G., Vaughan, R., Hunter, C., Park, J., Morrison, N., Rocca-Serra, P., Sterk, P., Arumugam, M., Bailey, M., Baumgartner, L. & Birren, B. W. & 78 others, , May 2011, In: Nature Biotechnology. 29, 5, p. 415-420 6 p.Research output: Contribution to journal › Review article › peer-review
Open Access542 Scopus citations -
Moving pictures of the human microbiome
Caporaso, J. G., Lauber, C. L., Costello, E. K., Berg-Lyons, D., Gonzalez, A., Stombaugh, J., Knights, D., Gajer, P., Ravel, J., Fierer, N., Gordon, J. I. & Knight, R., May 30 2011, In: Genome biology. 12, 5, R50.Research output: Contribution to journal › Article › peer-review
Open Access846 Scopus citations -
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
Elinav, E., Strowig, T., Kau, A. L., Henao-Mejia, J., Thaiss, C. A., Booth, C. J., Peaper, D. R., Bertin, J., Eisenbarth, S. C., Gordon, J. I. & Flavell, R. A., May 27 2011, In: Cell. 145, 5, p. 745-757 13 p.Research output: Contribution to journal › Article › peer-review
Open Access1652 Scopus citations -
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins
Hansen, E. E., Lozupone, C. A., Rey, F. E., Wu, M., Guruge, J. L., Narra, A., Goodfellow, J., Zaneveld, J. R., McDonald, D. T., Goodrich, J. A., Heath, A. C., Knight, R. & Gordon, J. I., Mar 15 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, SUPPL. 1, p. 4599-4606 8 p.Research output: Contribution to journal › Article › peer-review
Open Access183 Scopus citations -
Predicting a human gut microbiota's response to diet in gnotobiotic mice
Faith, J. J., McNulty, N. P., Rey, F. E. & Gordon, J. I., Jul 1 2011, In: Science. 333, 6038, p. 101-104 4 p.Research output: Contribution to journal › Article › peer-review
Open Access401 Scopus citations -
Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts
Martens, E. C., Lowe, E. C., Chiang, H., Pudlo, N. A., Wu, M., McNulty, N. P., Abbott, D. W., Henrissat, B., Gilbert, H. J., Bolam, D. N. & Gordon, J. I., Dec 2011, In: PLoS biology. 9, 12, e1001221.Research output: Contribution to journal › Article › peer-review
Open Access629 Scopus citations -
Sulfatases and a radical S-adenosyl-L-methionine (AdoMet) enzyme are key for mucosal foraging and fitness of the prominent human gut symbiont, Bacteroides thetaiotaomicron
Benjdia, A., Martens, E. C., Gordon, J. I. & Berteau, O., Jul 22 2011, In: Journal of Biological Chemistry. 286, 29, p. 25973-25982 10 p.Research output: Contribution to journal › Article › peer-review
Open Access122 Scopus citations -
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
McNulty, N. P., Yatsunenko, T., Hsiao, A., Faith, J. J., Muegge, B. D., Goodman, A. L., Henrissat, B., Oozeer, R., Cools-Portier, S., Gobert, G., Chervaux, C., Knights, D., Lozupone, C. A., Knight, R., Duncan, A. E., Bain, J. R., Muehlbauer, M. J., Newgard, C. B., Heath, A. C. & Gordon, J. I., Oct 26 2011, In: Science translational medicine. 3, 106, 106ra106.Research output: Contribution to journal › Article › peer-review
Open Access449 Scopus citations -
The mind-body-microbial continuum
Gonzalez, A., Stombaugh, J., Lozupone, C., Turnbaugh, P. J., Gordon, J. I. & Knight, R., 2011, In: Dialogues in Clinical Neuroscience. 13, 1, p. 55-62 8 p.Research output: Contribution to journal › Article › peer-review
107 Scopus citations -
2010
Creating and characterizing communities of human gut microbes in gnotobiotic mice
Faith, J. J., Rey, F. E., O'Donnell, D., Karlsson, M., McNulty, N. P., Kallstrom, G., Goodman, A. L. & Gordon, J. I., Sep 2010, In: ISME Journal. 4, 9, p. 1094-1098 5 p.Research output: Contribution to journal › Comment/debate
Open Access112 Scopus citations -
Direct sequencing of the human microbiome readily reveals community differences
Kuczynski, J., Costello, E. K., Nemergut, D. R., Zaneveld, J., Lauber, C. L., Knights, D., Koren, O., Fierer, N., Kelley, S. T., Ley, R. E., Gordon, J. I. & Knight, R., May 5 2010, In: Genome biology. 11, 5, 210.Research output: Contribution to journal › Review article › peer-review
Open Access132 Scopus citations -
Dissecting the in vivo metabolic potential of two human gut acetogens
Rey, F. E., Faith, J. J., Bain, J., Muehlbauer, M. J., Stevens, R. D., Newgard, C. B. & Gordon, J. I., Jul 16 2010, In: Journal of Biological Chemistry. 285, 29, p. 22082-22090 9 p.Research output: Contribution to journal › Article › peer-review
Open Access317 Scopus citations -
Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
Lauber, C. L., Zhou, N., Gordon, J. I., Knight, R. & Fierer, N., Jun 2010, In: FEMS Microbiology Letters. 307, 1, p. 80-86 7 p.Research output: Contribution to journal › Article › peer-review
Open Access332 Scopus citations -
Enterobacteriaceae Act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis
Garrett, W. S., Gallini, C. A., Yatsunenko, T., Michaud, M., Dubois, A., Delaney, M. L., Punit, S., Karlsson, M., Bry, L., Glickman, J. N., Gordon, J. I., Onderdonk, A. B. & Glimcher, L. H., Sep 16 2010, In: Cell Host and Microbe. 8, 3, p. 292-300 9 p.Research output: Contribution to journal › Article › peer-review
Open Access660 Scopus citations -
Homeostasis and Inflammation in the Intestine
Garrett, W. S., Gordon, J. I. & Glimcher, L. H., Mar 2010, In: Cell. 140, 6, p. 859-870 12 p.Research output: Contribution to journal › Review article › peer-review
Open Access641 Scopus citations -
Matrix metalloproteinases contribute distinct roles in neuroendocrine prostate carcinogenesis, metastasis, and angiogenesis progression
Littlepage, L. E., Sternlicht, M. D., Rougier, N., Phillips, J., Gallo, E., Yu, Y., Williams, K., Brenot, A., Gordon, J. I. & Werb, Z., Mar 15 2010, In: Cancer research. 70, 6, p. 2224-2234 11 p.Research output: Contribution to journal › Article › peer-review
Open Access180 Scopus citations -
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
Turnbaugh, P. J., Quince, C., Faith, J. J., McHardy, A. C., Yatsunenko, T., Niazi, F., Affourtit, J., Egholm, M., Henrissat, B., Knight, R. & Gordon, J. I., Apr 20 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 16, p. 7503-7508 6 p.Research output: Contribution to journal › Article › peer-review
382 Scopus citations -
Our unindicted coconspirators: Human metabolism from a microbial perspective
Goodman, A. L. & Gordon, J. I., Aug 4 2010, In: Cell metabolism. 12, 2, p. 111-116 6 p.Research output: Contribution to journal › Review article › peer-review
Open Access61 Scopus citations -
Postprandial remodeling of the gut microbiota in Burmese pythons
Costello, E. K., Gordon, J. I., Secor, S. M. & Knight, R., Nov 2010, In: ISME Journal. 4, 11, p. 1375-1385 11 p.Research output: Contribution to journal › Article › peer-review
Open Access219 Scopus citations