Personal profile
Research interests
Dr. Dantas’s research interests and training lie at the interface of microbial genomics, synthetic biology, systems biology, and computational biology. His current research focuses on understanding (1) the evolution and exchange of antibiotic resistance amongst diverse microbial communities, (2) on engineering improved probiotics to treat gastrointestinal disorders, and (3) on engineering microbial catalysts to produce value chemicals such as biofuels.
Mentoring
I lead an interdisciplinary research and training group of basic scientists, engineers, and clinicians, spanning formal expertise in microbiology, biochemistry, genomics, pathology, infectious diseases, pediatrics, ecology and evolution, systems biology, biomedical engineering, chemical engineering, and computational biology. In addition to my research efforts, I am deeply committed to education, mentoring, and training. I am the co-Chief of Research for the Division of Laboratory and Genomic Medicine. I am also the co-Director of the Computational & Systems Biology (CSB) graduate program, have served on the steering committee for both the CSB and Molecular Microbiology & Microbial Pathogenesis graduate programs, regularly teach in 3 graduate-level courses, and have served on over 100 qualifying exam and thesis committees. In November 2019, I participated in the “Maximizing Research Mentoring Relationships Workshop” led by an NRMN-trained facilitator, and I will continue to regularly participate in formal mentor training. Over the past 13 years, I have mentored 17 postdoctoral fellows (12 PhD, 4 MD/PhD, 1 MD), 33 graduate students (including 2 MSTP), 2 medical students, 9 research technicians, and over 100 undergraduate interns. I have graduated 17 PhD, 1 MD/PhD, and 1 MSc students; three are independent faculty, six are in post-doctoral training, one is a K-12 teacher, and eight work in biotech. Six of my postdoctoral mentees have earned faculty positions, and four work in the biotech industry. I am committed to providing a nurturing, well-supported, and actively mentored environment for my team to collaboratively tackle basic science and translational research problems.
Available to Mentor:
- PhD Students
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Collaborations and top research areas from the last five years
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A Novel Focal Duodenal Radiation Injury Model Reveals Dose-, Time-, and Spatially Dependent Microbiome Perturbations After Radiation Injury
Habimana-Griffin, L. M., Prusa, J., Wang, B., Strong, L., Ning, J., Tovar, E. S. R., Toth, K., Butler, B., Reynoso, F. J., Markovina, S., Ciorba, M. A. & Dantas, G., Jun 1 2026, In: International Journal of Radiation Oncology Biology Physics. 125, 2, p. 590-602 13 p.Research output: Contribution to journal › Article › peer-review
Open Access -
A randomized controlled trial to unveil the influence of an exercise intervention on brain integrity and gut microbiome structure in individuals with HIV
Cooley, S. A., Ferreiro, A., Nelson, B., Sukhum, K., Westerhaus, E., Petersen, K., Fox, J. R., Rosenow, A., Sorensen, C., Vaida, F., Reeds, D. N., Tarr, P. I., Dantas, G. & Ances, B. M., 2026, In: AIDS. Publish Ahead of PrintResearch output: Contribution to journal › Article › peer-review
2 Link opens in a new tab Scopus citations -
Community-associated quinolone-resistant and extended-spectrum beta-lactamase-producing Escherichia coli isolates are similar to clinical infection isolates by sequence type and resistome
Benedict, E. E., Agee, W., Hink, T., Parrish, K. L., Reske, K. A., Peacock, K., Bosserman, R. E., Valencia, A., Saluja, A., Ovchiyan, E., Arter, O., Jolani, K., Dubberke, E. R., Dantas, G. & Kwon, J. H., Feb 17 2026, In: mSystems. 11, 2, p. 1-16 16 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Relationship Between Clostridioides difficile Stool Concentration, Nucleic Acid Amplification Test Results, and Environmental Contamination
Lee, M. M., Reske, K. A., Hink, T., Fishbein, S. R. S., Newcomer, E. P., Cass, C., Olsen, M. A., Dantas, G., Burnham, C. A. D. & Dubberke, E. R., Apr 2026, In: Open Forum Infectious Diseases. 13, 4Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations -
A yeast-based oral therapeutic delivers immune checkpoint inhibitors to reduce intestinal tumor burden
Rebeck, O. N., Wallace, M. J., Prusa, J., Ning, J., Evbuomwan, E. M., Rengarajan, S., Habimana-Griffin, L. M., Kwak, S., Zahrah, D., Tung, J., Liao, J., Mahmud, B., Fishbein, S. R. S., Ramirez Tovar, E. S., Mehta, R., Wang, B., Gorelik, M. G., Helmink, B. A. & Dantas, G., Jan 16 2025, In: Cell Chemical Biology. 32, 1, p. 98-110.e7Research output: Contribution to journal › Article › peer-review
Open Access29 Link opens in a new tab Scopus citations