Personal profile
Research interests
Our research focuses integrative cancer biology research for the purpose of translating genome-based knowledge into novel diagnostic, prognostic, therapeutic strategies in cancer research. In order to accomplish this, we have focused on the development of novel computational tools to integrate and interpret high-throughput genomic data collections to better understand cancer biology. For example, we have successfully developed tools for identifying clinical relevant gene fusions and novel long intergenic non-coding RNAs in prostate cancer. Building upon this work, we are actively integrating novel solid tumor genomics data collections to identify altered mutations and pathways, explore these alterations using in vitro and in vivo models, and ultimately work with clinicians to translate these findings into the clinic.
Available to Mentor:
- PhD Students
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Collaborations and top research areas from the last five years
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Integration of Short- and Long-Read RNA Sequencing Enables the Discovery of Circular RNAs
Swift, S. Z., Webster, J., Mai, H., Othoum, G., Lin, L., Ly, A., Rozycki, E. B., Mudd, J. L., Coonrod, E., Agarwal, A., Fields, R. & Maher, C. A., Mar 2 2026, In: Cancer research. 86, 5, p. 1300-1318 19 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Genomic and Epigenomic Analysis of Plasma Cell-Free DNA Identifies Stemness Features Associated with Worse Survival in Lethal Prostate Cancer
Chauhan, P. S., Alahi, I., Sinha, S., Ledet, E. M., Mueller, R., Linford, J., Shiang, A. L., Webster, J., Greiner, L., Yang, B., Ni, G., Dang, H. X., Saha, D., Babbra, R. K., Feng, W., Harris, P. K., Qaium, F., Duose, D. Y., Alexander, S. E. & Sherry, A. D. & 11 others, , Jan 1 2025, In: Clinical Cancer Research. 31, 1, p. 151-163 13 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Link opens in a new tab Scopus citations -
Leveraging sequences missing from the human genome to diagnose cancer
Georgakopoulos-Soares, I., Yizhar-Barnea, O., Mouratidis, I., Chan, C. S. Y., Patsakis, M., Nayak, A., Bradley, R., Mahajan, M., Sims, J., Cintron, D. L., Easterlin, R., Kim, J. S., Chen, E., Pineda, G., Parada, G. E., Witte, J. S., Maher, C. A., Feng, F., Vathiotis, I. & Syrigos, N. & 7 others, , Dec 2025, In: Communications Medicine. 5, 1, 363.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations -
Methylation-based signature to distinguish indolent and aggressive prostate cancer
Liao, M., Webster, J., Ly, A., Rozycki, E. & Maher, C. A., Dec 2025, In: Biology Open. 14, 12, bio062281.Research output: Contribution to journal › Article › peer-review
Open Access -
BCAR4 Expression as a Predictive Biomarker for Endocrine Therapy Resistance in Breast Cancer
Liao, M., Webster, J., Coonrod, E. M., Weilbaecher, K. N., Maher, C. A. & White, N. M., Jun 2024, In: Clinical breast cancer. 24, 4, p. 368-375.e2Research output: Contribution to journal › Article › peer-review
Open Access4 Link opens in a new tab Scopus citations