Washington University School of Medicine

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  • 2012

    Exploring semi-supervised coreference resolution of medical concepts using semantic and temporal features

    Raghavan, P., Fosler-Lussier, E. & Lai, A. M., 2012, Proceedings of the 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies. Association for Computational Linguistics (ACL), p. 731-741 11 p. (NAACL HLT 2012 - 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Feedback thermal control of real-time systems on multicore processors

    Fu, Y., Kottenstette, N., Lu, C. & Koutsoukos, X. D., 2012, EMSOFT'12 - Proceedings of the 10th ACM International Conference on Embedded Software 2012, Co-located with ESWEEK. p. 113-122 10 p. (EMSOFT'12 - Proceedings of the 10th ACM International Conference on Embedded Software 2012, Co-located with ESWEEK).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    45 Scopus citations

  • Fiber taper based Raman spectroscopic sensing

    Edwards, P. S., Janisch, C. T., He, L., Zhu, J., Yang, L. & Liu, Z., 2012, 2012 IEEE Photonics Conference, IPC 2012. p. 501-502 2 p. 6358712. (2012 IEEE Photonics Conference, IPC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Finite element modeling of matrix synthesis and binding kinetics in a biphasic-solute material

    Ateshian, G. A., Nims, R., Cigan, A. D., Albro, M. B. & Hung, C. T., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1019-1020 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Flood incident management for water sensitive urban design

    Dawson, R. J., Wang, M. & Buhler, J., 2012, WSUD 2012 - 7th International Conference on Water Sensitive Urban Design: Building the Water Sensitive Community, Final Program and Abstract Book. (WSUD 2012 - 7th International Conference on Water Sensitive Urban Design: Building the Water Sensitive Community, Final Program and Abstract Book).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Fluorescence goggle for intraoperative breast cancer imaging

    Liu, Y., Bauer, A. Q., Akers, W., Sudlow, G., Liang, K., Charanya, T., Mondal, S., Culver, J. P. & Achilefu, S., 2012, Design and Quality for Biomedical Technologies V. 82150G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8215).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Fluorescence goggle system for surgical navigation

    Liu, Y., Akers, W., Bauer, A. Q., Sudlow, G., Liang, K., Culver, J. P. & Achilefu, S., 2012, Biomedical Optics, BIOMED 2012. Optical Society of America (OSA), p. BW1B.2 (Biomedical Optics, BIOMED 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • From data to constraints

    Mukhopadhyay, S., Parzen, E. & Lahiri, S. N., 2012, Bayesian Inference and Maximum Entropy Methods in Science and Engineering - 31st International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, MaxEnt 2011. p. 32-39 8 p. (AIP Conference Proceedings; vol. 1443).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Functional connectivity mapping in hospitalized infants using diffuse optical tomography

    Ferradal, S. L., Liao, S. M., Eggebrecht, A. T., Inder, T. E. & Culver, J. P., 2012, Biomedical Optics, BIOMED 2012. Optical Society of America (OSA), p. BSu4A.7 (Biomedical Optics, BIOMED 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Generalized dynamic PET inter-frame and intra-frame motion correction - Phantom and human validation studies

    Mohy-Ud-Din, H., Karakatsanis, N. A., Goddard, J. S., Baba, J., Wills, W., Tahari, A. K., Wong, D. F. & Rahmim, A., 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2012. p. 3067-3078 12 p. 6551701. (IEEE Nuclear Science Symposium Conference Record).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • Generalized total variation denoising via augmented Lagrangian cycle spinning with Haar wavelets

    Kamilov, U., Bostan, E. & Unser, M., 2012, 2012 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2012 - Proceedings. p. 909-912 4 p. 6288032. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • Genome-wide meta-regression of gene-environment interaction

    Xu, X., Shi, G. & Nehorai, A., 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 62-65 4 p. 6507727. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Hierarchical particle filtering for target tracking in multi-modal sensor networks

    Chavali, P. & Nehorai, A., 2012, 2012 IEEE 7th Sensor Array and Multichannel Signal Processing Workshop, SAM 2012. p. 149-152 4 p. 6250452. (Proceedings of the IEEE Sensor Array and Multichannel Signal Processing Workshop).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Hot atom chemistry and radiopharmaceuticals

    Krohn, K. A., Moerlein, S. M., Link, J. M. & Welch, M. J., 2012, 14th International Workshop on Targetry and Target Chemistry. p. 3-15 13 p. (AIP Conference Proceedings; vol. 1509).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Hybrid photonic molecules

    Peng, B., Ozdemir, S. K., Zhu, J. & Yang, L., 2012, Quantum Electronics and Laser Science Conference, QELS 2012. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Hybrid photonic molecules

    Peng, B., Ozdemir, S. K., Zhu, J. & Yang, L., 2012, 2012 Conference on Lasers and Electro-Optics, CLEO 2012. 6326723. (2012 Conference on Lasers and Electro-Optics, CLEO 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Hybrid photonic molecules

    Peng, B., Ozdemir, S. K., Zhu, J. & Yang, L., 2012, CLEO: Applications and Technology, CLEO_AT 2012. Optical Society of America (OSA), p. JW4A.93 (CLEO: Applications and Technology, CLEO_AT 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Identification of a transversely isotropic material model for white matter in the brain

    Feng, Y., Okamoto, R. J., Namani, R., Genin, G. M. & Bayly, P. V., 2012, Biomedical and Biotechnology. American Society of Mechanical Engineers (ASME), p. 787-794 8 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE); vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Implementation and evaluation of mixed-criticality scheduling approaches for periodic tasks

    Huang, H. M., Gill, C. & Lu, C., 2012, Proceedings - 18th IEEE Real Time and Embedded Technology and Applications Symposium, RTAS 2012. p. 23-32 10 p. 6200075. (Real-Time Technology and Applications - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    28 Scopus citations

  • Injectable and photocrosslinkable laminin functionalized biomaterials for intervertebral disc regeneration

    Francisco, A. T., Mancino, R. J., Jeong, C. G., Karikari, I. O., Bowles, R. D., Craig, S. L. & Setton, L. A., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1145-1146 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Insulin and ascorbate have a much greater influence than transferrin and selenous acid on the growth of engineered cartilage in chondrogenic media

    Cigan, A. D., Nims, R. J., Albro, M. B., Breves, S. L., Hung, C. T. & Ateshian, G. A., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1141-1142 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Integration of a computational lab sequence into a junior-level quantitative physiology course

    Thoroughman, K. A., Khan, R. P., Sun, H. & Widder, P. L., 2012, 119th ASEE Annual Conference and Exposition. American Society for Engineering Education, (ASEE Annual Conference and Exposition, Conference Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Interfacial phases on giant unilamellar vesicles

    Jiang, Y., Genin, G. M., Singamaneni, S. & Elson, E. L., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 705-706 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Investigations of the optical properties of ZnO-metal oxide core-shell nanowire arrays for use in advanced optoelectronics

    Thomas, M. A. & Cui, J., 2012, Program - 38th IEEE Photovoltaic Specialists Conference, PVSC 2012. p. 1931-1936 6 p. 6317972. (Conference Record of the IEEE Photovoltaic Specialists Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • IPSIHAND BRAVO: An improved EEG-based brain-computer interface for hand motor control rehabilitation

    Holmes, C. D., Wronkiewicz, M., Somers, T., Liu, J., Russell, E., Kim, D., Rhoades, C., Dunkley, J., Bundy, D., Galboa, E. & Leuthardt, E., 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 1749-1752 4 p. 6346287. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Iterative sparse through-the-wall imaging

    Nikolic, M., Nehorai, A. & Djordjevic, A., 2012, 2012 IEEE 7th Sensor Array and Multichannel Signal Processing Workshop, SAM 2012. p. 345-348 4 p. 6250507. (Proceedings of the IEEE Sensor Array and Multichannel Signal Processing Workshop).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Learning to temporally order medical events in clinical text

    Raghavan, P., Fosler-Lussier, E. & Lai, A. M., 2012, 50th Annual Meeting of the Association for Computational Linguistics, ACL 2012 - Proceedings of the Conference. p. 70-74 5 p. (50th Annual Meeting of the Association for Computational Linguistics, ACL 2012 - Proceedings of the Conference; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Light field compression using homography and 2D warping

    Kundu, S., 2012, 2012 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2012 - Proceedings. p. 1349-1352 4 p. 6288140. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    22 Scopus citations

  • Magnetic resonance elastography of the mouse vitreous humor in vivo

    Clayton, E. H., Wang, Q., Song, S. K., Okamoto, R. J. & Bayly, P. V., 2012, Applications of Imaging Techniques to Mechanics of Materials and Structures - Proceedings of the 2010 Annual Conference on Experimental and Appied Mechanics. p. 129-133 5 p. (Conference Proceedings of the Society for Experimental Mechanics Series; vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Matriptase sensitive gold nanoparticle probe for early cancer detection

    Zhang, D., Xue, J., Tian, J., Jin, J., Cao, J., Cui, S., Achilefu, S. & Gu, Y., 2012, Optical, Electronic Materials and Applications II. p. 301-305 5 p. (Advanced Materials Research; vol. 529).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Measurement of brain biomechanics in vivo by magnetic resonance imaging

    Bayly, P. V., Clayton, E. H., Feng, Y., Abney, T., Namani, R., Okamoto, R. J. & Genin, G. M., 2012, Applications of Imaging Techniques to Mechanics of Materials and Structures - Proceedings of the 2010 Annual Conference on Experimental and Appied Mechanics. p. 117-128 12 p. (Conference Proceedings of the Society for Experimental Mechanics Series; vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Mechanisms for microvascular damage induced by ultrasound-activated microbubbles

    Chen, H., Brayman, A. A., Evan, A. P. & Matula, T. J., 2012, 11th International Symposium on Therapeutic Ultrasound. p. 41-46 6 p. (AIP Conference Proceedings; vol. 1481).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Medical event coreference resolution using the UMLS metathesaurus and temporal reasoning

    Raghavan, P., Brew, C., Fosler-Lussier, E. & Lai, A. M., 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 465-472 8 p. (IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Message from general co-chairs and program chair

    Lee, I., Sokolsky, O. & Lu, C., 2012, Proceedings - 2012 IEEE/ACM 3rd International Conference on Cyber-Physical Systems, ICCPS 2012. IEEE Computer Society, p. 10 1 p. 6197439. (Proceedings - 2012 IEEE/ACM 3rd International Conference on Cyber-Physical Systems, ICCPS 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • MMSE denoising of sparse Lévy processes via message passing

    Kamilov, U., Amini, A. & Unser, M., 2012, 2012 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2012 - Proceedings. p. 3637-3640 4 p. 6288704. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations

  • Mode splitting based single particle size measurement in water

    Kim, W., Ozdemir, S. K., Zhu, J. & Yang, L., 2012, CLEO: Science and Innovations, CLEO_SI 2012. Optical Society of America (OSA), p. CTu2L.1 (CLEO: Science and Innovations, CLEO_SI 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mode splitting based single particle size measurement in water

    Kim, W., Ozdemir, S. K., Zhu, J. & Yang, L., 2012, 2012 Conference on Lasers and Electro-Optics, CLEO 2012. 6326072. (2012 Conference on Lasers and Electro-Optics, CLEO 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Multi-contrast photoacoustic microscopy

    Hu, S., Sohn, R., Lu, Z. H., Soetikno, B., Zhong, Q., Yao, J., Maslov, K., Arbeit, J. M. & Wang, L. V., Mar 15 2012, Photons Plus Ultrasound: Imaging and Sensing 2012. SPIE, 822310. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8223).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Multi-modal in cellulo evaluation of NPR-C targeted C-ANF-peptide and C-ANF-comb nanoparticles

    Shokeen, M., Pressly, E., Connal, L., Liu, Y., Hawker, C. J., Woodard, P. K., Anderson, C. J., Achilefu, S. & Welch, M. J., 2012, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications IV. 82330U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8233).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Multimodal video-rate fluorescence DOT and SPECT/CT for small animals

    Solomon, M., Nothdruft, R. E., Akers, W., Barry Edwards, W., Liang, K., Xu, B., Deghani, H., Tai, Y. C., Achilefu, S. & Culver, J. P., 2012, Biomedical Optics, BIOMED 2012. Optical Society of America (OSA), p. BM2A.6 (Biomedical Optics, BIOMED 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Near optimal rate selection for wireless control systems

    Saifullah, A., Wu, C., Tiwari, P. B., Xu, Y., Fu, Y., Lu, C. & Chen, Y., 2012, Proceedings - 18th IEEE Real Time and Embedded Technology and Applications Symposium, RTAS 2012. p. 231-240 10 p. 6200054. (Real-Time Technology and Applications - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    23 Scopus citations

  • Negative correlation of wall thickness with wall blood pressure in a patient-specific atherosclerotic coronary artery: A case report

    Liu, B., Zheng, J., Bach, R. & Tang, D., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 907-908 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data

    Ruan, J., Jahid, M. J., Gu, F., Lei, C., Huang, Y. W., Hsu, Y. T., Mutch, D. G., Chen, C. L., Kirma, N. B. & Huang, T. H., 2012, 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012. p. 418-425 8 p. (2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Noise-exploitation and adaptation in neuromorphic sensors

    Hindo, T. & Chakrabartty, S., 2012, Bioinspiration, Biomimetics, and Bioreplication 2012. 833905. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8339).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Noise suppression in surface microseismic data by τ − p transform

    Forghani-Arani, F., Willis, M., Haines, S., Batzle, M., Behura, J. & Davidson, M., 2012, Society of Exploration Geophysicists International Exposition and 82nd Annual Meeting 2012, SEG 2012. Society of Exploration Geophysicists, p. 3826-3830 5 p. (Society of Exploration Geophysicists International Exposition and 82nd Annual Meeting 2012, SEG 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Novel microsphere chain fiber tips for use in mid-infrared ophthalmic laser surgery

    Hutchens, T. C., Darafsheh, A., Fardad, A., Antoszyk, A. N., Ying, H. S., Astratov, V. N. & Fried, N. M., 2012, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XII. 821803. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8218).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Novel parametric PET image quantification using texture and shape analysis

    Rahmim, A., Coughlin, J., Gonzalez, M., Endres, C. J., Zhou, Y., Wong, D. F., Wahl, R. L., Sossi, V. & Pomper, M. G., 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2012. p. 2227-2230 4 p. 6551507. (IEEE Nuclear Science Symposium Conference Record).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Onboard cone beam CT with flexible image trajectories to improve image quality and longitudinal coverage - Simulation and phantom study

    Yang, D., Tan, J., Li, H., Goddu, S. M. & Li, H., 2012, Medical Imaging 2012: Physics of Medical Imaging. 83132Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8313).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • On-chip whispering-gallery-mode lasers for sensing applications

    He, L., Ozdemir, S. K., Zhu, J., Kim, W. & Yang, L., 2012, Laser Resonators, Microresonators, and Beam Control XIV. 82361B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8236).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Optical intrinsic signal imaging of functional connectivity in the mouse brain

    Bauer, A. Q., White, B. R., Snyder, A. Z., Schlaggar, B. L., Lee, J. M. & Culver, J. P., 2012, Biomedical Optics, BIOMED 2012. Optical Society of America (OSA), p. BM4A.7 (Biomedical Optics, BIOMED 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review