Section of Stem Cell Biology

2024

A phase II study of interrupted and continuous dose lenalidomide in relapsed/refractory Hodgkin lymphoma

Fehniger, T. A., Watkins, M. P., Ezenwajiaku, N., Wan, F., Hurd, D. D., Cashen, A. F., Blum, K. A., Goy, A., Fenske, T. S., Wagner-Johnston, N. D., Carson, K., Siegel, M. J., Russler-Germain, D., Schneider, S. E., Mehta-Shah, N., Kahl, B. & Bartlett, N. L., Mar 2024, In: Haematologica. 109, 3, p. 953-957 5 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

A Phase I Study of Romidepsin in Combination With Gemcitabine, Oxaliplatin, and Dexamethasone in Patients With Relapsed or Refractory Aggressive Lymphomas Enriched for T-Cell Lymphomas

Foley, N., Riedell, P. A., Bartlett, N. L., Cashen, A. F., Kahl, B. S., Fehniger, T. A., Fischer, A., Moreno, C., Liu, J., Carson, K. & Mehta-Shah, N., 2024, (Accepted/In press) In: Clinical Lymphoma, Myeloma and Leukemia.

Research output: Contribution to journal › Article › peer-review

A “Prime and Expand” strategy using the multifunctional fusion proteins to generate memory-like NK cells for cell therapy

Shrestha, N., Dee, M. J., Chaturvedi, P., Leclerc, G. M., Mathyer, M., Dufour, C., Arthur, L., Becker-Hapak, M., Foster, M., McClain, E., Pena, N. V., Kage, K., Zhu, X., George, V., Liu, B., Egan, J., Echeverri, C., Wang, M., You, L. & Kong, L. & 6 others, Li, L., Berrien-Elliott, M. M., Cooper, M. L., Fehniger, T. A., Rhode, P. R. & Wong, H. C., Sep 2024, In: Cancer Immunology, Immunotherapy. 73, 9, 179.

Research output: Contribution to journal › Article › peer-review

Open Access

Blinatumomab consolidation post–autologous stem cell transplantation in patients with diffuse large B-cell lymphoma

Ghobadi, A., Foley, N. C., Cohen, J., Rettig, M. P., Cashen, A. F., Gehrs, L., Christ, S., Street, E., Wallace, N., Ritchey, J., Mehta-Shah, N., Westervelt, P., Fehniger, T. A., Kahl, B., Bartlett, N. L. & DiPersio, J. F., Feb 13 2024, In: Blood Advances. 8, 3, p. 513-522 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Cytokines drive the formation of memory-like NK cell subsets via epigenetic rewiring and transcriptional regulation

Foltz, J. A., Tran, J., Wong, P., Fan, C., Schmidt, E., Fisk, B., Becker-Hapak, M., Russler-Germain, D. A., Johnson, J., Marin, N. D., Cubitt, C. C., Pence, P., Rueve, J., Pureti, S., Hwang, K., Gao, F., Zhou, A. Y., Foster, M., Schappe, T. & Marsala, L. & 9 others, Berrien-Elliott, M. M., Cashen, A. F., Bednarski, J. J., Fertig, E., Griffith, O. L., Griffith, M., Wang, T., Petti, A. A. & Fehniger, T. A., Jun 28 2024, In: Science immunology. 9, 96, eadk4893.

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Engineering human pluripotent stem cell lines to evade xenogeneic transplantation barriers

Pizzato, H. A., Alonso-Guallart, P., Woods, J., Connelly, J. P., Fehniger, T. A., Atkinson, J. P., Pruett-Miller, S. M., Monsma, F. J. & Bhattacharya, D., Feb 13 2024, In: Stem Cell Reports. 19, 2, p. 299-313 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

Erratum: Engineering human pluripotent stem cell lines to evade xenogeneic transplantation barriers (Stem Cell Reports (2024) 19(2) (299–313), (S2213671123004964), (10.1016/j.stemcr.2023.12.003))

Pizzato, H. A., Alonso-Guallart, P., Woods, J., Johannesson, B., Connelly, J. P., Fehniger, T. A., Atkinson, J., Pruett-Miller, S. M., Monsma, F. J. & Bhattacharya, D., Apr 9 2024, In: Stem Cell Reports. 19, 4, p. 596 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

Fat matters for natural killer cell activity

Wong, P. & Fehniger, T. A., May 2024, In: Nature immunology. 25, 5, p. 728-730 3 p.

Research output: Contribution to journal › Comment/debate

Induced CD8α identifies human NK cells with enhanced proliferative fitness and modulates NK cell activation

Cubitt, C. C., Wong, P., Dorando, H. K., Foltz, J. A., Tran, J., Marsala, L., Marin, N. D., Foster, M., Schappe, T., Fatima, H., Becker-Hapak, M., Zhou, A. Y., Hwang, K., Jacobs, M. T., Russler-Germain, D. A., Mace, E. M., Berrien-Elliott, M. M., Payton, J. E. & Fehniger, T. A., 2024, In: Journal of Clinical Investigation. 134, 15, e173602.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Memory-like differentiation enhances NK cell responses against colorectal cancer

Marin, N. D., Becker-Hapak, M., Song, W. M., Alayo, Q. A., Marsala, L., Sonnek, N., Berrien-Elliott, M. M., Foster, M., Foltz, J. A., Tran, J., Wong, P., Cubitt, C. C., Pence, P., Hwang, K., Zhou, A. Y., Jacobs, M. T., Schappe, T., Russler-Germain, D. A., Fields, R. C. & Ciorba, M. A. & 1 others, Fehniger, T. A., 2024, In: OncoImmunology. 13, 1, 2348254.

Research output: Contribution to journal › Article › peer-review

Open Access

Molecular responses in decitabine-and decitabine/venetoclax-Treated patients with acute myeloid leukemia and myelodysplastic syndromes

Gruszczynska, A., Maiti, A., Miller, C. A., Ramakrishnan, S. M., Link, D. C., Uy, G. L., Petti, A. A., Hayes, K., Nardo, C. D. D., Ravandi, F., Ley, T. J., Spencer, D. H., Gao, F., Konopleva, M. Y. & Welch, J. S., 2024, In: Haematologica.

Research output: Contribution to journal › Letter › peer-review

Open Access

1 Scopus citations

Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma

Ramirez, C. A., Becker-Hapak, M., Singhal, K., Russler-Germain, D. A., Frenkel, F., Barnell, E. K., McClain, E. D., Desai, S., Schappe, T., Onyeador, O. C., Kudryashova, O., Belousov, V., Bagaev, A., Ocheredko, E., Kiwala, S., Hundal, J., Skidmore, Z. L., Watkins, M. P., Mooney, T. B. & Walker, J. R. & 13 others, Krysiak, K., Gomez, F., Fronick, C. C., Fulton, R. S., Schreiber, R. D., Mehta-Shah, N., Cashen, A. F., Kahl, B. S., Ataullakhanov, R., Bartlett, N. L., Griffith, M., Griffith, O. L. & Fehniger, T. A., Aug 13 2024, In: Blood Advances. 8, 15, p. 4035-4049 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Nuclear EGFR in breast cancer suppresses NK cell recruitment and cytotoxicity

Escoto, A., Hecksel, R., Parkinson, C., Crane, S., Atwell, B., King, S., Ortiz Chavez, D., Jannuzi, A., Sands, B., Bitler, B. G., Fehniger, T. A., Paek, A. L., Padi, M. & Schroeder, J., 2024, (Accepted/In press) In: Oncogene.

Research output: Contribution to journal › Article › peer-review

Open Access

Pangenome graph construction from genome alignments with Minigraph-Cactus

Human Pangenome Reference Consortium, Apr 2024, In: Nature Biotechnology. 42, 4, p. 663-673 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

60 Scopus citations

PML::RARA and GATA2 proteins interact via DNA templates to induce aberrant self-renewal in mouse and human hematopoietic cells

Katerndahl, C. D. S., Rogers, O. R. S., Day, R. B., Xu, Z., Helton, N. M., Ramakrishnan, S. M., Miller, C. A. & Ley, T. J., Apr 30 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 18, e2317690121.

Research output: Contribution to journal › Article › peer-review

Open Access

Proteogenomic analysis reveals cytoplasmic sequestration of RUNX1 by the acute myeloid leukemia–initiating CBFB::MYH11 oncofusion protein

Day, R. B., Hickman, J. A., Xu, Z., Katerndahl, C. D. S., Ferraro, F., Ramakrishnan, S. M., Erdmann-Gilmore, P., Sprung, R. W., Mi, Y., Townsend, R. R., Miller, C. A. & Ley, T. J., Feb 15 2024, In: Journal of Clinical Investigation. 134, 4, 1e176311.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Rapid and accurate remethylation of DNA in Dnmt3a-deficient hematopoietic cells with restoration of DNMT3A activity

Li, Y., Abel, H. J., Cai, M., LaValle, T. A., Yin, T., Helton, N. M., Smith, A. M., Miller, C. A. & Ley, T. J., Feb 2024, In: Science Advances. 10, 5, eadk8598.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Stabilizing the Proteomes of Acute Myeloid Leukemia Cells: Implications for Cancer Proteomics

Sprung, R. W., Zhang, Q., Kramer, M. H., Christopher, M. C., Erdmann-Gilmore, P., Mi, Y., Malone, J. P., Ley, T. J. & Townsend, R. R., Feb 2024, In: Molecular and Cellular Proteomics. 23, 2, 100716.

Research output: Contribution to journal › Article › peer-review

Open Access

“Off the Shelf” CAR-T/NK Cells

Marin, N. D., Zhou, A., Jacobs, M. T. & Fehniger, T. A., Jan 1 2024, Precision Cancer Therapies: Volume 2: Immunologic Approaches for the Treatment of Lymphoid Malignancies: From Concept to Practice. wiley, p. 341-359 19 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

1 Scopus citations

2023

A draft human pangenome reference

Liao, W. W., Asri, M., Ebler, J., Doerr, D., Haukness, M., Hickey, G., Lu, S., Lucas, J. K., Monlong, J., Abel, H. J., Buonaiuto, S., Chang, X. H., Cheng, H., Chu, J., Colonna, V., Eizenga, J. M., Feng, X., Fischer, C., Fulton, R. S. & Garg, S. & 99 others, Groza, C., Guarracino, A., Harvey, W. T., Heumos, S., Howe, K., Jain, M., Lu, T. Y., Markello, C., Martin, F. J., Mitchell, M. W., Munson, K. M., Mwaniki, M. N., Novak, A. M., Olsen, H. E., Pesout, T., Porubsky, D., Prins, P., Sibbesen, J. A., Sirén, J., Tomlinson, C., Villani, F., Vollger, M. R., Antonacci-Fulton, L. L., Baid, G., Baker, C. A., Belyaeva, A., Billis, K., Carroll, A., Chang, P. C., Cody, S., Cook, D. E., Cook-Deegan, R. M., Cornejo, O. E., Diekhans, M., Ebert, P., Fairley, S., Fedrigo, O., Felsenfeld, A. L., Formenti, G., Frankish, A., Gao, Y., Garrison, N. A., Giron, C. G., Green, R. E., Haggerty, L., Hoekzema, K., Hourlier, T., Ji, H. P., Kenny, E. E., Koenig, B. A., Kolesnikov, A., Korbel, J. O., Kordosky, J., Koren, S., Lee, H. J., Lewis, A. P., Magalhães, H., Marco-Sola, S., Marijon, P., McCartney, A., McDaniel, J., Mountcastle, J., Nattestad, M., Nurk, S., Olson, N. D., Popejoy, A. B., Puiu, D., Rautiainen, M., Regier, A. A., Rhie, A., Sacco, S., Sanders, A. D., Schneider, V. A., Schultz, B. I., Shafin, K., Smith, M. W., Sofia, H. J., Abou Tayoun, A. N., Thibaud-Nissen, F., Tricomi, F. F., Wagner, J., Walenz, B., Wood, J. M. D., Zimin, A. V., Bourque, G., Chaisson, M. J. P., Flicek, P., Phillippy, A. M., Zook, J. M., Eichler, E. E., Haussler, D., Wang, T., Jarvis, E. D., Miga, K. H., Garrison, E., Marschall, T., Hall, I. M., Li, H. & Paten, B., May 11 2023, In: Nature. 617, 7960, p. 312-324 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

301 Scopus citations

A functional link between lariat debranching enzyme and the intron-binding complex is defective in non-photosensitive trichothiodystrophy

Townley, B. A., Buerer, L., Tsao, N., Bacolla, A., Mansoori, F., Rusanov, T., Clark, N., Goodarzi, N., Schmidt, N., Srivatsan, S. N., Sun, H., Sample, R. A., Brickner, J. R., McDonald, D., Tsai, M. S., Walter, M. J., Wozniak, D. F., Holehouse, A. S., Pena, V. & Tainer, J. A. & 2 others, Fairbrother, W. G. & Mosammaparast, N., Jul 6 2023, In: Molecular cell. 83, 13, p. 2258-2275.e11

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Allogeneic natural killer cell therapy

Berrien-Elliott, M. M., Jacobs, M. T. & Fehniger, T. A., Feb 23 2023, In: Blood. 141, 8, p. 856-868 13 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

80 Scopus citations

A Multicenter Phase 2 Clinical Trial of 10-Day Decitabine, Dose-Escalated Donor Lymphocyte Infusion, and Ruxolitinib for Relapsed Acute Myeloid Leukemia and Myelodysplastic Syndromes after Allogeneic Hematopoietic Cell Transplantation

Rashidi, A., Huselton, E. J., Stefanski, H. E., DeFor, T. E., Shanley, R., Choi, J., DiPersio, J. F., Juckett, M., Miller, J. S., Weisdorf, D. J. & Schroeder, M. A., May 2023, In: Transplantation and Cellular Therapy. 29, 5, p. 328.e1-328.e6

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Anti-myeloma efficacy of CAR-iNKT is enhanced with a long-acting IL-7, rhIL-7-hyFc

O’Neal, J., Cooper, M. L., Ritchey, J. K., Gladney, S., Niswonger, J., González, L. S., Street, E., Haas, G. J., Carter, A., Amayta, P. N., Gao, F., Lee, B. H., Choi, D., Berrien-Elliott, M., Zhou, A., Fehniger, T. A., Rettig, M. P. & DiPersio, J. F., Oct 24 2023, In: Blood Advances. 7, 20, p. 6009-6022 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Associations between Cancer Predisposition Mutations and Clonal Hematopoiesis in Patients with Solid Tumors

Franch-Expósito, S., Mehine, M., Ptashkin, R. N., Bolton, K. L., Bandlamudi, C., Srinivasan, P., Zhang, L., Goodell, M. A., Gedvilaite, E., Menghrajani, K., Sánchez-Vela, P., Mandelker, D., Comen, E., Norton, L., Benayed, R., Gao, T., Papaemmanuil, E., Taylor, B., Levine, R. & Offit, K. & 3 others, Stadler, Z., Berger, M. F. & Zehir, A., 2023, In: JCO Precision Oncology. 7, e2300070.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (Nature Genetics, (2020), 52, 3, (331-341), 10.1038/s41588-019-0576-7)

PCAWG-Structural Variation Working Group, PCAWG Consortium, Cortés-Ciriano, I., Lee, J. J. K., Xi, R., Jain, D., Jung, Y. L., Yang, L., Gordenin, D., Klimczak, L. J., Zhang, C. Z., Pellman, D. S., Akdemir, K. C., Alvarez, E. G., Baez-Ortega, A., Beroukhim, R., Boutros, P. C., Bowtell, D. D. L., Brors, B. & Burns, K. H. & 182 others, Campbell, P. J., Chan, K., Chen, K., Cortés-Ciriano, I., Dueso-Barroso, A., Dunford, A. J., Edwards, P. A., Estivill, X., Etemadmoghadam, D., Feuerbach, L., Fink, J. L., Frenkel-Morgenstern, M., Garsed, D. W., Gerstein, M., Gordenin, D. A., Haan, D., Haber, J. E., Hess, J. M., Hutter, B., Imielinski, M., Jones, D. T. W., Ju, Y. S., Kazanov, M. D., Koh, Y., Korbel, J. O., Kumar, K., Lee, E. A., Li, Y., Lynch, A. G., Macintyre, G., Markowetz, F., Martincorena, I., Martinez-Fundichely, A., Miyano, S., Nakagawa, H., Navarro, F. C. P., Ossowski, S., Pearson, J. V., Puiggròs, M., Rippe, K., Roberts, N. D., Roberts, S. A., Rodriguez-Martin, B., Schumacher, S. E., Scully, R., Shackleton, M., Sidiropoulos, N., Sieverling, L., Stewart, C., Torrents, D., Tubio, J. M. C., Villasante, I., Waddell, N., Wala, J. A., Weischenfeldt, J., Yang, L., Yao, X., Yoon, S. S., Zamora, J., Park, P. J., Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Berney, D. M., Bernhart, S. H., Berrios, M., Bersani, S., Bertl, J., Betancourt, M., Bhandari, V., Bhosle, S. G., Biankin, A. V., Bieg, M., Bigner, D., Binder, H., Birney, E., Birrer, M., Biswas, N. K., Bjerkehagen, B., Bodenheimer, T., Boice, L., Bonizzato, G., De Bono, J. S., Boot, A., Bootwalla, M. S., Borg, A., Borkhardt, A., Boroevich, K. A., Borozan, I., Borst, C., Bosenberg, M., Bosio, M., Boultwood, J., Bourque, G., Boutros, P. C., Bova, G. S., Bowen, D. T., Ding, L., Fulton, L. A., Fulton, R. S., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Muyas, F. & Werner, J., Jun 2023, In: Nature Genetics. 55, 6, p. 1076 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

1 Scopus citations

Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer (Nature Genetics, (2020), 52, 3, (294-305), 10.1038/s41588-019-0564-y)

PCAWG-Structural Variation Working Group, PCAWG Consortium, Akdemir, K. C., Le, V. T., Chandran, S., Li, Y., Verhaak, R. G., Beroukhim, R., Campbell, P. J., Chin, L., Dixon, J. R., Futreal, P. A., Akdemir, K. C., Alvarez, E. G., Baez-Ortega, A., Boutros, P. C., Bowtell, D. D. L., Brors, B., Burns, K. H. & Campbell, P. J. & 182 others, Chan, K., Chen, K., Cortés-Ciriano, I., Dueso-Barroso, A., Dunford, A. J., Edwards, P. A., Estivill, X., Etemadmoghadam, D., Feuerbach, L., Fink, J. L., Frenkel-Morgenstern, M., Garsed, D. W., Gerstein, M., Gordenin, D. A., Haan, D., Haber, J. E., Hess, J. M., Hutter, B., Imielinski, M., Jones, D. T. W., Ju, Y. S., Kazanov, M. D., Klimczak, L. J., Koh, Y., Korbel, J. O., Kumar, K., Lee, E. A., Lee, J. J. K., Li, Y., Lynch, A. G., Macintyre, G., Markowetz, F., Martincorena, I., Martinez-Fundichely, A., Meyerson, M., Miyano, S., Nakagawa, H., Navarro, F. C. P., Ossowski, S., Park, P. J., Pearson, J. V., Puiggròs, M., Rippe, K., Roberts, N. D., Roberts, S. A., Rodriguez-Martin, B., Schumacher, S. E., Scully, R., Shackleton, M., Sidiropoulos, N., Sieverling, L., Stewart, C., Torrents, D., Tubio, J. M. C., Villasante, I., Waddell, N., Wala, J. A., Weischenfeldt, J., Yang, L., Yao, X., Yoon, S. S., Zamora, J., Zhang, C. Z., Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Berney, D. M., Bernhart, S. H., Berrios, M., Bersani, S., Bertl, J., Betancourt, M., Bhandari, V., Bhosle, S. G., Biankin, A. V., Bieg, M., Bigner, D., Binder, H., Birney, E., Birrer, M., Biswas, N. K., Bjerkehagen, B., Bodenheimer, T., Boice, L., Bonizzato, G., De Bono, J. S., Boot, A., Bootwalla, M. S., Borg, A., Borkhardt, A., Boroevich, K. A., Borozan, I., Borst, C., Bosenberg, M., Bosio, M., Boultwood, J., Bourque, G., Ding, L., Fulton, L. A., Fulton, R. S., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Muyas, F. & Werner, J., Jun 2023, In: Nature Genetics. 55, 6, p. 1079 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

Author Correction: The landscape of viral associations in human cancers (Nature Genetics, (2020), 52, 3, (320-330), 10.1038/s41588-019-0558-9)

PCAWG Pathogens, PCAWG Consortium, Zapatka, M., Borozan, I., Brewer, D. S., Iskar, M., Grundhoff, A., Alawi, M., Desai, N., Sültmann, H., Moch, H., Alawi, M., Borozan, I., Cooper, C. S., Desai, N., Eils, R., Ferretti, V., Grundhoff, A., Iskar, M. & Kleinheinz, K. & 182 others, Lichter, P., Nakagawa, H., Ojesina, A. I., Pedamallu, C. S., Schlesner, M., Su, X., Zapatka, M., Cooper, C. S., Ferretti, V., Lichter, P., Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Berney, D. M., Bernhart, S. H., Beroukhim, R., Berrios, M., Bersani, S., Bertl, J., Betancourt, M., Bhandari, V., Bhosle, S. G., Biankin, A. V., Bieg, M., Bigner, D., Binder, H., Birney, E., Birrer, M., Biswas, N. K., Bjerkehagen, B., Bodenheimer, T., Boice, L., Bonizzato, G., De Bono, J. S., Boot, A., Bootwalla, M. S., Borg, A., Borkhardt, A., Boroevich, K. A., Borozan, I., Borst, C., Bosenberg, M., Bosio, M., Boultwood, J., Bourque, G., Boutros, P. C., Bova, G. S., Bowen, D. T., Bowlby, R., Bowtell, D. D. L., Boyault, S., Boyce, R., Boyd, J., Brazma, A., Brennan, P., Brinkman, A. B., Bristow, R. G., Broaddus, R. R., Brock, J. E., Brock, M., Broeks, A., Brooks, A. N., Brooks, D., Brors, B., Brunak, S., Bruxner, T. J. C., Bruzos, A. L., Buchanan, A., Buchhalter, I., Buchholz, C., Bullman, S., Burke, H., Burkhardt, B., Burns, K. H., Busanovich, J., Bustamante, C. D., Butler, A. P., Butte, A. J., Byrne, N. J., Børresen-Dale, A. L., Caesar-Johnson, S. J., Cafferkey, A., Cahill, D., Calabrese, C., Caldas, C., Calvo, F., Camacho, N., Campbell, P. J., Campo, E., Cantù, C., Cao, S., Carey, T. E., Carlevaro-Fita, J., Carlsen, R., Cataldo, I., Cazzola, M., Cebon, J., Ding, L., Fulton, L. A., Fulton, R. S., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Mutch, D. & Wendl, M. C., Jun 2023, In: Nature Genetics. 55, 6, p. 1077 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

Author Correction: The evolutionary history of 2,658 cancers (Nature, (2020), 578, 7793, (122-128), 10.1038/s41586-019-1907-7)

PCAWG Evolution & Heterogeneity Working Group, PCAWG Consortium, Gerstung, M., Jolly, C., Leshchiner, I., Dentro, S. C., Gonzalez, S., Rosebrock, D., Mitchell, T. J., Rubanova, Y., Anur, P., Yu, K., Tarabichi, M., Deshwar, A., Wintersinger, J., Kleinheinz, K., Vázquez-García, I., Haase, K., Jerman, L. & Sengupta, S. & 182 others, Macintyre, G., Malikic, S., Donmez, N., Livitz, D. G., Cmero, M., Demeulemeester, J., Schumacher, S., Fan, Y., Yao, X., Lee, J., Schlesner, M., Boutros, P. C., Bowtell, D. D. L., Zhu, H., Getz, G., Imielinski, M., Beroukhim, R., Sahinalp, S. C., Ji, Y., Peifer, M., Markowetz, F., Mustonen, V., Yuan, K., Wang, W., Morris, Q. D., Dentro, S. C., Leshchiner, I., Gerstung, M., Jolly, C., Haase, K., Tarabichi, M., Wintersinger, J., Deshwar, A. G., Yu, K., Gonzalez, S., Rubanova, Y., Macintyre, G., Adams, D. J., Anur, P., Boutros, P. C., Campbell, P. J., Cao, S., Christie, E. L., Cmero, M., Cun, Y., Dawson, K. J., Demeulemeester, J., Donmez, N., Drews, R. M., Fan, Y., Fittall, M., Garsed, D. W., Getz, G., Ha, G., Imielinski, M., Jerman, L., Ji, Y., Kleinheinz, K., Lee, J., Lee-Six, H., Livitz, D. G., Malikic, S., Markowetz, F., Martincorena, I., Mitchell, T. J., Mustonen, V., Oesper, L., Peifer, M., Peto, M., Raphael, B. J., Rosebrock, D., Sahinalp, S. C., Salcedo, A., Schlesner, M., Schumacher, S., Sengupta, S., Shi, R., Shin, S. J., Spiro, O., Stein, L. D., Vázquez-García, I., Vembu, S., Wheeler, D. A., Yang, T. P., Yao, X., Yuan, K., Zhu, H., Wang, W., Morris, Q. D., Spellman, P. T., Wedge, D. C., Van Loo, P., Wedge, D. C., Van Loo, P., Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Ding, L., Fulton, L. A., Fulton, R. S., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Mutch, D. & Wendl, M. C., Feb 16 2023, In: Nature. 614, 7948, p. E42

Research output: Contribution to journal › Comment/debate

Open Access

2 Scopus citations

Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (Nature Genetics, (2020), 52, 3, (306-319), 10.1038/s41588-019-0562-0)

PCAWG-Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature Genetics. 55, 6, p. 1080 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

1 Scopus citations

Author Correction: The repertoire of mutational signatures in human cancer (Nature, (2020), 578, 7793, (94-101), 10.1038/s41586-020-1943-3)

PCAWG Mutational Signatures Working Group, PCAWG Consortium, Alexandrov, L. B., Kim, J., Haradhvala, N. J., Huang, M. N., Tian Ng, A. W., Wu, Y., Boot, A., Covington, K. R., Gordenin, D. A., Bergstrom, E. N., Islam, S. M. A., Lopez-Bigas, N., Klimczak, L. J., McPherson, J. R., Morganella, S., Sabarinathan, R., Wheeler, D. A. & Mustonen, V. & 182 others, Alexandrov, L. B., Bergstrom, E. N., Boot, A., Boutros, P., Chan, K., Covington, K. R., Fujimoto, A., Getz, G., Gordenin, D. A., Haradhvala, N. J., Huang, M. N., Islam, S. M. A., Kazanov, M., Kim, J., Klimczak, L. J., Lawrence, M., Martincorena, I., McPherson, J. R., Morganella, S., Mustonen, V., Nakagawa, H., Tian Ng, A. W., Polak, P., Prokopec, S., Roberts, S. A., Rozen, S. G., Sabarinathan, R., Saini, N., Shibata, T., Shiraishi, Y., Stratton, M. R., Teh, B. T., Vázquez-García, I., Wheeler, D. A., Wu, Y., Yousif, F., Yu, W., Getz, G., Rozen, S. G., Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Berney, D. M., Bernhart, S. H., Beroukhim, R., Berrios, M., Bersani, S., Bertl, J., Betancourt, M., Bhandari, V., Bhosle, S. G., Biankin, A. V., Bieg, M., Bigner, D., Binder, H., Birney, E., Birrer, M., Biswas, N. K., Bjerkehagen, B., Bodenheimer, T., Boice, L., Bonizzato, G., De Bono, J. S., Boot, A., Bootwalla, M. S., Borg, A., Borkhardt, A., Boroevich, K. A., Borozan, I., Borst, C., Bosenberg, M., Bosio, M., Boultwood, J., Bourque, G., Boutros, P. C., Bova, G. S., Bowen, D. T., Bowlby, R., Bowtell, D. D. L., Boyault, S., Boyce, R., Boyd, J., Brazma, A., Brennan, P., Brewer, D. S., Brinkman, A. B., Bristow, R. G., Broaddus, R. R., Brock, J. E., Brock, M., Broeks, A., Brooks, A. N., Brooks, D., Brors, B., Brunak, S., Bruxner, T. J. C., Bruzos, A. L., Buchanan, A., Ding, L., Fulton, L. A., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Mutch, D. & Wendl, M. C., Feb 16 2023, In: Nature. 614, 7948, p. E41

Research output: Contribution to journal › Comment/debate

Open Access

4 Scopus citations

Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

PCAWG Consortium, Yuan, Y., Ju, Y. S., Kim, Y., Li, J., Wang, Y., Yoon, C. J., Yang, Y., Martincorena, I., Creighton, C. J., Weinstein, J. N., Xu, Y., Han, L., Kim, H. L., Nakagawa, H., Park, K., Campbell, P. J., Liang, H., Aaltonen, L. A. & Abascal, F. & 181 others, Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Berney, D. M., Bernhart, S. H., Beroukhim, R., Berrios, M., Bersani, S., Bertl, J., Betancourt, M., Bhandari, V., Bhosle, S. G., Biankin, A. V., Bieg, M., Bigner, D., Binder, H., Birney, E., Birrer, M., Biswas, N. K., Bjerkehagen, B., Bodenheimer, T., Boice, L., Bonizzato, G., De Bono, J. S., Boot, A., Bootwalla, M. S., Borg, A., Borkhardt, A., Boroevich, K. A., Borozan, I., Borst, C., Bosenberg, M., Bosio, M., Boultwood, J., Bourque, G., Boutros, P. C., Bova, G. S., Bowen, D. T., Bowlby, R., Bowtell, D. D. L., Boyault, S., Boyce, R., Boyd, J., Brazma, A., Brennan, P., Brewer, D. S., Brinkman, A. B., Bristow, R. G., Broaddus, R. R., Brock, J. E., Brock, M., Broeks, A., Brooks, A. N., Brooks, D., Brors, B., Brunak, S., Bruxner, T. J. C., Bruzos, A. L., Buchanan, A., Buchhalter, I., Buchholz, C., Bullman, S., Burke, H., Burkhardt, B., Burns, K. H., Busanovich, J., Bustamante, C. D., Butler, A. P., Butte, A. J., Byrne, N. J., Børresen-Dale, A. L., Caesar-Johnson, S. J., Cafferkey, A., Cahill, D., Calabrese, C., Caldas, C., Calvo, F., Camacho, N., Campbell, P. J., Campo, E., Cantù, C., Cao, S., Carey, T. E., Carlevaro-Fita, J., Carlsen, R., Cataldo, I., Cazzola, M., Cebon, J., Cerfolio, R., Chadwick, D. E., Chakravarty, D., Chalmers, D., Chan, C. W. Y., Chan, K., Chan-Seng-Yue, M., Chandan, V. S., Chang, D. K., Chanock, S. J., Ding, L., Fulton, L. A., Fulton, R. S., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Mutch, D. & Wendl, M. C., May 2023, In: Nature Genetics. 55, 5, p. 892 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

2 Scopus citations

Author Correction: Patterns of somatic structural variation in human cancer genomes (Nature, (2020), 578, 7793, (112-121), 10.1038/s41586-019-1913-9)

PCAWG-Structural Variation Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E38

Research output: Contribution to journal › Comment/debate

Open Access

2 Scopus citations

Author Correction: Genomic basis for RNA alterations in cancer (Nature, (2020), 578, 7793, (129-136), 10.1038/s41586-020-1970-0)

PCAWG Transcriptome Core Group, PCAWG Transcriptome Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E37

Research output: Contribution to journal › Comment/debate

Open Access

Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6)

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E39

Research output: Contribution to journal › Comment/debate

Open Access

1 Scopus citations

Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes (Nature Biotechnology, (2020), 38, 3, (288-292), 10.1038/s41587-019-0360-3)

PCAWG Technical Working Group & PCAWG Consortium, Apr 2023, In: Nature Biotechnology. 41, 4, p. 577 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature, (2020), 578, 7793, (102-111), 10.1038/s41586-020-1965-x)

PCAWG Drivers and Functional Interpretation Working Group, PCAWG-Structural Variation Working Group & PCAWG Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E40

Research output: Contribution to journal › Comment/debate

Open Access

2 Scopus citations

Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

PCAWG Consortium, Yuan, Y., Ju, Y. S., Kim, Y., Li, J., Wang, Y., Yoon, C. J., Yang, Y., Martincorena, I., Creighton, C. J., Weinstein, J. N., Xu, Y., Han, L., Kim, H. L., Nakagawa, H., Park, K., Campbell, P. J., Liang, H., Aaltonen, L. A. & Abascal, F. & 181 others, Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., Ahn, K. S., Ahn, S. M., Aikata, H., Akbani, R., Akdemir, K. C., Al-Ahmadie, H., Al-Sedairy, S. T., Al-Shahrour, F., Alawi, M., Albert, M., Aldape, K., Alexandrov, L. B., Ally, A., Alsop, K., Alvarez, E. G., Amary, F., Amin, S. B., Aminou, B., Ammerpohl, O., Anderson, M. J., Ang, Y., Antonello, D., Anur, P., Aparicio, S., Appelbaum, E. L., Arai, Y., Aretz, A., Arihiro, K., Ariizumi, S. I., Armenia, J., Arnould, L., Asa, S., Assenov, Y., Atwal, G., Aukema, S., Auman, J. T., Aure, M. R. R., Awadalla, P., Aymerich, M., Bader, G. D., Baez-Ortega, A., Bailey, M. H., Bailey, P. J., Balasundaram, M., Balu, S., Bandopadhayay, P., Banks, R. E., Barbi, S., Barbour, A. P., Barenboim, J., Barnholtz-Sloan, J., Barr, H., Barrera, E., Bartlett, J., Bartolome, J., Bassi, C., Bathe, O. F., Baumhoer, D., Bavi, P., Baylin, S. B., Bazant, W., Beardsmore, D., Beck, T. A., Behjati, S., Behren, A., Niu, B., Bell, C., Beltran, S., Benz, C., Berchuck, A., Bergmann, A. K., Bergstrom, E. N., Berman, B. P., Berney, D. M., Bernhart, S. H., Beroukhim, R., Berrios, M., Bersani, S., Bertl, J., Betancourt, M., Bhandari, V., Bhosle, S. G., Biankin, A. V., Bieg, M., Bigner, D., Binder, H., Birney, E., Birrer, M., Biswas, N. K., Bjerkehagen, B., Bodenheimer, T., Boice, L., Bonizzato, G., De Bono, J. S., Boot, A., Bootwalla, M. S., Borg, A., Borkhardt, A., Boroevich, K. A., Borozan, I., Borst, C., Bosenberg, M., Bosio, M., Boultwood, J., Bourque, G., Boutros, P. C., Bova, G. S., Bowen, D. T., Bowlby, R., Bowtell, D. D. L., Boyault, S., Boyce, R., Boyd, J., Brazma, A., Brennan, P., Brewer, D. S., Brinkman, A. B., Bristow, R. G., Broaddus, R. R., Brock, J. E., Brock, M., Broeks, A., Brooks, A. N., Brooks, D., Brors, B., Brunak, S., Bruxner, T. J. C., Bruzos, A. L., Buchanan, A., Buchhalter, I., Buchholz, C., Bullman, S., Burke, H., Burkhardt, B., Burns, K. H., Busanovich, J., Bustamante, C. D., Butler, A. P., Butte, A. J., Byrne, N. J., Børresen-Dale, A. L., Caesar-Johnson, S. J., Cafferkey, A., Cahill, D., Calabrese, C., Caldas, C., Calvo, F., Camacho, N., Campbell, P. J., Campo, E., Cantù, C., Cao, S., Carey, T. E., Carlevaro-Fita, J., Carlsen, R., Cataldo, I., Cazzola, M., Cebon, J., Cerfolio, R., Chadwick, D. E., Chakravarty, D., Chalmers, D., Chan, C. W. Y., Chan, K., Chan-Seng-Yue, M., Chandan, V. S., Chang, D. K., Chanock, S. J., Ding, L., Fulton, L. A., Fulton, R. S., Govindan, R., Jayasinghe, R., Ley, T., Miller, C. A., Mutch, D. & Wendl, M. C., Jun 2023, In: Nature Genetics. 55, 6, p. 1078 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

Autologous humanized PDX modeling for immuno-oncology recapitulates features of the human tumor microenvironment

Chiorazzi, M., Martinek, J., Krasnick, B., Zheng, Y., Robbins, K. J., Qu, R., Kaufmann, G., Skidmore, Z., Juric, M., Henze, L. A., Brösecke, F., Adonyi, A., Zhao, J., Shan, L., Sefik, E., Mudd, J., Bi, Y., Goedegebuure, S. P., Griffith, M. & Griffith, O. & 14 others, Oyedeji, A., Fertuzinhos, S., Garcia-Milian, R., Boffa, D., Detterbeck, F., Dhanasopon, A., Blasberg, J., Judson, B., Gettinger, S., Politi, K., Kluger, Y., Palucka, K., Fields, R. C. & Flavell, R. A., Jul 24 2023, In: Journal for ImmunoTherapy of Cancer. 11, 7, e006921.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Baricitinib with cyclosporine eliminates acute graft rejection in fully mismatched skin and heart transplant models

Abboud, R., Kim, S., Staser, K., Jayasinghe, R. G., Lim, S., Amatya, P., Frye, C. C., Kopecky, B., Ritchey, J., Gao, F., Lavine, K., Kreisel, D., DiPersio, J. F. & Choi, J., 2023, In: Frontiers in immunology. 14, 1264496.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Bendamustine/Rituximab Plus Cytarabine/Rituximab, With or Without Acalabrutinib, for the Initial Treatment of Transplant-Eligible Mantle Cell Lymphoma Patients: Pooled Data From Two Pilot Studies

Patel, D. A., Wan, F., Trinkaus, K., Guy, D. G., Edwin, N., Watkins, M., Bartlett, N. L., Cashen, A., Fehniger, T. A., Ghobadi, A., Shah, N. M. & Kahl, B. S., Jul 2023, In: Clinical Lymphoma, Myeloma and Leukemia. 23, 7, p. 552-560 9 p.

Research output: Contribution to journal › Article › peer-review

Cell-of-origin effect of polatuzumab vedotin in diffuse large B-cell lymphoma: no ordinary subgroup analysis

Russler-Germain, D. A., Cliff, E. R. S. & Bartlett, N. L., Dec 21 2023, In: Blood. 142, 25, p. 2216-2219 4 p.

Research output: Contribution to journal › Article › peer-review

10 Scopus citations

Cellular states are coupled to genomic and viral heterogeneity in HPV-related oropharyngeal carcinoma

Puram, S. V., Mints, M., Pal, A., Qi, Z., Reeb, A., Gelev, K., Barrett, T. F., Gerndt, S., Liu, P., Parikh, A. S., Ramadan, S., Law, T., Mroz, E. A., Rocco, J. W., Adkins, D., Thorstad, W. L., Gay, H. A., Ding, L., Paniello, R. C. & Pipkorn, P. & 7 others, Jackson, R. S., Wang, X., Mazul, A., Chernock, R., Zevallos, J. P., Silva-Fisher, J. & Tirosh, I., Apr 2023, In: Nature Genetics. 55, 4, p. 640-650 11 p.

Research output: Contribution to journal › Article › peer-review

21 Scopus citations

Characteristics of post hoc subgroup analyses of oncology clinical trials: a systematic review

Alrawabdeh, J., Alzu'bi, M., Alzyoud, M., Odeh, N., Hamadneh, Y., Mian, H., Mohyuddin, G. R., Kelkar, A. H., Goodman, A. M., Chakraborty, R., Russler-Germain, D. A., Mehra, N., Baggio, D., Scheffer Cliff, E. R. & Al Hadidi, S., Dec 1 2023, In: JNCI Cancer Spectrum. 7, 6, pkad100.

Research output: Contribution to journal › Review article › peer-review

Open Access

1 Scopus citations

Characterization of cell-Type specific circular RNAs associated with colorectal cancer metastasis

Zhao, S., Ly, A., Mudd, J. L., Rozycki, E. B., Webster, J., Coonrod, E., Othoum, G., Luo, J., Dang, H., Fields, R. C. & Maher, C. A., Jun 1 2023, In: NAR Cancer. 5, 2, zcad021.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase

Krysiak, K., Danos, A. M., Saliba, J., McMichael, J. F., Coffman, A. C., Kiwala, S., Barnell, E. K., Sheta, L., Grisdale, C. J., Kujan, L., Pema, S., Lever, J., Ridd, S., Spies, N. C., Andric, V., Chiorean, A., Rieke, D. T., Clark, K. A., Reisle, C. & Venigalla, A. C. & 45 others, Evans, M., Jani, P., Takahashi, H., Suda, A., Horak, P., Ritter, D. I., Zhou, X., Ainscough, B. J., Delong, S., Kesserwan, C., Lamping, M., Shen, H., Marr, A. R., Hoang, M. H., Singhal, K., Khanfar, M., Li, B. V., Lin, W. H., Terraf, P., Corson, L. B., Salama, Y., Campbell, K. M., Farncombe, K. M., Ji, J., Zhao, X., Xu, X., Kanagal-Shamanna, R., King, I., Cotto, K. C., Skidmore, Z. L., Walker, J. R., Zhang, J., Milosavljevic, A., Patel, R. Y., Giles, R. H., Kim, R. H., Schriml, L. M., Mardis, E. R., Jones, S. J. M., Raca, G., Rao, S., Madhavan, S., Wagner, A. H., Griffith, M. & Griffith, O. L., Jan 6 2023, In: Nucleic acids research. 51, 1 D, p. D1230-D1241

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Clinical Importance of Clonal Hematopoiesis in Metastatic Gastrointestinal Tract Cancers

Diplas, B. H., Ptashkin, R., Chou, J. F., Sabwa, S., Foote, M. B., Rousseau, B., Argilés, G., White, J. R., Stewart, C. M., Bolton, K., Chalasani, S. B., Desai, A. M., Goldberg, Z., Gu, P., Li, J., Shcherba, M., Zervoudakis, A., Cercek, A., Yaeger, R. & Segal, N. H. & 7 others, Ilson, D. H., Ku, G. Y., Zehir, A., Capanu, M., Janjigian, Y. Y., Diaz, L. A. & Maron, S. B., Feb 2 2023, In: JAMA Network Open. 6, 2, e2254221.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Clonal Hematopoiesis and Risk of Incident Lung Cancer

Tian, R., Wiley, B., Liu, J., Zong, X., Truong, B., Zhao, S., Uddin, M. M., Niroula, A., Miller, C. A., Mukherjee, S., Heiden, B. T., Luo, J., Puri, V., Kozower, B. D., Walter, M. J., Ding, L., Link, D. C., Amos, C. I., Ebert, B. L. & Govindan, R. & 3 others, Natarajan, P., Bolton, K. L. & Cao, Y., Mar 1 2023, In: Journal of Clinical Oncology. 41, 7, p. 1423-1433 11 p.

Research output: Contribution to journal › Article › peer-review

23 Scopus citations

Clonal hematopoiesis in survivors of childhood cancer

Friedman, D. N., Chan, I. C. C., Moskowitz, C. S., Li, S., Turner, K., Liu, J., Bouvier, N., Walsh, M. F., Spitzer, B., Kung, A. L., Berger, M., Cooper, M. A., Pusic, I., Uy, G., Link, D., Druley, T. E., Diaz, L. A., Levine, R. L., Shukla, N. & Bolton, K. L., Aug 8 2023, In: Blood Advances. 7, 15, p. 4102-4106 5 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

14 Scopus citations

Combinatorial BCL2 Family Expression in Acute Myeloid Leukemia Stem Cells Predicts Clinical Response to Azacitidine/Venetoclax

Waclawiczek, A., Leppä, A. M., Renders, S., Stumpf, K., Reyneri, C., Betz, B., Janssen, M., Shahswar, R., Donato, E., Karpova, D., Thiel, V., Unglaub, J. M., Grabowski, S., Gryzik, S., Vierbaum, L., Schlenk, R. F., Röllig, C., Hundemer, M., Pabst, C. & Heuser, M. & 4 others, Raffel, S., Müller-Tidow, C., Sauer, T. & Trumpp, A., 2023, In: Cancer discovery. 13, 6, p. 1408-1427 20 p.

Research output: Contribution to journal › Article › peer-review

Open Access

32 Scopus citations

Section of Stem Cell Biology

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