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  • 2023

    Non-invasive classification of IDH mutation status of gliomas from multi-modal MRI using a 3D convolutional neural network

    Chakrabarty, S., LaMontagne, P., Shimony, J., Marcus, D. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124650W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2022

    Modeling venous plasma samples in [18F] FDG PET studies: a nonlinear mixed-effects approach

    Volpi, T., Lee, J. J., Silvestri, E., Durbin, T., Corbetta, M., Goyal, M. S., Vlassenko, A. G. & Bertoldo, A., 2022, 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2022. Institute of Electrical and Electronics Engineers Inc., p. 4704-4707 4 p. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2022-July).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2021

    Geometric Deep Learning of the Human Connectome Project Multimodal Cortical Parcellation

    Williams, L. Z. J., Fawaz, A., Glasser, M. F., Edwards, A. D. & Robinson, E. C., 2021, Machine Learning in Clinical Neuroimaging - 4th International Workshop, MLCN 2021, Held in Conjunction with MICCAI 2021, Proceedings. Abdulkadir, A., Kia, S. M., Habes, M., Kumar, V., Rondina, J. M., Tax, C., Tax, C. & Wolfers, T. (eds.). Springer Science and Business Media Deutschland GmbH, p. 103-112 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13001 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    4 Scopus citations
  • 2018

    Gaussian processes with optimal kernel construction for neuro-degenerative clinical onset prediction

    Canas, L. S., Yvernault, B., Cash, D. M., Molteni, E., Veale, T., Benzinger, T., Ourselin, S., Mead, S. & Modat, M., 2018, Medical Imaging 2018: Computer-Aided Diagnosis. Mori, K. & Petrick, N. (eds.). SPIE, 105750G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10575).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Optical imaging in a mouse model of Glioma Identifies different causes for proximal and distal disruptions to functional connectivity

    Orukari, I., Siegel, J. S., Bauer, A. Q., Baxter, G. A., Shimony, J. S., Rubin, J. B. & Culver, J. P., 2018, Optics and the Brain, BRAIN 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F88-BRAIN 2018).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2015

    Early postnatal myelin content estimate of white matter via T1w/T2w ratio

    Lee, K., Cherel, M., Budin, F., Gilmore, J., Consing, K. Z., Rasmussen, J., Wadhwa, P. D., Entringer, S., Glasser, M. F., Van Essen, D. C., Buss, C. & Styner, M., 2015, Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Molthen, R. C. (eds.). SPIE, 94171R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9417).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    23 Scopus citations
  • 2013

    Direction and speed tuning of motor-cortex multi-unit activity and local field potentials during reaching movements

    Perel, S., Sadtler, P. T., Godlove, J. M., Ryu, S. I., Wang, W., Batista, A. P. & Chase, S. M., 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 299-302 4 p. 6609496. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    11 Scopus citations
  • Multimodal surface matching: Fast and generalisable cortical registration using discrete optimisation

    Robinson, E. C., Jbabdi, S., Andersson, J., Smith, S., Glasser, M. F., Van Essen, D. C., Burgess, G., Harms, M. P., Barch, D. M. & Jenkinson, M., 2013, Information Processing in Medical Imaging - 23rd International Conference, IPMI 2013, Proceedings. p. 475-486 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7917 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    31 Scopus citations
  • Predicting a multi-parametric probability map of active tumor extent using random forests

    Prior, F. W., Fouke, S. J., Benzinger, T., Boyd, A., Chicoine, M., Cholleti, S., Kelsey, M., Keogh, B., Kim, L., Milchenko, M., Politte, D. G., Tyree, S., Weinberger, K. & Marcus, D., 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 6478-6481 4 p. 6611038. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    8 Scopus citations
  • 2012

    Sparse linear regression with elastic net regularization for brain-computer interfaces

    Kelly, J. W., Degenhart, A. D., Siewiorek, D. P., Smailagic, A. & Wang, W., 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 4275-4278 4 p. 6346911. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    10 Scopus citations
  • Stable online control of an electrocorticographic brain-computer interface using a static decoder

    Ashmore, R. C., Endler, B. M., Smalianchuk, I., Degenhart, A. D., Hatsopoulos, N. G., Tyler-Kabara, E. C., Batista, A. P. & Wang, W., 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 1740-1744 5 p. 6346285. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    12 Scopus citations
  • 2011

    Classification of hand posture from electrocorticographic signals recorded during varying force conditions

    Degenhart, A. D., Collinger, J. L., Vinjamuri, R., Kelly, J. W., Tyler-Kabara, E. C. & Wang, W., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 5782-5785 4 p. 6091431. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Decoding semantic information from human electrocorticographic (ECoG) signals

    Wang, W., Degenhart, A. D., Sudre, G. P., Pomerleau, D. A. & Tyler-Kabara, E. C., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 6294-6298 5 p. 6091553. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    38 Scopus citations
  • Frequency tracking and variable bandwidth for line noise filtering without a reference

    Kelly, J. W., Collinger, J. L., Degenhart, A. D., Siewiorek, D. P., Smailagic, A. & Wang, W., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 7908-7911 4 p. 6091950. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Stability of MEG for real-time neurofeedback

    Foldes, S. T., Vinjamuri, R. K., Wang, W., Weber, D. J. & Collinger, J. L., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 5778-5781 4 p. 6091430. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Task-related MEG source localization via discriminant analysis

    Zhang, J., Sudre, G., Li, X., Wang, W., Weber, D. J. & Bagic, A., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 2351-2354 4 p. 6090657. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    4 Scopus citations
  • The impact of electrode characteristics on electrocorticography (ECoG)

    Wodlinger, B., Degenhart, A. D., Collinger, J. L., Tyler-Kabara, E. C. & Wang, W., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 3083-3086 4 p. 6090842. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    20 Scopus citations
  • 2010

    CFD simulation of flow mixing in the vertobrobasilar system

    Bockman, M. D., Kansagra, A. P., Wong, E. C. & Marsden, A. L., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 679-680 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Cluster-based algorithm for ROI analysis and cognitive state decoding using single-trial source MEG data

    Sudre, G., Xu, Y., Kass, R., Weber, D. J. & Wang, W., 2010, 17th International Conference on Biomagnetism Advances in Biomagnetism - Biomag2010. p. 187-190 4 p. (IFMBE Proceedings; vol. 28).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • rtMEG: A real-time software toolbox for brain-machine interfaces using magnetoencephelography

    Sudre, G., Wang, W., Song, T., Kajola, M., Vinjamuri, R., Collinger, J., Degenhart, A., Bagic, A. & Weber, D. J., 2010, 17th International Conference on Biomagnetism Advances in Biomagnetism - Biomag2010. p. 362-365 4 p. (IFMBE Proceedings; vol. 28).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    2 Scopus citations
  • 2009

    A fuzzy logic model for hand posture control using human cortical activity recorded by micro-ECoG electrodes

    Vinjamuri, R., Weber, D. J., Degenhart, A. D., Collinger, J. L., Sudre, G. P., Adelson, P. D., Holder, D. L., Boninger, M. L., Schwartz, A. B., Crammond, D. J., Tyler-Kabara, E. C. & Wang, W., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 4339-4342 4 p. 5332746. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    9 Scopus citations
  • Human motor cortical activity recorded with micro-ECoG electrodes during individual finger movements

    Wang, W., Degenhart, A. D., Collinger, J. L., Vinjamuri, R., Sudre, G. P., Adelson, P. D., Holder, D. L., Leuthardt, E. C., Moran, D. W., Boninger, M. L., Schwartz, A. B., Crammond, D. J., Tyler-Kabara, E. C. & Weber, D. J., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 586-589 4 p. 5333704. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    102 Scopus citations
  • Quantizing and characterizing the variance of hand postures in a novel transformation task

    Vinjamuri, R., Sun, M., Weber, D., Wang, W., Crammond, D. & Mao, Z. H., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 5312-5315 4 p. 5333074. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • 2007

    Computing the probability of local brain connectivity using diffusion tensor imaging

    Shimony, J. S., Epstein, A. A. & Bretthorst, G. L., 2007, Bayesian Inference and Maximum Entropy Methods in Science and Engineering - 27th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, MaxEnt 2007. p. 346-353 8 p. (AIP Conference Proceedings; vol. 954).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • Directional diffusivity as a magnetic resonance (MR) biomarker in demyelinating disease

    Benzinger, T. L. S., Cross, A. H., Xu, J., Naismith, R., Sun, S. W. & Song, S. K., 2007, Smart Biomedical and Physiological Sensor Technology V. 67590O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6759).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2005

    Estimation of cerebral blood flow from dynamic susceptibility contrast MRI using a tissue model

    Shimony, J. S., Lee, J. J. & Bretthorst, G. L., Nov 23 2005, BAYESIAN INFERENCE AND MAXIMUM ENTROPY METHODS IN SCIENCE AND ENGINEERING: 25th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering. p. 535-542 8 p. (AIP Conference Proceedings; vol. 803).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 1990

    Conductive, interstitial hyperthermia: A new modality for treatment of intracranial tumors

    Marchosky, J. A., Babbs, C. F., Moran, C. J., Fearnot, N. E., DeFord, J. A. & Welsh, D. M., 1990, Advances in Experimental Medicine and Biology. p. 129-143 15 p. (Advances in Experimental Medicine and Biology; vol. 267).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations