Intellectual and Developmental Disabilities Research Center (IDDRC)

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  • 2025

    Integrated two-photon and photoacoustic microscopy for neurovascular imaging

    Han, J., Lee, Y., Feng, Z., Yang, K., Mejia, A. M., Lee, J.-M., Kepecs, A., Zhang, H. F., Sun, C. & Hu, S., 2025, Photons Plus Ultrasound: Imaging and Sensing 2025. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 133190P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 13319).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Laser-Engineered Fiber for Reconfigurable Control of Neural Activity

    Yang, S., Yang, K., Chevy, Q., Kepecs, A. & Hu, S., 2025, Optogenetics and Optical Manipulation 2025. Roe, A. W. & Shoham, S. (eds.). SPIE, 1330403. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 13304).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • NeuroDOT: a Matlab and Python Toolbox for Diffuse Optical Tomographic Brain Mapping

    Speh, E., Thacker, Y., Segel, A., Marcus, D., Wheelock, M. D. & Eggebrecht, A. T., 2025, Optical Tomography and Spectroscopy of Tissue XVI. Fantini, S. & Taroni, P. (eds.). SPIE, 1331413. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 13314).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2024

    An independent replicability study of MesoNet for automated segmentation and landmark identification in functional widefield optical imaging in mice

    Yuan, A., Fisher, H. B., Padawer-Curry, J., Bauer, A. Q. & White, B. R., 2024, Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A Pipeline for Histopathology Analysis of Prostate Cancer Guided by Mass Spectrometry Imaging

    Luna, J. M., Nakhoul, H., Weimholt, C., Kim, E. H., Song, S. K., Angel, P. M., Drake, R. R. & Ippolito, J. E., 2024, IEEE International Symposium on Biomedical Imaging, ISBI 2024 - Conference Proceedings. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Big Data Decision-Making and Racial Disparities: A Case Study Among COVID-19 Inpatient Visits

    Haghighathoseini, A., Wojtusiak, J., Menon, N. M., Min, H., Frankenfeld, C., Leslie, T., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A., Zhou, A., Williams, A. E., Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A. & Amor, B. & 114 others, Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Brown, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Hayanga, J. W. A., Pincavitch, J., Clark, J., Harper, J. R., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Saltz, J., Loomba, J., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2024, Proceedings - 2024 IEEE International Conference on Big Data, BigData 2024. Ding, W., Lu, C.-T., Wang, F., Di, L., Wu, K., Huan, J., Nambiar, R., Li, J., Ilievski, F., Baeza-Yates, R. & Hu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 6452-6459 8 p. (Proceedings - 2024 IEEE International Conference on Big Data, BigData 2024).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Characterization of Anisotropic Lattice Structured Phantoms Using 3D-Rotational Shear Wave Elasticity Imaging (3D-RSWEI)

    Srinivasan, S., Yoon, D., Ruding, M., Eckstein, K., Rouze, N. C., Wightman, W. E., Palmeri, M. L., Bradway, D. P., Chan, D. Y., Bock, K. D., Bayly, P. V. & Nightingale, K. R., 2024, IEEE Ultrasonics, Ferroelectrics, and Frequency Control Joint Symposium, UFFC-JS 2024 - Proceedings. Institute of Electrical and Electronics Engineers Inc., (IEEE Ultrasonics, Ferroelectrics, and Frequency Control Joint Symposium, UFFC-JS 2024 - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Concurrent Light-Based Motor Mapping of Multiple Limbs Using Deep-Learning-Driven Pose Estimation

    Khanal, N., Padawer-Curry, J., Bice, A. R. & Bauer, A. Q., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Cortical Organization of Ethological-like, Multi-Limb Movements

    Padawer-Curry, J. A., Khanal, N., Morris, E. W., Bice, A. R. & Bauer, A. Q., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Data-driven modeling of neural dynamics from EEG to track physiological changes

    Schwamb, A., Singh, M., Guerriero, R. & Ching, S. N., 2024, 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2024 - Proceedings. Institute of Electrical and Electronics Engineers Inc., (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Echocardiogram image segmentation and cardiac adipose tissue estimation using spectral analysis and deep learning

    Cuellar, J. R., Gillette, L., Dinh, V., Woodard, P., Burri, M. & Klingensmith, J. D., 2024, Medical Imaging 2024: Ultrasonic Imaging and Tomography. Boehm, C. & Bottenus, N. (eds.). SPIE, 129320C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12932).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Effects of Matrix Conditioning strategies on Multifrequency High-density Diffuse Optical Tomography

    Zhang, C., Fan, W. & Eggebrecht, A. T., 2024, Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Efficient Template-Based Decoding of Naturalistic Movie Stimuli in Mice

    Li, Z., Chen, S., Bice, A. R., Gaines, S. H. & Culver, J. P., 2024, Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Evaluating functional connectivity during motor imitation using diffuse optical tomography

    Park, S. M., George, T. G., Sobolewski, C. M., McMorrow, S. R., Yang, D., Nebel, M. B., Tunçgenç, B., Vidal, R., Marrus, N., Mostofsky, S. H. & Eggebrecht, A. T., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Evaluating the performance of a large field-of-view wearable diffuse optical tomography system during motion

    DeVore, H. E., Agato, A. S., Hamic, W. T., O’Sullivan, A. C., Hedlund, M. J., Rafferty, S., Svoboda, C. F., Trobaugh, J. W., Eggebrecht, A. T., Richter, E. J. & Culver, J. P., 2024, Neural Imaging and Sensing 2024. Luo, Q., Ding, J. & Fu, L. (eds.). SPIE, 128280B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12828).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Fundamental Effects of Array Density and Modulation Frequency on Image Quality of Diffuse Optical Tomography

    Fan, W., Trobaugh, J. W., Culver, J. P. & Eggebrecht, A. T., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Improving Normative Modeling for Multi-Modal Neuroimaging Data Using Mixture-of-Product-of-Experts Variational Autoencoders

    Kumar, S., Payne, P. & Sotiras, A., 2024, IEEE International Symposium on Biomedical Imaging, ISBI 2024 - Conference Proceedings. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations

  • Infant Mice Receiving Fractionated Whole-brain Radiation Exhibit Functional Network Disorganization as Adults

    Zhu, J., Seitzman, B. A., Reynoso, F. J., Mitchell, T. J., Bice, A. R., Padawer-Curry, J. A., Wang, X., Perkins, S. M. & Bauer, A. Q., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mapping Brain Function Underlying Coherent and Scrambled Biological Motion Processing in Autistic School-Age Children Using HD-DOT

    Yang, D., Svoboda, A. M., George, T. G., Wheelock, M., Schroeder, M. L., Rafferty, S., Sherafati, A., Culver, J. P. & Eggebrecht, A. T., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mapping Local and Global Interactions between Parvalbumin Inhibitory Neurons and Excitatory Neurons over the Cortex in Awake Mice

    Wang, X., Bice, A. R. & Bauer, A. Q., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • NeuroDOT: a Matlab and Python Toolbox for Optical Brain Mapping

    Speh, E., Thacker, Y., Segel, A., Marcus, D., Wheelock, M. D. & Eggebrecht, A. T., 2024, Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Neuromonitoring of Cerebral Oxygenation and Cortical Networks in Pediatric ECMO Patients Using High-Density Diffuse Optical Tomography

    McMorrow, S. R., George, T. G., Sobolewski, C. M., Yang, D., Park, S. M., King, K. T., Said, A. & Eggebrecht, A. T., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Psychedelic 5-HT2A Receptor Agonism Alters Neurovascular Coupling in Mice

    Padawer-Curry, J. A., Snyder, A. Z., Bice, A. R., Wang, X., Nicol, G. E., McCall, J. G., Siegel, J. S. & Bauer, A. Q., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Selection Bias from Data Processing in N3C

    N3C Consortium, 2024, Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024. Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. (Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Simultaneous Two-Photon and Thermal Imaging of Mouse Cortex Enables Optimization of Signal-to-Noise

    Chen, S., Banks, H., Bumstead, J., Bice, A., Gaines, S. & Culver, J., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Spatiotemporal Properties of Stimulus-evoked Responses in Mice Following Single Whisker Stimulation

    Schloss, K. H., Wang, X., Padawer-Curry, J. A., Bice, A. R. & Bauer, A. Q., 2024, Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Time of flight improves depth sampling while reducing data uncertainty in Diffuse Optical Tomography

    Zheng, B., Dale, R., Eggebrecht, A., O’Sullivan, T. & Dehghani, H., 2024, Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Training Materials and Documentation Methods in NeuroDOT, a Toolbox for Optical Brain Mapping

    Segel, A., Speh, E. & Eggebrecht, A., 2024, Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics. Optical Society of America, (Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2023

    5-HT2A Receptor Agonism Changes Neuronal Network Activity and Disrupts Neurovascular Coupling in Mice

    Padawer-Curry, J., Siegel, J. S., McCall, J. G., Nicol, G. E. & Bauer, A. Q., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BTu2B.3. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Abdominal CT pancreas segmentation using multi-scale convolution with aggregated transformations

    Yang, J., Marcus, D. S. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124651R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • A Generative-Discriminative Deep Learning Approach to Classify Radiology Reports based on the Presence of Follow Up Recommendations

    Xiao, P., Yu, X., Mintz, A., Wang, J., Mokkarala, M., Narra, V. R., Marcus, D. S., Bierhals, A. J. & Sotiras, A., 2023, Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications. Park, B. J. & Yoshida, H. (eds.). SPIE, 124690P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12469).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation

    Xue, B., Said, A. S., Xu, Z., Liu, H., Shah, N., Yang, H., Payne, P. & Lu, C., Aug 4 2023, KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 5360-5371 12 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    4 Scopus citations

  • Attention-Based CNN-BiLSTM for Sleep State Classification of Spatiotemporal Wide-Field Calcium Imaging Data

    Zhang, X., Landsness, E. C., Culver, J. P., Lee, J.-M. & Anastasio, M. A., 2023, Neural Imaging and Sensing 2023. Luo, Q., Ding, J. & Fu, L. (eds.). SPIE, 123650B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12365).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • A Whole Head Ultra-High Density Diffuse Optical Tomography System for Naturalistic and Resting State Functional Human Brain Mapping

    Fogarty, M., Rafferty, S. M., O’Sullivan, A. C., Svoboda, C. F., Markow, Z. E., Richter, E. J., George, T., King, K., Wilhelm, D., Tripathy, K., Trobaugh, J. W., Eggebrecht, A. T. & Culver, J. P., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BM2B.5. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Deep learning-based end-to-end scan-type classification, pre-processing, and segmentation of clinical neuro-oncology studies

    Chakrabarty, S., Abidi, S. A., Mousa, M., Mokkarala, M., Kelsey, M., LaMontagne, P., Sotiras, A. & Marcus, D. S., 2023, Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications. Park, B. J. & Yoshida, H. (eds.). SPIE, 124690N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12469).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Deep Learning Driven Light-Based Motor Mapping of Multiple Limb Movements in Mice Reveals Behaviorally Relevant Movements

    Khanal, N., Padawer-Curry, J., Schulte, K., Voss, T., Bice, A. R., Lee, J. M. & Bauer, A. Q., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BTu1B.5. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Detecting change points in neural population activity with contrastive metric learning

    Urzay, C., Ahad, N., Azabou, M., Schneider, A., Atamkuri, G., Hengen, K. B. & Dyer, E. L., 2023, 11th International IEEE/EMBS Conference on Neural Engineering, NER 2023 - Proceedings. IEEE Computer Society, (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Fiber-Based Speckle Contrast Optical Tomography for Neuroimaging in Humans: Simulation of High-Density vs. Sparse Arrays and In Vivo Human Measurements

    Lin, C. H. P., Fehner, W., Orukari, I. E., Frisk, L. K., Agato, A., Verma, M., O'Sullivan, A., Svoboda, C., Chetia, S., Eggebrecht, A. T., Durduran, T., Culver, J. P. & Trobaugh, J. W., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BTh2B.2. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High-density speckle contrast optical tomography system for in vivo imaging of deep tissue blood flow

    Beslija, F., Frisk, L. K., Verma, M., Lin, C. H. P., Patil, N., Chetia, S., Trobaugh, J. W., Culver, J. P. & Durduran, T., 2023, Diffuse Optical Spectroscopy and Imaging IX. Contini, D., Hoshi, Y. & O'Sullivan, T. D. (eds.). SPIE, 126280X. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12628).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High Performance Wearable Diffuse Optical Tomography with 2x2 Source-Detector Modules

    DeVore, H., Agato, A., Hedlund, M., Hamic, W., O’Sullivan, A., Svoboda, C., Trobaugh, J., Eggebrecht, A. T., Richter, E. T. & Culver, J. P., 2023, Optical Molecular Probes, Imaging and Drug Delivery, OMP 2023. Optical Society of America, JTu4B.21. (Optical Molecular Probes, Imaging and Drug Delivery, OMP 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High Performance Wearable Diffuse Optical Tomography with 2x2 Source-Detector Modules

    DeVore, H., Agato, A., Hedlund, M., Hamic, W., O’Sullivan, A., Svoboda, C., Trobaugh, J., Eggebrecht, A. T., Richter, E. T. & Culver, J. P., 2023, Bio-Optics: Design and Application, BODA 2023. Optical Society of America, (Bio-Optics: Design and Application, BODA 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High Performance Wearable Diffuse Optical Tomography with 2x2 Source-Detector Modules

    DeVore, H., Agato, A., Hedlund, M., Hamic, W., O’Sullivan, A., Svoboda, C., Trobaugh, J., Eggebrecht, A. T., Richter, E. T. & Culver, J. P., 2023, Novel Techniques in Microscopy, NTM 2023. Optical Society of America, (Novel Techniques in Microscopy, NTM 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High Performance Wearable Diffuse Optical Tomography with 2x2 Source-Detector Modules

    DeVore, H., Agato, A., Hedlund, M., Hamic, W., O’Sullivan, A., Svoboda, C., Trobaugh, J., Eggebrecht, A. T., Richter, E. T. & Culver, J. P., 2023, Optical Manipulation and Its Applications, OMA 2023. Optical Society of America, (Optical Manipulation and Its Applications, OMA 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High Performance Wearable Diffuse Optical Tomography with 2x2 Source-Detector Modules

    DeVore, H., Agato, A., Hedlund, M., Hamic, W., O’Sullivan, A., Svoboda, C., Trobaugh, J., Eggebrecht, A. T., Richter, E. T. & Culver, J. P., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, JTu4B.21. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High Performance Wearable Diffuse Optical Tomography with 2x2 Source-Detector Modules

    DeVore, H., Agato, A., Hedlund, M., Hamic, W., O'Sullivan, A., Svoboda, C., Trobaugh, J., Eggebrecht, A. T., Richter, E. T. & Culver, J. P., 2023, Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023. Optical Society of America, (Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Imaging of dendrites and sparse interneuronal networks with 3D random access microscopy

    Rózsa, B., Szadai, Z., Judák, L., Chiovini, B., Juhász, G., Ócsai, K., Pálfi, D., Mezriczky, Z., Szalay, G., Katona, G., Mihály, A., Szepesi, Á., Mucsi, Z., Roska, B., Pi, H. J., Chevy, Q., Albeanu, F. & Kepecs, A., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BW3B.6. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

    Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A. & Williams, A. E. & 116 others, Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Mapping adipose tissue in short-axis echocardiograms using spectral analysis

    Gillette, L., Dinh, V., Woodard, P. & Klingensmith, J., 2023, IUS 2023 - IEEE International Ultrasonics Symposium, Proceedings. IEEE Computer Society, (IEEE International Ultrasonics Symposium, IUS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Mapping Local and Global Interactions between Parvalbumin Inhibitory Neurons and Excitatory Neurons over the Cortex in Awake Mice

    Wang, X., Bice, A. R. & Bauer, A. Q., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BTu1B.4. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Measuring brain function during motor imitation with high-density diffuse optical tomography (HD-DOT)

    George, T. G., Yang, D., King, K. T., McMorrow, S. R., Sobolewski, C. M., Tunçgenç, B., Nebel, M. B., Marrus, N. M., Mostofsky, S. H. & Eggebrecht, A. T., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, JW2A.1. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review