Institute for Informatics, Data Science and Biostatistics (I2DB)

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  • 2025

    DGR-MIL: Exploring Diverse Global Representation in Multiple Instance Learning for Whole Slide Image Classification

    Zhu, W., Chen, X., Qiu, P., Sotiras, A., Razi, A. & Wang, Y., 2025, Computer Vision – ECCV 2024 - 18th European Conference, Proceedings. Leonardis, A., Ricci, E., Roth, S., Russakovsky, O., Sattler, T. & Varol, G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 333-351 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 15096 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Multimodal Variational Autoencoder: A Barycentric View

    Qiu, P., Zhu, W., Kumar, S., Chen, X., Yang, J., Sun, X., Razi, A., Wang, Y. & Sotiras, A., Apr 11 2025, Special Track on AI Alignment. Walsh, T., Shah, J. & Kolter, Z. (eds.). 19 ed. Association for the Advancement of Artificial Intelligence, p. 20060-20068 9 p. (Proceedings of the AAAI Conference on Artificial Intelligence; vol. 39, no. 19).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2024

    Big Data Decision-Making and Racial Disparities: A Case Study Among COVID-19 Inpatient Visits

    Haghighathoseini, A., Wojtusiak, J., Menon, N. M., Min, H., Frankenfeld, C., Leslie, T., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A., Zhou, A., Williams, A. E., Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A. & Amor, B. & 114 others, Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Brown, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Hayanga, J. W. A., Pincavitch, J., Clark, J., Harper, J. R., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Saltz, J., Loomba, J., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2024, Proceedings - 2024 IEEE International Conference on Big Data, BigData 2024. Ding, W., Lu, C.-T., Wang, F., Di, L., Wu, K., Huan, J., Nambiar, R., Li, J., Ilievski, F., Baeza-Yates, R. & Hu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 6452-6459 8 p. (Proceedings - 2024 IEEE International Conference on Big Data, BigData 2024).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Document-level Clinical Entity and Relation Extraction via Knowledge Base-Guided Generation

    Bhattarai, K., Oh, I. Y., Abrams, Z. B. & Lai, A. M., 2024, BioNLP 2024 - 23rd Meeting of the ACL Special Interest Group on Biomedical Natural Language Processing, Proceedings of the Workshop and Shared Tasks. Demner-Fushman, D., Ananiadou, S., Miwa, M., Roberts, K. & Tsujii, J. (eds.). Association for Computational Linguistics (ACL), p. 318-327 10 p. (BioNLP 2024 - 23rd Meeting of the ACL Special Interest Group on Biomedical Natural Language Processing, Proceedings of the Workshop and Shared Tasks).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Evaluating and Improvi g the Performance and Racial Fairness of Algori ims for GFR Estimation

    Zhang, L., Kim, T., Richter, L. R. & Hripcsak, G., 2024, Proceedings - 2024 IEEE 1st International Conference on Artificial Intelligence for Medicine, Health and Care, AIMHC 2024. Institute of Electrical and Electronics Engineers Inc., p. 251-257 7 p. (Proceedings - 2024 IEEE 1st International Conference on Artificial Intelligence for Medicine, Health and Care, AIMHC 2024).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Improving Normative Modeling for Multi-Modal Neuroimaging Data Using Mixture-of-Product-of-Experts Variational Autoencoders

    Kumar, S., Payne, P. & Sotiras, A., 2024, IEEE International Symposium on Biomedical Imaging, ISBI 2024 - Conference Proceedings. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Selection Bias from Data Processing in N3C

    N3C Consortium, 2024, Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024. Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. (Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • SelfReg-UNet: Self-Regularized UNet for Medical Image Segmentation

    Zhu, W., Chen, X., Qiu, P., Farazi, M., Sotiras, A., Razi, A. & Wang, Y., 2024, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024 - 27th International Conference, Proceedings. Linguraru, M. G., Dou, Q., Feragen, A., Giannarou, S., Glocker, B., Lekadir, K. & Schnabel, J. A. (eds.). Springer Science and Business Media Deutschland GmbH, p. 601-611 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 15008 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Understanding the Technical Implementation of a Clinical Decision Support SmartApp: A Qualitative Analysis

    Hobensack, M., Withall, J., Cato, K., Dykes, P., Lowenthal, G., Cho, S., Ivory, C., Yen, P. Y. & Rossetti, S., Jan 25 2024, MEDINFO 2023 - The Future is Accessible: Proceedings of the 19th World Congress on Medical and Health Informatics. Bichel-Findlay, J., Otero, P., Scott, P. & Huesing, E. (eds.). IOS Press BV, p. 1382-1383 2 p. (Studies in Health Technology and Informatics; vol. 310).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2023

    Abdominal CT pancreas segmentation using multi-scale convolution with aggregated transformations

    Yang, J., Marcus, D. S. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124651R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • A Generative-Discriminative Deep Learning Approach to Classify Radiology Reports based on the Presence of Follow Up Recommendations

    Xiao, P., Yu, X., Mintz, A., Wang, J., Mokkarala, M., Narra, V. R., Marcus, D. S., Bierhals, A. J. & Sotiras, A., 2023, Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications. Park, B. J. & Yoshida, H. (eds.). SPIE, 124690P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12469).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation

    Xue, B., Said, A. S., Xu, Z., Liu, H., Shah, N., Yang, H., Payne, P. & Lu, C., Aug 4 2023, KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 5360-5371 12 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    4 Scopus citations

  • Deep learning-based end-to-end scan-type classification, pre-processing, and segmentation of clinical neuro-oncology studies

    Chakrabarty, S., Abidi, S. A., Mousa, M., Mokkarala, M., Kelsey, M., LaMontagne, P., Sotiras, A. & Marcus, D. S., 2023, Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications. Park, B. J. & Yoshida, H. (eds.). SPIE, 124690N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12469).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Detecting Mental Disorders with Wearables: A Large Cohort Study

    Dai, R., Kannampallil, T., Kim, S., Thornton, V., Bierut, L. & Lu, C., May 9 2023, Proceedings - 8th ACM/IEEE Conference on Internet of Things Design and Implementation, IoTDI 2023. Association for Computing Machinery, p. 39-51 13 p. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

    Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A. & Williams, A. E. & 116 others, Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Morphological Versus Functional Network Organization: A Comparison Between Structural Covariance Networks and Probabilistic Functional Modes

    Lenzini, P., Earnest, T., Min Ha, S., Bani, A., Sotiras, A. & Bijsterbosch, J., 2023, Machine Learning in Clinical Neuroimaging - 6th International Workshop, MLCN 2023, Held in Conjunction with MICCAI 2023, Proceedings. Abdulkadir, A., Bathula, D. R., Dvornek, N. C., Govindarajan, S. T., Habes, M., Kumar, V., Leonardsen, E., Wolfers, T. & Xiao, Y. (eds.). Springer Science and Business Media Deutschland GmbH, p. 163-172 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14312 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Non-invasive classification of IDH mutation status of gliomas from multi-modal MRI using a 3D convolutional neural network

    Chakrabarty, S., LaMontagne, P., Shimony, J., Marcus, D. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124650W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Normative Modeling using Multimodal Variational Autoencoders to Identify Abnormal Brain Volume Deviations in Alzheimer's Disease

    Kumar, S., Payne, P. R. O. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 1246503. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • QCResUNet: Joint Subject-Level and Voxel-Level Prediction of Segmentation Quality

    Qiu, P., Chakrabarty, S., Nguyen, P., Ghosh, S. S. & Sotiras, A., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 173-182 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14223 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Scalable NMF via linearly optimized data compression

    Ha, S. M., Bani, A. & Sotiras, A., 2023, Medical Imaging 2023: Image Processing. Colliot, O. & Isgum, I. (eds.). SPIE, 124640V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12464).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Scalable Orthonormal Projective NMF via Diversified Stochastic Optimization

    Bani, A., Ha, S. M., Xiao, P., Earnest, T., Lee, J. & Sotiras, A., 2023, Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, Proceedings. Frangi, A., de Bruijne, M., Wassermann, D. & Navab, N. (eds.). Springer Science and Business Media Deutschland GmbH, p. 497-508 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13939 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Siam-VAE: A hybrid deep learning based anomaly detection framework for automated quality control of head CT scans

    Ghosh, S. S., Dhar, R., Marcus, D. S. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124650X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2022

    HiPAL: A Deep Framework for Physician Burnout Prediction Using Activity Logs in Electronic Health Records

    Liu, H., Lou, S. S., Warner, B. C., Harford, D. R., Kannampallil, T. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 3377-3387 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • How Powerful are K-hop Message Passing Graph Neural Networks

    Feng, J., Chen, Y., Li, F., Sarkar, A. & Zhang, M., 2022, Advances in Neural Information Processing Systems 35 - 36th Conference on Neural Information Processing Systems, NeurIPS 2022. Koyejo, S., Mohamed, S., Agarwal, A., Belgrave, D., Cho, K. & Oh, A. (eds.). Neural information processing systems foundation, (Advances in Neural Information Processing Systems; vol. 35).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    75 Scopus citations

  • Multi-scale Multi-structure Siamese Network (MMSNet) for Primary Open-Angle Glaucoma Prediction

    Lin, M., Liu, L., Gorden, M., Kass, M., Tassel, S. V., Wang, F. & Peng, Y., 2022, Machine Learning in Medical Imaging - 13th International Workshop, MLMI 2022, Held in Conjunction with MICCAI 2022, Proceedings. Lian, C., Cao, X., Rekik, I., Xu, X. & Cui, Z. (eds.). Springer Science and Business Media Deutschland GmbH, p. 436-445 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13583 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Perioperative Predictions with Interpretable Latent Representation

    Xue, B., Jiao, Y., Kannampallil, T., Fritz, B., King, C., Abraham, J., Avidan, M. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 4268-4278 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    9 Scopus citations

  • Predicting Intraoperative Hypoxemia with Hybrid Inference Sequence Autoencoder Networks

    Liu, H., Montana, M., Li, D., Renfroe, C., Kannampallil, T. & Lu, C., Oct 17 2022, CIKM 2022 - Proceedings of the 31st ACM International Conference on Information and Knowledge Management. Association for Computing Machinery, p. 1269-1278 10 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Self-explaining Hierarchical Model for Intraoperative Time Series

    Li, D., Xue, B., King, C., Fritz, B., Avidan, M., Abraham, J. & Lu, C., 2022, Proceedings - 22nd IEEE International Conference on Data Mining, ICDM 2022. Zhu, X., Ranka, S., Thai, M. T., Washio, T. & Wu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1041-1046 6 p. (Proceedings - IEEE International Conference on Data Mining, ICDM; vol. 2022-November).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Self-explaining neural network with concept-based explanations for ICU mortality prediction

    Kumar, S., Yu, S. C., Kannampallil, T., Abrams, Z., Michelson, A. & Payne, P. R. O., Aug 7 2022, Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022. Association for Computing Machinery, Inc, 8. (Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    6 Scopus citations

  • Stakeholder Mapping on the Development of Digital Health Interventions for Self-Management Among Patients with Chronic Obstructive Pulmonary Disease in China

    An, Q., Kelley, M. M. & Yen, P. Y., Jun 6 2022, MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation - Proceedings of the 18th World Congress on Medical and Health Informatics. Otero, P., Scott, P., Martin, S. Z. & Huesing, E. (eds.). IOS Press BV, p. 1106-1107 2 p. (Studies in Health Technology and Informatics; vol. 290).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations
  • 2021

    BrainTumorNet: Multi-task learning for joint segmentation of high-grade glioma and brain metastases from MR images

    Chakrabarty, S., Sotiras, A., Milchenko, M., Lamontagne, P., Abraham, C., Robinson, C. & Marcus, D., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 115960K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • RespWatch: Robust Measurement of Respiratory Rate on Smartwatches with Photoplethysmography

    Dai, R., Lu, C., Avidan, M. & Kannampallil, T., May 18 2021, IoTDI 2021 - Proceedings of the 2021 International Conference on Internet-of-Things Design and Implementation. Association for Computing Machinery, Inc, p. 208-220 13 p. (IoTDI 2021 - Proceedings of the 2021 International Conference on Internet-of-Things Design and Implementation).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    18 Scopus citations

  • Transformer-based Multi-target Regression on Electronic Health Records for Primordial Prevention of Cardiovascular Disease

    Poulain, R., Gupta, M., Foraker, R. & Beheshti, R., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 726-731 6 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Using Experience-Based Co-design to Develop mHealth App for Digital Pulmonary Rehabilitation Management of Patients with Chronic Obstructive Pulmonary Disease (COPD)

    An, Q., Kelley, M. M. & Yen, P. Y., 2021, HCI International 2021 - Late Breaking Posters - 23rd HCI International Conference, HCII 2021, Proceedings. Stephanidis, C., Antona, M. & Ntoa, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 125-133 9 p. (Communications in Computer and Information Science; vol. 1499 CCIS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2020

    Integrative radiomic analysis for pre-surgical prognostic stratification of glioblastoma patients: from advanced to basic MRI protocols

    Bakas, S., Shukla, G., Akbari, H., Erus, G., Sotiras, A., Rathore, S., Sako, C., Ha, S. M., Rozycki, M., Singh, A., Shinohara, R., Bilello, M. & Davatzikos, C., 2020, Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 113151S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11315).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • MAGIC: Multi-scale Heterogeneity Analysis and Clustering for Brain Diseases

    Wen, J., Varol, E., Chand, G., Sotiras, A. & Davatzikos, C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 678-687 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12267 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • The cancer imaging phenomics toolkit (CaPTk): Technical overview

    Pati, S., Singh, A., Rathore, S., Gastounioti, A., Bergman, M., Ngo, P., Ha, S. M., Bounias, D., Minock, J., Murphy, G., Li, H., Bhattarai, A., Wolf, A., Sridaran, P., Kalarot, R., Akbari, H., Sotiras, A., Thakur, S. P., Verma, R. & Shinohara, R. T. & 5 others, Yushkevich, P., Fan, Y., Kontos, D., Davatzikos, C. & Bakas, S., 2020, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 5th International Workshop, BrainLes 2019, Held in Conjunction with MICCAI 2019, Revised Selected Papers. Crimi, A. & Bakas, S. (eds.). Springer, p. 380-394 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11993 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    51 Scopus citations
  • 2018

    Echo: A large display interactive visualization of ICU data for effective care handoffs

    Thomas, M. M., Kannampallil, T., Abraham, J. & Marai, G. E., Jun 15 2018, 2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017. Institute of Electrical and Electronics Engineers Inc., p. 47-54 8 p. (2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    14 Scopus citations

  • Effect of handoff training on resident communication quality: An observational study

    Abraham, J., Kannampallil, T. G., Ward, C. E., Bogan, C. & Hyderi, A., 2018, Proceedings of the 51st Annual Hawaii International Conference on System Sciences, HICSS 2018. Bui, T. X. (ed.). IEEE Computer Society, p. 2926-2935 10 p. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 2018-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Generative discriminative models for multivariate inference and statistical mapping in medical imaging

    Varol, E., Sotiras, A., Zeng, K. & Davatzikos, C., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Davatzikos, C., Fichtinger, G., Alberola-López, C. & Schnabel, J. A. (eds.). Springer Verlag, p. 540-548 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11072 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    9 Scopus citations

  • Jointly Embedding Entities and Text with Distant Supervision

    Newman-Griffis, D., Lai, A. M. & Fosler-Lussier, E., 2018, ACL 2018 - Representation Learning for NLP, Proceedings of the 3rd Workshop. Association for Computational Linguistics (ACL), p. 195-206 12 p. (Proceedings of the Annual Meeting of the Association for Computational Linguistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    20 Scopus citations

  • QoE Tuning for remote access of interactive volume visualization applications

    Jonesi, S., Adams, J., Valluripally, S., Calyam, P., Hittle, B. & Lai, A., Nov 28 2018, 2018 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2018. Institute of Electrical and Electronics Engineers Inc., 8551560. (2018 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Regionally discriminative multivariate statistical mapping

    Varol, E., Sotiras, A. & Davatzikos, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1560-1563 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Statistically-constrained robust diffeomorphic registration

    Zeng, K., Sotiras, A. & Davatzikos, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1083-1087 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2017

    Inductive identification of functional status information and establishing a gold standard corpus: A case study on the Mobility domain

    Thieu, T., Camacho, J., Ho, P. S., Porcino, J., Ding, M., Nelson, L., Rasch, E., Zhou, C., Chan, L., Brandt, D., Newman-Griffis, D., Yuan, A. & Lai, A. M., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2319-2321 3 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    7 Scopus citations

  • Insights into Analogy Completion from the Biomedical Domain

    Newman-Griffis, D., Lai, A. M. & Fosler-Lussier, E., 2017, BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop. Association for Computational Linguistics (ACL), p. 19-28 10 p. (BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    13 Scopus citations

  • Visualizing article similarities via sparsified article network and map projection for systematic reviews

    Ji, X., Machiraju, R., Ritter, A. & Yen, P. Y., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Gundlapalli, A. V., Marie-Christine, J. & Dongsheng, Z. (eds.). IOS Press BV, p. 422-426 5 p. (Studies in Health Technology and Informatics; vol. 245).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 2016

    Communication Patterns in a Collaborative Medication Scheduling Task among Older Adults

    Kannampallil, T. G., Morrow, D. G., Fu, W. T., Raquel, L. & Muriset, A., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Fu, W.-T., Zheng, K., Hodges, L., Stiglic, G. & Blandford, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 367-374 8 p. 7776385. (Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • DrugMoaMiner: A computational tool for mechanism of action discovery and personalized drug sensitivity prediction

    Li, F., Wang, L., Kong, R., Sheng, J., Cao, H., Mancuso, J., Xia, X., Stephan, C. & Wong, S. T. C., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 368-371 4 p. 7455911. (3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • GLISTRboost: Combining multimodal MRI segmentation, registration, and biophysical tumor growth modeling with gradient boosting machines for glioma segmentation

    Bakas, S., Zeng, K., Sotiras, A., Rathore, S., Akbari, H., Gaonkar, B., Rozycki, M., Pati, S. & Davatzikos, C., Jan 1 2016, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 1st International Workshop, Brainles 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Reyes, M., Crimi, A., Maier, O., Maier, O., Handels, H. & Menze, B. (eds.). Springer Verlag, p. 144-155 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9556).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    83 Scopus citations