Institute for Informatics, Data Science and Biostatistics (I2DB)

2024

Evaluating and Improvi g the Performance and Racial Fairness of Algori ims for GFR Estimation

Zhang, L., Kim, T., Richter, L. R. & Hripcsak, G., 2024, Proceedings - 2024 IEEE 1st International Conference on Artificial Intelligence for Medicine, Health and Care, AIMHC 2024. Institute of Electrical and Electronics Engineers Inc., p. 251-257 7 p. (Proceedings - 2024 IEEE 1st International Conference on Artificial Intelligence for Medicine, Health and Care, AIMHC 2024).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Understanding the Technical Implementation of a Clinical Decision Support SmartApp: A Qualitative Analysis

Hobensack, M., Withall, J., Cato, K., Dykes, P., Lowenthal, G., Cho, S., Ivory, C., Yen, P. Y. & Rossetti, S., Jan 25 2024, MEDINFO 2023 - The Future is Accessible: Proceedings of the 19th World Congress on Medical and Health Informatics. Bichel-Findlay, J., Otero, P., Scott, P. & Huesing, E. (eds.). IOS Press BV, p. 1382-1383 2 p. (Studies in Health Technology and Informatics; vol. 310).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2023

Abdominal CT pancreas segmentation using multi-scale convolution with aggregated transformations

Yang, J., Marcus, D. S. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124651R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

A Generative-Discriminative Deep Learning Approach to Classify Radiology Reports based on the Presence of Follow Up Recommendations

Xiao, P., Yu, X., Mintz, A., Wang, J., Mokkarala, M., Narra, V. R., Marcus, D. S., Bierhals, A. J. & Sotiras, A., 2023, Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications. Park, B. J. & Yoshida, H. (eds.). SPIE, 124690P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12469).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation

Xue, B., Said, A. S., Xu, Z., Liu, H., Shah, N., Yang, H., Payne, P. & Lu, C., Aug 6 2023, KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 5360-5371 12 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Deep learning-based end-to-end scan-type classification, pre-processing, and segmentation of clinical neuro-oncology studies

Chakrabarty, S., Abidi, S. A., Mousa, M., Mokkarala, M., Kelsey, M., LaMontagne, P., Sotiras, A. & Marcus, D. S., 2023, Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications. Park, B. J. & Yoshida, H. (eds.). SPIE, 124690N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12469).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Detecting Mental Disorders with Wearables: A Large Cohort Study

Dai, R., Kannampallil, T., Kim, S., Thornton, V., Bierut, L. & Lu, C., May 9 2023, Proceedings - 8th ACM/IEEE Conference on Internet of Things Design and Implementation, IoTDI 2023. Association for Computing Machinery, p. 39-51 13 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

3 Scopus citations

Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A. & Williams, A. E. & 116 others, Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Morphological Versus Functional Network Organization: A Comparison Between Structural Covariance Networks and Probabilistic Functional Modes

Lenzini, P., Earnest, T., Min Ha, S., Bani, A., Sotiras, A. & Bijsterbosch, J., 2023, Machine Learning in Clinical Neuroimaging - 6th International Workshop, MLCN 2023, Held in Conjunction with MICCAI 2023, Proceedings. Abdulkadir, A., Bathula, D. R., Dvornek, N. C., Govindarajan, S. T., Habes, M., Kumar, V., Leonardsen, E., Wolfers, T. & Xiao, Y. (eds.). Springer Science and Business Media Deutschland GmbH, p. 163-172 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14312 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Non-invasive classification of IDH mutation status of gliomas from multi-modal MRI using a 3D convolutional neural network

Chakrabarty, S., LaMontagne, P., Shimony, J., Marcus, D. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124650W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Normative Modeling using Multimodal Variational Autoencoders to Identify Abnormal Brain Volume Deviations in Alzheimer's Disease

Kumar, S., Payne, P. R. O. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 1246503. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2 Scopus citations

QCResUNet: Joint Subject-Level and Voxel-Level Prediction of Segmentation Quality

Qiu, P., Chakrabarty, S., Nguyen, P., Ghosh, S. S. & Sotiras, A., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 173-182 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14223 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Scalable NMF via linearly optimized data compression

Ha, S. M., Bani, A. & Sotiras, A., 2023, Medical Imaging 2023: Image Processing. Colliot, O. & Isgum, I. (eds.). SPIE, 124640V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12464).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Scalable Orthonormal Projective NMF via Diversified Stochastic Optimization

Bani, A., Ha, S. M., Xiao, P., Earnest, T., Lee, J. & Sotiras, A., 2023, Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, Proceedings. Frangi, A., de Bruijne, M., Wassermann, D. & Navab, N. (eds.). Springer Science and Business Media Deutschland GmbH, p. 497-508 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13939 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

1 Scopus citations

Siam-VAE: A hybrid deep learning based anomaly detection framework for automated quality control of head CT scans

Ghosh, S. S., Dhar, R., Marcus, D. S. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124650X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2022

HiPAL: A Deep Framework for Physician Burnout Prediction Using Activity Logs in Electronic Health Records

Liu, H., Lou, S. S., Warner, B. C., Harford, D. R., Kannampallil, T. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 3377-3387 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

5 Scopus citations

How Powerful are K-hop Message Passing Graph Neural Networks

Feng, J., Chen, Y., Li, F., Sarkar, A. & Zhang, M., 2022, Advances in Neural Information Processing Systems 35 - 36th Conference on Neural Information Processing Systems, NeurIPS 2022. Koyejo, S., Mohamed, S., Agarwal, A., Belgrave, D., Cho, K. & Oh, A. (eds.). Neural information processing systems foundation, (Advances in Neural Information Processing Systems; vol. 35).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

44 Scopus citations

Multi-scale Multi-structure Siamese Network (MMSNet) for Primary Open-Angle Glaucoma Prediction

Lin, M., Liu, L., Gorden, M., Kass, M., Tassel, S. V., Wang, F. & Peng, Y., 2022, Machine Learning in Medical Imaging - 13th International Workshop, MLMI 2022, Held in Conjunction with MICCAI 2022, Proceedings. Lian, C., Cao, X., Rekik, I., Xu, X. & Cui, Z. (eds.). Springer Science and Business Media Deutschland GmbH, p. 436-445 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13583 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2 Scopus citations

Perioperative Predictions with Interpretable Latent Representation

Xue, B., Jiao, Y., Kannampallil, T., Fritz, B., King, C., Abraham, J., Avidan, M. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 4268-4278 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

5 Scopus citations

Predicting Intraoperative Hypoxemia with Hybrid Inference Sequence Autoencoder Networks

Liu, H., Montana, M., Li, D., Renfroe, C., Kannampallil, T. & Lu, C., Oct 17 2022, CIKM 2022 - Proceedings of the 31st ACM International Conference on Information and Knowledge Management. Association for Computing Machinery, p. 1269-1278 10 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2 Scopus citations

Self-explaining Hierarchical Model for Intraoperative Time Series

Li, D., Xue, B., King, C., Fritz, B., Avidan, M., Abraham, J. & Lu, C., 2022, Proceedings - 22nd IEEE International Conference on Data Mining, ICDM 2022. Zhu, X., Ranka, S., Thai, M. T., Washio, T. & Wu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1041-1046 6 p. (Proceedings - IEEE International Conference on Data Mining, ICDM; vol. 2022-November).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Self-explaining neural network with concept-based explanations for ICU mortality prediction

Kumar, S., Yu, S. C., Kannampallil, T., Abrams, Z., Michelson, A. & Payne, P. R. O., Aug 7 2022, Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022. Association for Computing Machinery, Inc, 8. (Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

4 Scopus citations

Stakeholder Mapping on the Development of Digital Health Interventions for Self-Management Among Patients with Chronic Obstructive Pulmonary Disease in China

An, Q., Kelley, M. M. & Yen, P. Y., Jun 6 2022, MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation - Proceedings of the 18th World Congress on Medical and Health Informatics. Otero, P., Scott, P., Martin, S. Z. & Huesing, E. (eds.). IOS Press BV, p. 1106-1107 2 p. (Studies in Health Technology and Informatics; vol. 290).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

1 Scopus citations

2021

BrainTumorNet: Multi-task learning for joint segmentation of high-grade glioma and brain metastases from MR images

Chakrabarty, S., Sotiras, A., Milchenko, M., Lamontagne, P., Abraham, C., Robinson, C. & Marcus, D., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 115960K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

RespWatch: Robust Measurement of Respiratory Rate on Smartwatches with Photoplethysmography

Dai, R., Lu, C., Avidan, M. & Kannampallil, T., May 18 2021, IoTDI 2021 - Proceedings of the 2021 International Conference on Internet-of-Things Design and Implementation. Association for Computing Machinery, Inc, p. 208-220 13 p. (IoTDI 2021 - Proceedings of the 2021 International Conference on Internet-of-Things Design and Implementation).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

17 Scopus citations

Transformer-based Multi-target Regression on Electronic Health Records for Primordial Prevention of Cardiovascular Disease

Poulain, R., Gupta, M., Foraker, R. & Beheshti, R., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 726-731 6 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

7 Scopus citations

Using Experience-Based Co-design to Develop mHealth App for Digital Pulmonary Rehabilitation Management of Patients with Chronic Obstructive Pulmonary Disease (COPD)

An, Q., Kelley, M. M. & Yen, P. Y., 2021, HCI International 2021 - Late Breaking Posters - 23rd HCI International Conference, HCII 2021, Proceedings. Stephanidis, C., Antona, M. & Ntoa, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 125-133 9 p. (Communications in Computer and Information Science; vol. 1499 CCIS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

2020

Integrative radiomic analysis for pre-surgical prognostic stratification of glioblastoma patients: from advanced to basic MRI protocols

Bakas, S., Shukla, G., Akbari, H., Erus, G., Sotiras, A., Rathore, S., Sako, C., Ha, S. M., Rozycki, M., Singh, A., Shinohara, R., Bilello, M. & Davatzikos, C., 2020, Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 113151S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11315).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

MAGIC: Multi-scale Heterogeneity Analysis and Clustering for Brain Diseases

Wen, J., Varol, E., Chand, G., Sotiras, A. & Davatzikos, C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 678-687 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12267 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

The cancer imaging phenomics toolkit (CaPTk): Technical overview

Pati, S., Singh, A., Rathore, S., Gastounioti, A., Bergman, M., Ngo, P., Ha, S. M., Bounias, D., Minock, J., Murphy, G., Li, H., Bhattarai, A., Wolf, A., Sridaran, P., Kalarot, R., Akbari, H., Sotiras, A., Thakur, S. P., Verma, R. & Shinohara, R. T. & 5 others, Yushkevich, P., Fan, Y., Kontos, D., Davatzikos, C. & Bakas, S., 2020, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 5th International Workshop, BrainLes 2019, Held in Conjunction with MICCAI 2019, Revised Selected Papers. Crimi, A. & Bakas, S. (eds.). Springer, p. 380-394 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11993 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

40 Scopus citations

2018

Echo: A large display interactive visualization of ICU data for effective care handoffs

Thomas, M. M., Kannampallil, T., Abraham, J. & Marai, G. E., Jun 15 2018, 2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017. Institute of Electrical and Electronics Engineers Inc., p. 47-54 8 p. (2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

14 Scopus citations

Effect of handoff training on resident communication quality: An observational study

Abraham, J., Kannampallil, T. G., Ward, C. E., Bogan, C. & Hyderi, A., 2018, Proceedings of the 51st Annual Hawaii International Conference on System Sciences, HICSS 2018. Bui, T. X. (ed.). IEEE Computer Society, p. 2926-2935 10 p. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

Generative discriminative models for multivariate inference and statistical mapping in medical imaging

Varol, E., Sotiras, A., Zeng, K. & Davatzikos, C., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Davatzikos, C., Fichtinger, G., Alberola-López, C. & Schnabel, J. A. (eds.). Springer Verlag, p. 540-548 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11072 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

7 Scopus citations

Jointly Embedding Entities and Text with Distant Supervision

Newman-Griffis, D., Lai, A. M. & Fosler-Lussier, E., 2018, ACL 2018 - Representation Learning for NLP, Proceedings of the 3rd Workshop. Association for Computational Linguistics (ACL), p. 195-206 12 p. (Proceedings of the Annual Meeting of the Association for Computational Linguistics).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

20 Scopus citations

QoE Tuning for remote access of interactive volume visualization applications

Jonesi, S., Adams, J., Valluripally, S., Calyam, P., Hittle, B. & Lai, A., Nov 28 2018, 2018 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2018. Institute of Electrical and Electronics Engineers Inc., 8551560. (2018 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Regionally discriminative multivariate statistical mapping

Varol, E., Sotiras, A. & Davatzikos, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1560-1563 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Statistically-constrained robust diffeomorphic registration

Zeng, K., Sotiras, A. & Davatzikos, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1083-1087 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2017

Inductive identification of functional status information and establishing a gold standard corpus: A case study on the Mobility domain

Thieu, T., Camacho, J., Ho, P. S., Porcino, J., Ding, M., Nelson, L., Rasch, E., Zhou, C., Chan, L., Brandt, D., Newman-Griffis, D., Yuan, A. & Lai, A. M., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2319-2321 3 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

7 Scopus citations

Insights into Analogy Completion from the Biomedical Domain

Newman-Griffis, D., Lai, A. M. & Fosler-Lussier, E., 2017, BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop. Association for Computational Linguistics (ACL), p. 19-28 10 p. (BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

12 Scopus citations

Visualizing article similarities via sparsified article network and map projection for systematic reviews

Ji, X., Machiraju, R., Ritter, A. & Yen, P. Y., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Gundlapalli, A. V., Marie-Christine, J. & Dongsheng, Z. (eds.). IOS Press BV, p. 422-426 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

4 Scopus citations

2016

Communication Patterns in a Collaborative Medication Scheduling Task among Older Adults

Kannampallil, T. G., Morrow, D. G., Fu, W. T., Raquel, L. & Muriset, A., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Fu, W.-T., Zheng, K., Hodges, L., Stiglic, G. & Blandford, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 367-374 8 p. 7776385. (Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

DrugMoaMiner: A computational tool for mechanism of action discovery and personalized drug sensitivity prediction

Li, F., Wang, L., Kong, R., Sheng, J., Cao, H., Mancuso, J., Xia, X., Stephan, C. & Wong, S. T. C., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 368-371 4 p. 7455911. (3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

4 Scopus citations

GLISTRboost: Combining multimodal MRI segmentation, registration, and biophysical tumor growth modeling with gradient boosting machines for glioma segmentation

Bakas, S., Zeng, K., Sotiras, A., Rathore, S., Akbari, H., Gaonkar, B., Rozycki, M., Pati, S. & Davatzikos, C., Jan 1 2016, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 1st International Workshop, Brainles 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Reyes, M., Crimi, A., Maier, O., Maier, O., Handels, H. & Menze, B. (eds.). Springer Verlag, p. 144-155 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9556).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

81 Scopus citations

Identification, characterization, and grounding of gradable terms in clinical text

Shivade, C., De Marneffe, M. C., Fosler-Lussier, E. & Lai, A. M., 2016, BioNLP 2016 - Proceedings of the 15th Workshop on Biomedical Natural Language Processing. Cohen, K. B., Demner-Fushman, D., Ananiadou, S. & Tsujii, J.-I. (eds.). Association for Computational Linguistics (ACL), p. 17-26 10 p. (BioNLP 2016 - Proceedings of the 15th Workshop on Biomedical Natural Language Processing).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

Segmentation of gliomas in pre-operative and post-operative multimodal magnetic resonance imaging volumes based on a hybrid generative-discriminative framework

Zeng, K., Bakas, S., Sotiras, A., Akbari, H., Rozycki, M., Rathore, S., Pati, S. & Davatzikos, C., 2016, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Second International Workshop, BrainLes 2016, with the Challenges on BRATS, ISLES and mTOP 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Menze, B., Reyes, M., Crimi, A., Maier, O., Winzeck, S. & Handels, H. (eds.). Springer Verlag, p. 184-194 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10154 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

26 Scopus citations

Structured outlier detection in neuroimaging studies with minimal convex polytopes

Varol, E., Sotiras, A. & Davatzikos, C., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Ourselin, S., Joskowicz, L., Sabuncu, M. R., Wells, W. & Unal, G. (eds.). Springer Verlag, p. 300-307 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

1 Scopus citations

2015

A Metadata based Knowledge Discovery Methodology for Seeding Translational Research

Kothari, C. R. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1071 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma

Regan, K., Raje, S., Saravanamuthu, C. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 663-667 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Corpus-based discovery of semantic intensity scales

Shivade, C., De Marneffe, M. C., Fosler-Lussier, E. & Lai, A. M., 2015, NAACL HLT 2015 - 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference. Association for Computational Linguistics (ACL), p. 483-493 11 p. (NAACL HLT 2015 - 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

13 Scopus citations

Domain Analysis of Integrated Data to Reduce Cost Associated with Liver Disease

Motiwala, T., Kite, B., Regan, K., Gascon, G. M. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 414-418 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Institute for Informatics, Data Science and Biostatistics (I2DB)

Research output

Search results