Institute for Informatics, Data Science and Biostatistics

Research output

Research output per year 1968 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 2633 Article
• 107 Conference contribution
• 99 Review article
• 49 Comment/debate
• 127 More
  • 43 Chapter
  • 37 Letter
  • 24 Editorial
  • 14 Conference article
  • 4 Foreword/postscript
  • 4 Paper
  • 1 Book

Research output per year

Research output per year

Search results

• 2023

  Detecting Mental Disorders with Wearables: A Large Cohort Study

  Dai, R., Kannampallil, T., Kim, S., Thornton, V., Bierut, L. & Lu, C., May 9 2023, Proceedings - 8th ACM/IEEE Conference on Internet of Things Design and Implementation, IoTDI 2023. Association for Computing Machinery, p. 39-51 13 p. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Health 100%
  • Machine learning 66%
  • Convolutional neural networks 41%
  • Education 38%

• Scalable NMF via linearly optimized data compression

  Ha, S. M., Bani, A. & Sotiras, A., 2023, Medical Imaging 2023: Image Processing. Colliot, O. & Isgum, I. (eds.). SPIE, 124640V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12464).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Data Compression 100%
  • data compression 86%
  • Data compression 67%
  • Neuroimaging 56%
  • factorization 54%
• 2022

  HiPAL: A Deep Framework for Physician Burnout Prediction Using Activity Logs in Electronic Health Records

  Liu, H., Lou, S. S., Warner, B. C., Harford, D. R., Kannampallil, T. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 3377-3387 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Health 100%
  • Public health 53%
  • Deep learning 40%
  • Experiments 16%
  2 Scopus citations

• Perioperative Predictions with Interpretable Latent Representation

  Xue, B., Jiao, Y., Kannampallil, T., Fritz, B., King, C., Abraham, J., Avidan, M. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 4268-4278 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Intensive care units 100%
  • Surgery 76%
  • Machine learning 55%
  • Decision making 54%
  • Costs 28%
  1 Scopus citations

• Predicting Intraoperative Hypoxemia with Hybrid Inference Sequence Autoencoder Networks

  Liu, H., Montana, M., Li, D., Renfroe, C., Kannampallil, T. & Lu, C., Oct 17 2022, CIKM 2022 - Proceedings of the 31st ACM International Conference on Information and Knowledge Management. Association for Computing Machinery, p. 1269-1278 10 p. (International Conference on Information and Knowledge Management, Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Inference 100%
  • Prediction 74%
  • Surgery 56%
  • Clinical Decision Making 45%
  • Global Dynamics 40%

• Self-explaining Hierarchical Model for Intraoperative Time Series

  Li, D., Xue, B., King, C., Fritz, B., Avidan, M., Abraham, J. & Lu, C., 2022, Proceedings - 22nd IEEE International Conference on Data Mining, ICDM 2022. Zhu, X., Ranka, S., Thai, M. T., Washio, T. & Wu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1041-1046 6 p. (Proceedings - IEEE International Conference on Data Mining, ICDM; vol. 2022-November).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Time series 100%
  • Transparency 39%
  • Intensive care units 25%
  • Large dataset 20%
  • Surgery 19%

• Self-explaining neural network with concept-based explanations for ICU mortality prediction

  Kumar, S., Yu, S. C., Kannampallil, T., Abrams, Z., Michelson, A. & Payne, P. R. O., Aug 7 2022, Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022. Association for Computing Machinery, Inc, 8. (Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Deep Learning 100%
  • Intensive care units 96%
  • Neural networks 43%
  • Deep learning 43%
  • Mortality 36%

• Stakeholder Mapping on the Development of Digital Health Interventions for Self-Management Among Patients with Chronic Obstructive Pulmonary Disease in China

  An, Q., Kelley, M. M. & Yen, P. Y., Jun 6 2022, MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation - Proceedings of the 18th World Congress on Medical and Health Informatics. Otero, P., Scott, P., Martin, S. Z. & Huesing, E. (eds.). IOS Press BV, p. 1106-1107 2 p. (Studies in Health Technology and Informatics; vol. 290).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Pulmonary diseases 100%
  • Self-Management 80%
  • Chronic Obstructive Pulmonary Disease 65%
  • China 59%
  • Health 53%
• 2021

  BrainTumorNet: Multi-task learning for joint segmentation of high-grade glioma and brain metastases from MR images

  Chakrabarty, S., Sotiras, A., Milchenko, M., Lamontagne, P., Abraham, C., Robinson, C. & Marcus, D., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 115960K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • metastasis 100%
  • Multi-task learning 91%
  • learning 74%
  • Tumors 70%
  • grade 66%

• RespWatch: Robust Measurement of Respiratory Rate on Smartwatches with Photoplethysmography

  Dai, R., Lu, C., Avidan, M. & Kannampallil, T., May 18 2021, IoTDI 2021 - Proceedings of the 2021 International Conference on Internet-of-Things Design and Implementation. Association for Computing Machinery, Inc, p. 208-220 13 p. (IoTDI 2021 - Proceedings of the 2021 International Conference on Internet-of-Things Design and Implementation).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Photoplethysmography 100%
  • Deep learning 63%
  • Signal processing 57%
  • Monitoring 26%
  • Convolutional neural networks 21%
  7 Scopus citations

• Transformer-based Multi-target Regression on Electronic Health Records for Primordial Prevention of Cardiovascular Disease

  Poulain, R., Gupta, M., Foraker, R. & Beheshti, R., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 726-731 6 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Cardiovascular Disease 100%
  • Electronic Health Record 95%
  • Primary Prevention 74%
  • Electronic Health Records 73%
  • Health 52%
  1 Scopus citations

• Using Experience-Based Co-design to Develop mHealth App for Digital Pulmonary Rehabilitation Management of Patients with Chronic Obstructive Pulmonary Disease (COPD)

  An, Q., Kelley, M. M. & Yen, P. Y., 2021, HCI International 2021 - Late Breaking Posters - 23rd HCI International Conference, HCII 2021, Proceedings. Stephanidis, C., Antona, M. & Ntoa, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 125-133 9 p. (Communications in Computer and Information Science; vol. 1499 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Co-design 100%
  • Rehabilitation 76%
  • Pulmonary diseases 69%
  • mHealth 66%
  • Patient rehabilitation 48%
  2 Scopus citations
• 2020

  Integrative radiomic analysis for pre-surgical prognostic stratification of glioblastoma patients: from advanced to basic MRI protocols

  Bakas, S., Shukla, G., Akbari, H., Erus, G., Sotiras, A., Rathore, S., Sako, C., Ha, S. M., Rozycki, M., Singh, A., Shinohara, R., Bilello, M. & Davatzikos, C., 2020, Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 113151S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11315).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • stratification 100%
  • Stratification 94%
  • Magnetic resonance imaging 91%
  • Diffusion 53%
  • Imaging techniques 44%
  5 Scopus citations

• MAGIC: Multi-scale Heterogeneity Analysis and Clustering for Brain Diseases

  Wen, J., Varol, E., Chand, G., Sotiras, A. & Davatzikos, C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 678-687 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12267 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Alzheimer's Disease 100%
  • Brain 97%
  • Clustering 84%
  • Semi-supervised Clustering 66%
  • Evidence 29%
  1 Scopus citations

• The cancer imaging phenomics toolkit (CaPTk): Technical overview

  Pati, S., Singh, A., Rathore, S., Gastounioti, A., Bergman, M., Ngo, P., Ha, S. M., Bounias, D., Minock, J., Murphy, G., Li, H., Bhattarai, A., Wolf, A., Sridaran, P., Kalarot, R., Akbari, H., Sotiras, A., Thakur, S. P., Verma, R., Shinohara, R. T., & 5 othersYushkevich, P., Fan, Y., Kontos, D., Davatzikos, C. & Bakas, S., 2020, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 5th International Workshop, BrainLes 2019, Held in Conjunction with MICCAI 2019, Revised Selected Papers. Crimi, A. & Bakas, S. (eds.). Springer, p. 380-394 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11993 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Imaging 100%
  • Cancer 93%
  • Imaging techniques 69%
  • Batch Processing 25%
  • Predictive Modeling 24%
  26 Scopus citations
• 2018

  Echo: A large display interactive visualization of ICU data for effective care handoffs

  Thomas, M. M., Kannampallil, T., Abraham, J. & Marai, G. E., Jun 15 2018, 2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017. Institute of Electrical and Electronics Engineers Inc., p. 47-54 8 p. (2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Intensive Care Unit 100%
  • Intensive care units 93%
  • Visualization 74%
  • Patient Transfer 62%
  • Intensive Care Units 58%
  10 Scopus citations

• Effect of handoff training on resident communication quality: An observational study

  Abraham, J., Kannampallil, T. G., Ward, C. E., Bogan, C. & Hyderi, A., 2018, Proceedings of the 51st Annual Hawaii International Conference on System Sciences, HICSS 2018. Bui, T. X. (ed.). IEEE Computer Society, p. 2926-2935 10 p. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Communication 100%
  5 Scopus citations

• Generative discriminative models for multivariate inference and statistical mapping in medical imaging

  Varol, E., Sotiras, A., Zeng, K. & Davatzikos, C., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Davatzikos, C., Fichtinger, G., Alberola-López, C. & Schnabel, J. A. (eds.). Springer Verlag, p. 540-548 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11072 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Medical Imaging 100%
  • Medical imaging 85%
  • Neuroimaging 71%
  • Alzheimer's Disease 70%
  • Statistical Inference 48%
  5 Scopus citations

• Jointly Embedding Entities and Text with Distant Supervision

  Newman-Griffis, D., Lai, A. M. & Fosler-Lussier, E., 2018, ACL 2018 - Representation Learning for NLP, Proceedings of the 3rd Workshop. Association for Computational Linguistics (ACL), p. 195-206 12 p. (Proceedings of the Annual Meeting of the Association for Computational Linguistics).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Graph structures 100%
  • Natural language processing systems 98%
  • Supervision 84%
  • supervision 67%
  • Entity 59%
  17 Scopus citations

• QoE Tuning for remote access of interactive volume visualization applications

  Jonesi, S., Adams, J., Valluripally, S., Calyam, P., Hittle, B. & Lai, A., Nov 28 2018, 2018 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2018. Institute of Electrical and Electronics Engineers Inc., 8551560. (2018 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Graphics processing unit 100%
  • Tuning 83%
  • Visualization 82%
  • Servers 77%
  • Magnetic resonance 74%
  1 Scopus citations

• Regionally discriminative multivariate statistical mapping

  Varol, E., Sotiras, A. & Davatzikos, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1560-1563 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Brain 100%
  • Alzheimer Disease 94%
  • Statistics 93%
  • Learning 89%
  • Neuroimaging 79%
  1 Scopus citations

• Statistically-constrained robust diffeomorphic registration

  Zeng, K., Sotiras, A. & Davatzikos, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1083-1087 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Statistical Models 100%
  • Brain 43%
  • Pathology 37%
  • Principal Component Analysis 31%
  • Noise 27%
• 2017

  Inductive identification of functional status information and establishing a gold standard corpus: A case study on the Mobility domain

  Thieu, T., Camacho, J., Ho, P. S., Porcino, J., Ding, M., Nelson, L., Rasch, E., Zhou, C., Chan, L., Brandt, D., Newman-Griffis, D., Yuan, A. & Lai, A. M., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2319-2321 3 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Electronic Health Records 100%
  • Natural Language Processing 96%
  • Vocabulary 80%
  • Health 71%
  • Terminology 65%
  7 Scopus citations

• Insights into Analogy Completion from the Biomedical Domain

  Newman-Griffis, D., Lai, A. M. & Fosler-Lussier, E., 2017, BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop. Association for Computational Linguistics (ACL), p. 19-28 10 p. (BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Completion 100%
  • semantics 83%
  • Datasets 83%
  • Semantics 72%
  • regularity 56%
  10 Scopus citations

• Visualizing article similarities via sparsified article network and map projection for systematic reviews

  Ji, X., Machiraju, R., Ritter, A. & Yen, P. Y., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Dongsheng, Z., Gundlapalli, A. V. & Marie-Christine, J. (eds.). IOS Press, p. 422-426 5 p. (Studies in Health Technology and Informatics; vol. 245).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Visualization 100%
  • Systematic Reviews 96%
  • Dimensionality reduction 47%
  • Screening 40%
  • Cluster Analysis 38%
  4 Scopus citations
• 2016

  Communication Patterns in a Collaborative Medication Scheduling Task among Older Adults

  Kannampallil, T. G., Morrow, D. G., Fu, W. T., Raquel, L. & Muriset, A., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Fu, W-T., Zheng, K., Hodges, L., Stiglic, G. & Blandford, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 367-374 8 p. 7776385. (Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • communication pattern 100%
  • scheduling 88%
  • medication 69%
  • conversation 61%
  • Communication 60%
  1 Scopus citations

• DrugMoaMiner: A computational tool for mechanism of action discovery and personalized drug sensitivity prediction

  Li, F., Wang, L., Kong, R., Sheng, J., Cao, H., Mancuso, J., Xia, X., Stephan, C. & Wong, S. T. C., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 368-371 4 p. 7455911. (3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Miners 100%
  • Drug Discovery 77%
  • Dasatinib 69%
  • Pharmaceutical Preparations 31%
  • Non-Small Cell Lung Carcinoma 22%
  4 Scopus citations

• GLISTRboost: Combining multimodal MRI segmentation, registration, and biophysical tumor growth modeling with gradient boosting machines for glioma segmentation

  Bakas, S., Zeng, K., Sotiras, A., Rathore, S., Akbari, H., Gaonkar, B., Rozycki, M., Pati, S. & Davatzikos, C., Jan 1 2016, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 1st International Workshop, Brainles 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Reyes, M., Crimi, A., Maier, O., Maier, O., Handels, H. & Menze, B. (eds.). Springer Verlag, p. 144-155 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9556).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Boosting 100%
  • Registration 96%
  • Tumor Growth 92%
  • Segmentation 89%
  • Tumor 79%
  72 Scopus citations

• Identification, characterization, and grounding of gradable terms in clinical text

  Shivade, C., De Marneffe, M. C., Fosler-Lussier, E. & Lai, A. M., 2016, BioNLP 2016 - Proceedings of the 15th Workshop on Biomedical Natural Language Processing. Cohen, K. B., Demner-Fushman, D., Ananiadou, S. & Tsujii, J. (eds.). Association for Computational Linguistics (ACL), p. 17-26 10 p. (BioNLP 2016 - Proceedings of the 15th Workshop on Biomedical Natural Language Processing).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Gradable Adjectives 100%
  • Statistical Models 72%
  • Electric grounding 68%
  • Clinical Decision-Making 67%
  • Grounding 61%
  5 Scopus citations

• Segmentation of gliomas in pre-operative and post-operative multimodal magnetic resonance imaging volumes based on a hybrid generative-discriminative framework

  Zeng, K., Bakas, S., Sotiras, A., Akbari, H., Rozycki, M., Rathore, S., Pati, S. & Davatzikos, C., 2016, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Second International Workshop, BrainLes 2016, with the Challenges on BRATS, ISLES and mTOP 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Menze, B., Reyes, M., Crimi, A., Maier, O., Winzeck, S. & Handels, H. (eds.). Springer Verlag, p. 184-194 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10154 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Magnetic Resonance Imaging 100%
  • Segmentation 82%
  • Magnetic resonance 70%
  • Tumors 69%
  • Imaging techniques 51%
  20 Scopus citations

• Structured outlier detection in neuroimaging studies with minimal convex polytopes

  Varol, E., Sotiras, A. & Davatzikos, C., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Ourselin, S., Joskowicz, L., Sabuncu, M. R., Wells, W. & Unal, G. (eds.). Springer Verlag, p. 300-307 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Neuroimaging 100%
  • Outlier Detection 94%
  • Convex Polytope 81%
  • Anomaly detection 72%
  • Alzheimer's Disease 65%
  1 Scopus citations
• 2015

  A Metadata based Knowledge Discovery Methodology for Seeding Translational Research

  Kothari, C. R. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1071 1 p. (Studies in Health Technology and Informatics; vol. 216).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Knowledge Discovery 100%
  • Metadata 93%
  • Translational Medical Research 71%
  • Semantics 65%
  • Data mining 52%
  1 Scopus citations

• Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma

  Regan, K., Raje, S., Saravanamuthu, C. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 663-667 5 p. (Studies in Health Technology and Informatics; vol. 216).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Knowledge Discovery 100%
  • Drug Combinations 65%
  • Melanoma 52%
  • Data mining 52%
  • Databases 38%
  3 Scopus citations

• Corpus-based discovery of semantic intensity scales

  Shivade, C., De Marneffe, M. C., Fosler-Lussier, E. & Lai, A. M., 2015, NAACL HLT 2015 - 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference. Association for Computational Linguistics (ACL), p. 483-493 11 p. (NAACL HLT 2015 - 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Corpus-based 100%
  • ranking 73%
  • semantics 66%
  • Pipelines 63%
  • Semantics 56%
  9 Scopus citations

• Domain Analysis of Integrated Data to Reduce Cost Associated with Liver Disease

  Motiwala, T., Kite, B., Regan, K., Gascon, G. M. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 414-418 5 p. (Studies in Health Technology and Informatics; vol. 216).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Liver 100%
  • Liver Diseases 70%
  • Data Analysis 62%
  • Costs and Cost Analysis 52%
  • Metabolic Syndrome 43%

• Graph-based motion-driven segmentation of the carotid atherosclerotique plaque in 2D ultrasound sequences

  Gastounioti, A., Sotiras, A., Nikita, K. S. & Paragios, N., 2015, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Frangi, A. F., Navab, N., Hornegger, J. & Wells, W. M. (eds.). Springer Verlag, p. 551-559 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Ultrasound 100%
  • Segmentation 83%
  • Kinematics 70%
  • Ultrasound Image 62%
  • Ultrasonics 59%
  5 Scopus citations

• Local atlas selection for discrete multi-atlas segmentation

  Alchatzidis, S., Sotiras, A. & Paragios, N., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 363-367 5 p. 7163888. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Atlases 100%
  • Masks 87%
  • Politics 56%
  • Labeling 45%
  • Relaxation 43%
  3 Scopus citations

• Modular linear iconic matching using higher order graphs

  Fecamp, V., Sotiras, A. & Paragios, N., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 1097-1101 5 p. 7164063. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Linear transformations 100%
  • Decomposition 56%
  2 Scopus citations

• Real-time Data Fusion Platforms: The Need of Multi-dimensional Data-driven Research in Biomedical Informatics

  Raje, S., Kite, B., Ramanathan, J. & Payne, P., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1107 1 p. (Studies in Health Technology and Informatics; vol. 216).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Informatics 100%
  • Bioinformatics 86%
  • Data fusion 83%
  • Biomedical Research 79%
  • Data Analysis 59%
  1 Scopus citations

• Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts

  Abrams, Z. B., Peabody, A. L., Heerema, N. A. & Payne, P. R. O., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1037 1 p. (Studies in Health Technology and Informatics; vol. 216).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Drug Repositioning 100%
  • Data Mining 88%
  • Text mining 83%
  • Terminology 79%
  • Karyotype 74%
  4 Scopus citations
• 2014

  An integrated analytic pipeline for identifying and predicting genetic interactions based on perturbation data from high content double RNAi screening

  Yin, Z., Li, F. & Wong, S. T. C., 2014, Proceedings of the XSEDE 2014 Conference: Engaging Communities. Association for Computing Machinery, 7. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Screening 100%
  • Pipelines 81%
  • Fluorescence 61%
  • Genomics 55%
  • Cells 52%

• Cross-narrative temporal ordering of medical events

  Raghavan, P., Fosler-Lussier, E., Elhadad, N. & Lai, A. M., 2014, Long Papers. Association for Computational Linguistics (ACL), p. 998-1008 11 p. (52nd Annual Meeting of the Association for Computational Linguistics, ACL 2014 - Proceedings of the Conference; vol. 1).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Alignment 100%
  • narrative 94%
  • event 86%
  • Programming 74%
  • course of a disease 62%
  13 Scopus citations

• Efficient and automated multimodal satellite data registration through MRFs and linear programming

  Karantzalos, K., Sotiras, A. & Paragios, N., Sep 24 2014, Proceedings - 2014 IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2014. IEEE Computer Society, p. 335-342 8 p. 6910003. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Remote sensing 100%
  • Linear programming 89%
  • Satellites 74%
  • Radar 51%
  • Pixels 48%
  19 Scopus citations

• Quantifying physician activities in emergency care: An exploratory study

  Abraham, J. & Kannampallil, T. G., 2014, 2014 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2014. Human Factors an Ergonomics Society Inc., p. 798-802 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2014-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • emergency care 100%
  • physician 54%
  • Monitoring 40%
  • Communication 35%
  • patient care 8%
  1 Scopus citations

• Towards symbiosis in knowledge representation and natural language processing for structuring clinical practice guidelines

  Weng, C., Payne, P. R. O., Velez, M., Johnson, S. B. & Bakken, S., 2014, Nursing Informatics 2014: East Meets West eSMART+ - Proceedings of the 12th International Congress on Nursing Informatics, NI 2014. IOS Press, p. 461-469 9 p. (Studies in Health Technology and Informatics; vol. 201).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Natural Language Processing 100%
  • Symbiosis 92%
  • Knowledge representation 73%
  • Practice Guidelines 63%
  • Knowledge acquisition 59%
  3 Scopus citations
• 2013

  A novel geodesic distance based clustering approach to delineating boundaries of touching cells

  Chen, X., Zhu, Y., Li, F., Zheng, Z., Chang, E., Ma, J. & Wong, S. T. C., 2013, Advances in Neural Networks, ISNN 2013 - 10th International Symposium on Neural Networks, Proceedings. PART 2 ed. Springer Verlag, p. 315-322 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7952 LNCS, no. PART 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Epithelial Cells 100%
  • Geodesic Distance 84%
  • Microscopic examination 69%
  • Clustering 60%
  • Proteins 58%
  2 Scopus citations

• Deriving statistical significance maps for support vector regression using medical imaging data

  Gaonkar, B., Sotiras, A. & Davatzikos, C., 2013, Proceedings - 2013 3rd International Workshop on Pattern Recognition in Neuroimaging, PRNI 2013. p. 13-16 4 p. 6603545. (Proceedings - 2013 3rd International Workshop on Pattern Recognition in Neuroimaging, PRNI 2013).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Support vector regression 100%
  • Medical imaging 97%
  • Testing 35%
  • Regression analysis 35%
  • Neuroimaging 22%
  4 Scopus citations

• Integrating population- and patient-level data for secondary use of electronic health records to study overweight and obesity

  Roth, C., Shivade, C. P., Foraker, R. E. & Embi, P. J., Jan 1 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, 1 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Electronic Health Records 100%
  • Overweight 86%
  • Health 71%
  • Obesity 68%
  • Logistic Models 63%
  6 Scopus citations

• Re-coordinating activities: An investigation of articulation work in patient transfers

  Abraham, J. & Reddy, M. C., 2013, CSCW 2013 - Proceedings of the 2013 ACM Conference on Computer Supported Cooperative Work. p. 67-78 12 p. (Proceedings of the ACM Conference on Computer Supported Cooperative Work, CSCW).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Hinges 100%
  29 Scopus citations

• Sparse classification with MRI based markers for neuromuscular disease categorization

  Gkirtzou, K., Deux, J. F., Bassez, G., Sotiras, A., Rahmouni, A., Varacca, T., Paragios, N. & Blaschko, M. B., 2013, Machine Learning in Medical Imaging - 4th International Workshop, MLMI 2013, Held in Conjunction with MICCAI 2013, Proceedings. Springer Verlag, p. 33-40 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8184 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Magnetic Resonance Imaging 100%
  • Categorization 91%
  • Feature Selection 60%
  • Feature extraction 52%
  • Diffusion tensor imaging 52%
  1 Scopus citations