Institute for Informatics, Data Science and Biostatistics (I2DB)

Bakas, S., Shukla, G., Akbari, H., Erus, G., Sotiras, A., Rathore, S., Sako, C., Ha, S. M., Rozycki, M., Singh, A., Shinohara, R., Bilello, M. & Davatzikos, C., 2020, Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 113151S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11315).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

iTBS to Relieve Depression and Executive Dysfunction in Older Adults: An Open Label Study

Cristancho, P., Kamel, L., Araque, M., Berger, J., Blumberger, D. M., Miller, J. P., Barch, D. M. & Lenze, E. J., Nov 2020, In: American Journal of Geriatric Psychiatry. 28, 11, p. 1195-1199 5 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Language matters: Precision health as a cross-cutting care, research and policy agenda

Payne, P. R. O. & Detmer, D. E., Apr 1 2020, In: Journal of the American Medical Informatics Association. 27, 4, p. 658-661 4 p.

Research output: Contribution to journal › Review article › peer-review

7 Scopus citations

Leaf: An open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research

Dobbins, N. J., Spital, C. H., Black, R. A., Morrison, J. M., De Veer, B., Zampino, E., Harrington, R. D., Britt, B. D., Stephens, K. A., Wilcox, A. B., Tarczy-Hornoch, P. & Mooney, S. D., Jan 1 2020, In: Journal of the American Medical Informatics Association. 27, 1, p. 109-118 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

32 Scopus citations

Listening and question-asking behaviors in resident and nurse handoff conversations: A prospective observational study

Kannampallil, T. & Abraham, J., 2020, In: JAMIA Open. 3, 1, p. 87-93 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

MAGIC: Multi-scale Heterogeneity Analysis and Clustering for Brain Diseases

Wen, J., Varol, E., Chand, G., Sotiras, A. & Davatzikos, C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 678-687 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12267 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Mass spectrometry– based selectivity profiling identifies a highly selective inhibitor of the kinase MELK that delays mitotic entry in cancer cells

McDonald, I. M., Grant, G. D., East, M. P., Gilbert, T. S. K., Wilkerson, E. M., Goldfarb, D., Beri, J., Herring, L. E., Vaziri, C., Cook, J. G., Emanuele, M. J. & Graves, L. M., Feb 21 2020, In: Journal of Biological Chemistry. 295, 8, p. 2359-2374 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

Measures of general and abdominal obesity and disability severity in a large population of people with multiple sclerosis

Fitzgerald, K. C., Salter, A., Tyry, T., Fox, R. J., Cutter, G. & Marrie, R. A., Jul 1 2020, In: Multiple Sclerosis Journal. 26, 8, p. 976-986 11 p.

Research output: Contribution to journal › Article › peer-review

31 Scopus citations

Mindfulness, Education, and Exercise for age-related cognitive decline: Study protocol, pilot study results, and description of the baseline sample

On Behalf of the MEDEX Research Group, Oct 1 2020, In: Clinical Trials. 17, 5, p. 581-594 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Mining reported adverse events induced by potential opioid-drug interactions

Chen, J., Wu, G., Michelson, A., Vesoulis, Z., Bogner, J., Corrigan, J. D., Payne, P. R. O. & Li, F., 2020, In: JAMIA Open. 3, 1, p. 104-112 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Moving patients from emergency department to medical intensive care unit: Tracing barriers and root contributors

Abraham, J., Burton, S. & Gordon, H. S., Jan 2020, In: International Journal of Medical Informatics. 133, 104012.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Multi-system factors associated with metatarsophalangeal joint deformity in individuals with type 2 diabetes

Zellers, J. A., Mueller, M. J., Commean, P. K., Chen, L., Jeong, H. J. & Hastings, M. K., Apr 2020, In: Journal of Clinical Medicine. 9, 4, 1012.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Neurobiological Divergence of the Positive and Negative Schizophrenia Subtypes Identified on a New Factor Structure of Psychopathology Using Non-negative Factorization: An International Machine Learning Study

Pharmacotherapy Monitoring and Outcome Survey (PHAMOUS) Investigators, Feb 1 2020, In: Biological Psychiatry. 87, 3, p. 282-293 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

59 Scopus citations

Neurostructural Heterogeneity in Youths With Internalizing Symptoms

Kaczkurkin, A. N., Sotiras, A., Baller, E. B., Barzilay, R., Calkins, M. E., Chand, G. B., Cui, Z., Erus, G., Fan, Y., Gur, R. E., Gur, R. C., Moore, T. M., Roalf, D. R., Rosen, A. F. G., Ruparel, K., Shinohara, R. T., Varol, E., Wolf, D. H., Davatzikos, C. & Satterthwaite, T. D., Mar 1 2020, In: Biological Psychiatry. 87, 5, p. 473-482 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

Optimizing emergency department care transitions to outpatient settings: A systematic review and meta-analysis

Aghajafari, F., Sayed, S., Emami, N., Lang, E. & Abraham, J., Dec 2020, In: American Journal of Emergency Medicine. 38, 12, p. 2667-2680 14 p.

Research output: Contribution to journal › Review article › peer-review

11 Scopus citations

Overall survival prediction in glioblastoma patients using structural magnetic resonance imaging (MRI): Advanced radiomic features may compensate for lack of advanced MRI modalities

Bakas, S., Shukla, G., Akbari, H., Erus, G., Sotiras, A., Rathore, S., Sako, C., Min Ha, S., Rozycki, M., Shinohara, R. T., Bilello, M. & Davatzikos, C., May 1 2020, In: Journal of Medical Imaging. 7, 3, 031505.

Research output: Contribution to journal › Article › peer-review

Open Access

33 Scopus citations

Personas for the translational workforce

Gonzales, S., Okeefe, L., Gutzman, K., Viger, G., Wescott, A. B., Farrow, B., Heath, A. P., Kim, M. C., Taylor, D., Champieux, R., Yen, P. Y. & Holmes, K., 2020, In: Journal of Clinical and Translational Science. 4, 4, p. 286-293 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Physical Therapists and Physicians Evaluate Nonarthritic Hip Disease Differently: Results from a National Survey

Brown-Taylor, L., Lynch, A., Foraker, R., Harris-Hayes, M., Walrod, B., Vasileff, W. K., Glaws, K. & Di Stasi, S., Jun 23 2020, In: Physical therapy. 100, 6, p. 917-932 16 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

4 Scopus citations

Precision medicine: Subgroup identification in longitudinal trajectories

Wei, Y., Liu, L., Su, X., Zhao, L. & Jiang, H., Sep 1 2020, In: Statistical Methods in Medical Research. 29, 9, p. 2603-2616 14 p.

Research output: Contribution to journal › Article › peer-review

10 Scopus citations

Predicting Tumor Cell Response to Synergistic Drug Combinations Using a Novel Simplified Deep Learning Model

Zhang, H., Feng, J., Zeng, A., Payne, P. & Li, F., 2020, In: AMIA ... Annual Symposium proceedings. AMIA Symposium. 2020, p. 1364-1372 9 p.

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

Preface grail 2020

Fehri, H., Sotiras, A., Papiez, B., Ferrante, E. & Parisot, S., 2020, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 12443 LNCS, p. xi-xii

Research output: Contribution to journal › Editorial

Probabilistic forecasting of surgical case duration using machine learning: Model development and validation

Jiao, Y., Sharma, A., Abdallah, A. B., Maddox, T. M. & Kannampallil, T., Dec 1 2020, In: Journal of the American Medical Informatics Association. 27, 12, p. 1885-1893 9 p.

Research output: Contribution to journal › Article › peer-review

26 Scopus citations

Prospective assessment of the clinical benefit of a tailored cancer gene set built on a next-generation sequencing platform in patients with recurrent or metastatic head and neck cancer

Westbrook, T. C., Hagemann, I. S., Ley, J., Chen, K., Palka, K., Liu, J., Chen, L., Oppelt, P. & Adkins, D., Feb 1 2020, In: Medical Oncology. 37, 2, 12.

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Protocol for a proof-of-concept observational study evaluating the potential utility and acceptability of a telemedicine solution for the post-anesthesia care unit

Avidan, M. S., Budelier, T. P., King, C. R., Goswami, S., Bansal, A., Gregory, S. H., Wildes, T. S., Abraham, J., McKinnon, S. L., Cooper, A., Kangrga, I., Martin, J. L., Milbrandt, M. & Evers, A. S., 2020, In: F1000Research. 9, 1261.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Protocol for the effectiveness of an anesthesiology control tower system in improving perioperative quality metrics and clinical outcomes: The tectonics randomized, pragmatic trial

King, C. R., Abraham, J., Kannampallil, T. G., Fritz, B. A., Abdallah, A. B., Chen, Y., Henrichs, B., Politi, M., Torres, B. A., Mickle, A., Budelier, T. P., McKinnon, S., Gregory, S., Kheterpal, S., Wildes, T., Avidan, M. S. & Tectonics Research Group, R. G., 2020, In: F1000Research. 8

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries (Nature Communications, (2018), 9, 1, (2606), 10.1038/s41467-018-04668-w)

NHLBI TOPMed Lipids Working Group, Dec 1 2020, In: Nature communications. 11, 1, 1715.

Research output: Contribution to journal › Comment/debate

Open Access

2 Scopus citations

Publisher Correction: SARS-CoV-2 infection of human ACE2-transgenic mice causes severe lung inflammation and impaired function (Nature Immunology, (2020), 21, 11, (1327-1335), 10.1038/s41590-020-0778-2)

Winkler, E. S., Bailey, A. L., Kafai, N. M., Nair, S., McCune, B. T., Yu, J., Fox, J. M., Chen, R. E., Earnest, J. T., Keeler, S. P., Ritter, J. H., Kang, L. I., Dort, S., Robichaud, A., Head, R., Holtzman, M. J. & Diamond, M. S., Nov 1 2020, In: Nature immunology. 21, 11, p. 1470 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

24 Scopus citations

Rapid Diet Assessment Screening Tools for Cardiovascular Disease Risk Reduction Across Healthcare Settings: A Scientific Statement From the American Heart Association

Vadiveloo, M., Lichtenstein, A. H., Anderson, C., Aspry, K., Foraker, R., Griggs, S., Hayman, L. L., Johnston, E., Stone, N. J. & Thorndike, A. N., Sep 1 2020, In: Circulation: Cardiovascular Quality and Outcomes. 13, 9, p. E000094

Research output: Contribution to journal › Review article › peer-review

Open Access

72 Scopus citations

Reduction in Cerebrospinal Fluid Volume as an Early Quantitative Biomarker of Cerebral Edema After Ischemic Stroke

Dhar, R., Chen, Y., Hamzehloo, A., Kumar, A., Heitsch, L., He, J., Chen, L., Slowik, A., Strbian, D. & Lee, J. M., Feb 1 2020, In: Stroke. 51, 2, p. 462-467 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

38 Scopus citations

Relationships between big-five personality factors and Alzheimer's disease pathology in autosomal dominant Alzheimer's disease

for the Dominantly Inherited Alzheimer Network, 2020, In: Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 12, 1, e12038.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

Relationships within and between lower and upper extremity dysfunction in people with diabetes

Hastings, M. K., Jeong, H. J., Sorensen, C. J., Zellers, J. A., Chen, L., Bohnert, K. L., Snozek, D. & Mueller, M. J., Sep 2020, In: Foot. 44, 101680.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Safety and efficacy of co-administered diethylcarbamazine, albendazole and ivermectin during mass drug administration for lymphatic filariasis in Haiti: Results from a two-armed, open-label, cluster-randomized, community study

Dubray, C. L., Sircar, A. D., de Rochars, V. M. B., Bogus, J., Direny, A. N., Ernest, J. R., Fayette, C. R., Goss, C. W., Hast, M., O’brian, K., Pavilus, G. E., Sabin, D. F., Wiegand, R. E., Weil, G. J. & Lemoine, J. F., Jun 2020, In: PLoS neglected tropical diseases. 14, 6, p. 1-21 21 p., e0008298.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Sample size re-estimation for confirmatory two-stage flexible multi-arm trial with normal outcomes

Li, Y., Wang, G. & Szychowski, J. M., Jan 2 2020, In: Journal of Statistical Computation and Simulation. 90, 1, p. 157-178 22 p.

Research output: Contribution to journal › Article › peer-review

SARS-CoV-2 infection of human ACE2-transgenic mice causes severe lung inflammation and impaired function

Winkler, E. S., Bailey, A. L., Kafai, N. M., Nair, S., McCune, B. T., Yu, J., Fox, J. M., Chen, R. E., Earnest, J. T., Keeler, S. P., Ritter, J. H., Kang, L. I., Dort, S., Robichaud, A., Head, R., Holtzman, M. J. & Diamond, M. S., Nov 1 2020, In: Nature immunology. 21, 11, p. 1327-1335 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

612 Scopus citations

SCOR: A secure international informatics infrastructure to investigate COVID-19

Raisaro, J. L., Marino, F., Troncoso-Pastoriza, J., Beau-Lejdstrom, R., Bellazzi, R., Murphy, R., Bernstam, E. V., Wang, H., Bucalo, M., Chen, Y., Gottlieb, A., Harmanci, A., Kim, M., Kim, Y., Klann, J., Klersy, C., Malin, B. A., Meán, M., Prasser, F. & Scudeller, L. & 14 others, Torkamani, A., Vaucher, J., Puppala, M., Wong, S. T. C., Frenkel-Morgenstern, M., Xu, H., Musa, B. M., Habib, A. G., Cohen, T., Wilcox, A., Salihu, H. M., Sofia, H., Jiang, X. & Hubaux, J. P., Nov 1 2020, In: Journal of the American Medical Informatics Association. 27, 11, p. 1721-1726 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

25 Scopus citations

Sequence of Alzheimer disease biomarker changes in cognitively normal adults: A cross-sectional study

Luo, J., Agboola, F., Grant, E., Masters, C. L., Albert, M. S., Johnson, S. C., McDade, E. M., Vöglein, J., Fagan, A. M., Benzinger, T., Massoumzadeh, P., Hassenstab, J., Bateman, R. J., Morris, J. C., Perrin, R. J., Chhatwal, J., Jucker, M., Ghetti, B., Cruchaga, C. & Graff-Radford, N. R. & 3 others, Schofield, P. R., Mori, H. & Xiong, C., Dec 8 2020, In: Neurology. 95, 23, p. E3104-E3116

Research output: Contribution to journal › Article › peer-review

Open Access

37 Scopus citations

Serum neurofilament light chain levels are associated with white matter integrity in autosomal dominant Alzheimer's disease

for the Dominantly Inherited Alzheimer Network, Aug 2020, In: Neurobiology of Disease. 142, 104960.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

Short sleep duration and latent classes of risk profiles among adolescents

Lew, D., Xian, H., Loux, T., Qian, Z. & Vaughn, M., 2020, In: Health Behavior and Policy Review. 7, 1, p. 27-37 11 p.

Research output: Contribution to journal › Article › peer-review

Simple Quasi-Bayes Approach for Modeling Mean Medical Costs

Yoon, G., Jiang, W., Liu, L. & Shih, Y. C. T., May 1 2020, In: International Journal of Biostatistics. 16, 1, 20180122.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Single-session bronchial thermoplasty guided by 129xe magnetic resonance imaging a pilot randomized controlled clinical trial

Hall, C. S., Quirk, J. D., Goss, C. W., Lew, D., Kozlowski, J., Thomen, R. P., Woods, J. C., Tustison, N. J., Mugler, J. P., Gallagher, L., Koch, T., Schechtman, K. B., Ruset, I. C., Hersman, F. W. & Castro, M., Aug 15 2020, In: American journal of respiratory and critical care medicine. 202, 4, p. 524-534 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

56 Scopus citations

Single-subject grey matter network trajectories over the disease course of autosomal dominant Alzheimer's disease

Vermunt, L., Dicks, E., Wang, G., Dincer, A., Flores, S., Keefe, S. J., Berman, S. B., Cash, D. M., Chhatwal, J. P., Cruchaga, C., Fox, N. C., Ghetti, B., Graff-Radford, N. R., Hassenstab, J., Karch, C. M., Laske, C., Levin, J., Masters, C. L., McDade, E. & Mori, H. & 92 others, Morris, J. C., Noble, J. M., Perrin, R. J., Schofield, P. R., Xiong, C., Scheltens, P., Visser, P. J., Bateman, R. J., Benzinger, T. L. S., Tijms, B. M., Gordon, B. A., Allegri, R., Amtashar, F., Berman, S., Bodge, C., Brandon, S., Brooks, W., Buck, J., Buckles, V., Chea, S., Chrem, P., Chui, H., Cinco, J., Jack, C., D'Mello, M., Donahue, T., Douglas, J., Edigo, N., Erekin-Taner, N., Fagan, A., Farlow, M., Farrar, A., Feldman, H., Flynn, G., Fox, N., Franklin, E., Fujii, H., Gant, C., Gardener, S., Ghetti, B., Goate, A., Goldman, J., Gordon, B., Gray, J., Gurney, J., Hassenstab, J., Hirohara, M., Holtzman, D., Hornbeck, R., Dibari, S. H., Ikeuchi, T., Ikonomovic, S., Jerome, G., Jucker, M., Kasuga, K., Kawarabayashi, T., Klunk, W., Koeppe, R., Kuder-Buletta, E., Laske, C., Levin, J., Marcus, D., Martins, R., Mason, N. S., Maue-Dreyfus, D., McDade, E., Montoya, L., Mori, H., Nagamatsu, A., Neimeyer, K., Noble, J., Norton, J., Perrin, R., Raichle, M., Ringman, J., Roh, J. H., Schofield, P., Shimada, H., Shiroto, T., Shoji, M., Sigurdson, W., Sohrabi, H., Sparks, P., Suzuki, K., Swisher, L., Taddei, K., Wang, J., Wang, P., Weiner, M., Wolfsberger, M., Xiong, C. & Xu, X., Dec 1 2020, In: Brain Communications. 2, 2, fcaa102.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Smoking-by-genotype interaction in type 2 diabetes risk and fasting glucose

Wu, P., Rybin, D., Bielak, L. F., Feitosa, M. F., Franceschini, N., Li, Y., Lu, Y., Marten, J., Musani, S. K., Noordam, R., Raghavan, S., Rose, L. M., Schwander, K., Smith, A. V., Tajuddin, S. M., Vojinovic, D., Amin, N., Arnett, D. K., Bottinger, E. P. & Demirkan, A. & 38 others, Florez, J. C., Ghanbari, M., Harris, T. B., Launer, L. J., Liu, J., Liu, J., Mook-Kanamori, D. O., Murray, A. D., Nalls, M. A., Peyser, P. A., Uitterlinden, A. G., Voortman, T., Bouchard, C., Chasman, D., Correa, A., de Mutsert, R., Evans, M. K., Gudnason, V., Hayward, C., Kao, L., Kardia, S. L. R., Kooperberg, C., Loos, R. J. F., Province, M. M., Rankinen, T., Redline, S., Ridker, P. M., Rotter, J. I., Siscovick, D., Smith, B. H., van Duijn, C., Zonderman, A. B., Rao, D. C., Wilson, J. G., Dupuis, J., Meigs, J. B., Liu, C. T. & Vassy, J. L., May 2020, In: PloS one. 15, 5, e0230815.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing

Johnson, T. S., Xiang, S., Helm, B. R., Abrams, Z. B., Neidecker, P., Machiraju, R., Zhang, Y., Huang, K. & Zhang, J., Dec 1 2020, In: Scientific reports. 10, 1, 18014.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Spatiotemporal relationship between subthreshold amyloid accumulation and aerobic glycolysis in the human brain

Goyal, M. S., Gordon, B. A., Couture, L. E., Flores, S., Xiong, C., Morris, J. C., Raichle, M. E., L-S. Benzinger, T. & Vlassenko, A. G., Dec 2020, In: Neurobiology of Aging. 96, p. 165-175 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Spot the difference: Comparing results of analyses from real patient data and synthetic derivatives

Foraker, R. E., Yu, S. C., Gupta, A., Michelson, A. P., Pineda Soto, J. A., Colvin, R., Loh, F., Kollef, M. H., Maddox, T., Evanoff, B., Dror, H., Zamstein, N., Lai, A. M. & Payne, P. R. O., Dec 1 2020, In: JAMIA Open. 3, 4, p. 557-566 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

36 Scopus citations

Stereoselective Steady-State Disposition and Bioequivalence of Brand and Generic Bupropion in Adults

Kharasch, E. D., Neiner, A., Kraus, K., Blood, J., Stevens, A., Miller, J. P. & Lenze, E. J., Nov 1 2020, In: Clinical pharmacology and therapeutics. 108, 5, p. 1036-1048 13 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Institute for Informatics, Data Science and Biostatistics (I2DB)

Research output

Search results