Edison Family Center for Genome Sciences & Systems Biology

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  • 2015

    Can psychometric measurement models inform behavior genetic models? A bayesian model comparison approach

    Wang, T., Wood, P. K. & Heath, A. C., 2015, Dependent Data in Social Sciences Research: Forms, Issues, and Methods of Analysis. Wiedermann, W., von Eye, A. & Stemmler, M. (eds.). Springer New York LLC, p. 231-259 29 p. (Springer Proceedings in Mathematics and Statistics; vol. 145).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 2013

    MethylCRF, an algorithm for estimating absolute methylation levels at single CpG resolution from methylation enrichment and restriction enzyme sequencing methods

    Stevens, M., Cheng, J. B., Xie, M., Costello, J. F. & Wang, T., Apr 3 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 266-268 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2011

    A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription

    KuttyKrishnan, S., Sabina, J., Langton, L., Johnston, M. & Brent, M. R., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 153 1 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations
  • 2010

    Detecting coevolution of functionally related proteins for automated protein annotation

    Kwan, A. L., Dutcher, S. K. & Stormo, G. D., 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 99-105 7 p. 5521705. (10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations
  • 2009

    Constrained optimization for validation-guided conditional random field learning

    Chen, M., Chen, Y., Brent, M. R. & Tenney, A. E., 2009, KDD '09: Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 189-197 9 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Gradient-based feature selection for conditional random fields and its applications in computational genetics

    Chen, M., Chen, Y., Brent, M. R. & Tenney, A. E., 2009, ICTAI 2009 - 21st IEEE International Conference on Tools with Artificial Intelligence. p. 750-757 8 p. 5366367. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 2008

    CRF-OPT: An efficient high-quality conditional random field solver

    Chen, M., Chen, Y. & Brent, M. R., 2008, AAAI-08/IAAI-08 Proceedings - 23rd AAAI Conference on Artificial Intelligence and the 20th Innovative Applications of Artificial Intelligence Conference. p. 1018-1023 6 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Gathering the gold dust: Methods for assessing the aggregate impact of small effect genes in genomic scans

    Province, M. A. & Borecki, I. B., 2008, Pacific Symposium on Biocomputing 2008, PSB 2008. p. 190-200 11 p. (Pacific Symposium on Biocomputing 2008, PSB 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations
  • 2007

    DNA-protein interactions: Integrating structure, sequence, and function

    Bulyk, M. L., Hartemink, A. J., Fraenkel, E. & Stormo, G., 2007, Pacific Symposium on Biocomputing 2007, PSB 2007. p. 470-471 2 p. (Pacific Symposium on Biocomputing 2007, PSB 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2003

    An iterative loop matching approach to the prediction of RNA secondary structures with pseudoknots

    Ruan, J., Stormo, G. D. & Zhang, W., 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 519-520 2 p. 1227394. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A probabilistic model for learning concatenative morphology

    Snover, M. G. & Brent, M. R., 2003, Advances in Neural Information Processing Systems 15 - Proceedings of the 2002 Conference, NIPS 2002. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2002

    A Probabilistic Model for Learning Concatenative Morphology

    Snover, M. G. & Brent, M. R., 2002, NIPS 2002: Proceedings of the 15th International Conference on Neural Information Processing Systems. Becker, S., Thrun, S. & Obermayer, K. (eds.). MIT Press Journals, p. 1513-1520 8 p. (NIPS 2002: Proceedings of the 15th International Conference on Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 2000

    Selecting optimum DNA oligos for microarrays

    Li, F. & Stormo, G. D., Jan 1 2000, Proceedings - IEEE International Symposium on Bio-Informatics and Biomedical Engineering, BIBE 2000. Institute of Electrical and Electronics Engineers Inc., p. 200-207 8 p. 889608. (Proceedings - IEEE International Symposium on Bio-Informatics and Biomedical Engineering, BIBE 2000).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations
  • 1999

    A Phylogenetic Approach to RNA Structure Prediction

    Akmaev, V. R., Kelley, S. T. & Stormo, G. D., 1999, Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB 1999. AAAI press, (Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB 1999).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 1996

    Lexical categorization: Fitting template grammars by incremental mdl optimization

    Brent, M. R. & Cartwright, T. A., 1996, Grammatical Inference: Learning Syntax from Sentences - 3rd International Colloquium, ICGI-1996, Proceedings. de la Higuera, C. & Miclet, L. (eds.). Springer Verlag, p. 84-94 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1147).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 1995

    Genetic epidemiology, parallel algorithms, and workstation networks

    Chamberlain, R. D., Peterson, G. D., Franklin, M. A. & Province, M. A., 1995, Proceedings of the 28th Annual Hawaii International Conference on System Sciences, HICSS 1995. IEEE Computer Society, p. 101-111 11 p. 375346. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 5).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 1989

    Insulin receptor gene polymorphisms (RFLPs) in American Blacks and Pima Indians: an assessment of the use of RFLPs in evaluating a candidate locus for NIDDM

    Permutt, M. A., McGill, J., Elbein, S. C., Province, M. & Bogardus, C., 1989, Genes and gene products in the development of diabetes mellitus: proceedings of the 3rd Nordisk Insulin Symposium 'Genes ane gene products in the development of diabetes mellitus'. ICS866. Nerup, J., Mandrup-Poulsen, T., Hokfelt, B., Nerup, J., Mandrup-Poulsen, T. & Hokfelt, B. (eds.). Elsevier Science Publishers B.V., p. 249-262 14 p. (Genes and gene products in the development of diabetes mellitus: proceedings of the 3rd Nordisk Insulin Symposium 'Genes ane gene products in the development of diabetes mellitus'. ICS866).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations