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  • 2024

    DeST-OT: Alignment of Spatiotemporal Transcriptomics Data

    Halmos, P., Liu, X., Gold, J., Chen, F., Ding, L. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 434-437 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography from Spatially Resolved Transcriptomics

    Ma, C., Balaban, M., Liu, J., Chen, S., Ding, L. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 466-469 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2023

    Interpretable graph convolutional network enables triple negative breast cancer detection in imaging mass cytometry

    Lu, P., Oetjen, K. A. & Thorek, D. L. J., 2023, Medical Imaging 2023: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 124710C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12471).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2020

    Predicting breast cancer treatment response using diffuse optical tomography and ultrasound

    Zhu, Q., Poplack, S., Ademuyiwa, F. & Young, C., 2020, Optical Tomography and Spectroscopy, OTS 2020. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F179-OTS-2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2017

    Sn2 lipase labile prodrugs and contact-facilitated drug delivery for lipid-encapsulated nanomedicines

    Pan, D., Cui, G., Pham, C. T. N., Tomasson, M. H., Weilbaecher, K. N. & Lanza, G. M., 2017, Control of Amphiphile Self-Assembling at the Molecular Level: Supra-Molecular Assemblies with Tuned Physicochemical Properties for Delivery Applications. Ilies, M. A. (ed.). American Chemical Society, p. 189-209 21 p. (ACS Symposium Series; vol. 1271).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2016

    The Role of Neoantigens in Naturally Occurring and Therapeutically Induced Immune Responses to Cancer

    Ward, J. P., Gubin, M. M. & Schreiber, R. D., 2016, Tumor Immunology, 2016. Schreiber, R. D. (ed.). Academic Press Inc., p. 25-74 50 p. (Advances in Immunology; vol. 130).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    175 Scopus citations
  • 2015

    Mathematical models of tumor growth using Voronoi tessellations in pathology slides of kidney cancer

    Saribudak, A., Dong, Y., Gundry, S., Hsieh, J. & Uyar, M. U., Nov 4 2015, 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2015. Institute of Electrical and Electronics Engineers Inc., p. 4454-4457 4 p. 7319383. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2015-November).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    13 Scopus citations
  • 2013

    Evaluation of three vascular-targeted enzyme prodrug systems for breast cancer therapy

    Krais, J., Van Rite, B., Kurkjian, C. & Harrison, R., 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 223 1 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2010

    The HSC niche concept has turned 31: Has our knowledgematured?

    Lymperi, S., Ferraro, F. & Scadden, D. T., Mar 2010, Skeletal Biology and Medicine. Blackwell Publishing Inc., p. 12-18 7 p. (Annals of the New York Academy of Sciences; vol. 1192).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    82 Scopus citations
  • 2009

    A programmable implementation of neural signal processing on a smartdust for brain-computer interfaces

    Sun, Y., Huang, S., Oresko, J., Krais, J. & Cheng, A. C., 2009, ISLPED'09 - Proceedings of the 2009 ACM/IEEE International Symposium on Low Power Electronics and Design. p. 351-354 4 p. 1594320. (Proceedings of the International Symposium on Low Power Electronics and Design).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • KiWi: A scalable subspace clustering algorithm for gene expression analysis

    Griffith, O. L., Gao, B. J., Bilenky, M., Prychyna, Y., Ester, M. & Jones, S. J. M., 2009, 3rd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2009. 5163005. (3rd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    4 Scopus citations
  • 2006

    Discovering significant OPSM subspace clusters in massive gene expression data

    Gao, B. J., Griffith, O. L., Ester, M. & Jones, S. J. M., 2006, KDD 2006: Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery (ACM), p. 922-928 7 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; vol. 2006).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    23 Scopus citations
  • 2005

    cis-Regulatory element prediction in mammalian genomes

    Siddiqui, A., Robertson, G., Bilenky, M., Astakhova, T., Griffith, O. L., Hassel, M., Lin, K., Montgomery, S., Oveisi, M., Pleasance, E., Robertson, N., Sleumer, M. C., Teague, K., Varhol, R., Zhang, M. & Jones, S., 2005, 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. p. 203-206 4 p. 1540599. (2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2004

    A template-propagation method for segmentation of filamentous structures in electron tomograms

    Shen, W., Zhang, P., Germain, D., Rouault, T. & Subramaniam, S., 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano. p. 1-4 4 p. (2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Identifying microRNAs in plant genomes

    Maher, C., Timmermans, M., Stein, L. & Ware, D., Dec 1 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 718-723 6 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    16 Scopus citations