Division of Gastroenterology, Hepatology & Nutrition

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  • 2013

    Breast milk is better than formula milk in preventing parenteral nutrition-associated liver disease in infants receiving prolonged parenteral nutrition

    Kulkarni, S., Mercado, V., Rios, M., Arboleda, R., Gomara, R., Muinos, W., Reeves-Garcia, J. & Hernandez, E., Sep 2013, In: Journal of pediatric gastroenterology and nutrition. 57, 3, p. 383-388 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Characterization of the regulation and function of zinc-dependent histone deacetylases during rodent liver regeneration.

    Huang, J., Barr, E. & Rudnick, D. A., May 2013, In: Unknown Journal. 57, 5, p. 1742-1751 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    34 Scopus citations

  • Comparison of novel MLB-clade, VA-clade and classic human astroviruses highlights constrained evolution of the classic human astrovirus nonstructural genes

    Jiang, H., Holtz, L. R., Bauer, I., Franz, C. J., Zhao, G., Bodhidatta, L., Shrestha, S. K., Kang, G. & Wang, D., Feb 5 2013, In: Virology. 436, 1, p. 8-14 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    66 Scopus citations

  • Crescent and star shapes of members of the Chlamydiales order: Impact of fixative methods

    Rusconi, B., Lienard, J., Aeby, S., Croxatto, A., Bertelli, C. & Greub, G., Oct 2013, In: Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 104, 4, p. 521-532 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    16 Scopus citations

  • Detection of low-concentration host mRNA transcripts in Malawian children at risk for environmental enteropathy

    Manary, M., Agapova, S., Stephenson, K., Manary, M., Weisz, A., Tarr, P. I., Mkakosya, R., Maleta, K., Shulman, R. J. & Shaikh, N., Jan 2013, In: Journal of pediatric gastroenterology and nutrition. 56, 1, p. 66-71 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    20 Scopus citations

  • Discovery of catalases in members of the Chlamydiales order

    Rusconi, B. & Greub, G., 2013, In: Journal of bacteriology. 195, 16, p. 3543-3551 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • Dysregulation of angiopoietin 1 and 2 in escherichia coli O157:H7 Infection and the hemolytic-uremic syndrome

    Page, A. V., Tarr, P. I., Watkins, S. L., Rajwans, N., Petruzziello-Pellegrini, T. N., Marsden, P. A., Kain, K. C. & Conrad Liles, W., Sep 15 2013, In: Journal of Infectious Diseases. 208, 6, p. 929-933 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    28 Scopus citations

  • Extrahepatic anomalies in infants with biliary atresia: Results of a Large prospective North American multicenter study

    Schwarz, K. B., Haber, B. H., Rosenthal, P., Mack, C. L., Moore, J., Bove, K., Bezerra, J. A., Karpen, S. J., Kerkar, N., Shneider, B. L., Turmelle, Y. P., Whitington, P. F., Molleston, J. P., Murray, K. F., Ng, V. L., Romero, R., Wang, K. S., Sokol, R. J. & Magee, J. C., Nov 2013, In: Hepatology. 58, 5, p. 1724-1731 8 p.

    Research output: Contribution to journal › Article › peer-review

    127 Scopus citations

  • F11R Is a Novel Monocyte Prognostic Biomarker for Malignant Glioma

    Pong, W. W., Walker, J., Wylie, T., Magrini, V., Luo, J., Emnett, R. J., Choi, J., Cooper, M. L., Griffith, M., Griffith, O. L., Rubin, J. B., Fuller, G. N., Piwnica-Worms, D., Feng, X., Hambardzumyan, D., DiPersio, J. F., Mardis, E. R. & Gutmann, D. H., Oct 11 2013, In: PloS one. 8, 10, e77571.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    40 Scopus citations

  • Gastrointestinal viruses were not found as an aetiology of culture-negative illness in NICU patients

    Melamed, R., Storch, G. A., Warner, B. B. & Tarr, P. I., Jul 2013, In: Archives of Disease in Childhood: Fetal and Neonatal Edition. 98, 4, p. F374-F375

    Research output: Contribution to journal › Article › peer-review

  • Genomic impact of transient low-dose decitabine treatment on primary AMLcells

    Klco, J. M., Spencer, D. H., Lamprecht, T. L., Sarkaria, S. M., Wylie, T., Magrini, V., Hundal, J., Walker, J., Varghese, N., Erdmann-Gilmore, P., Lichti, C. F., Meyer, M. R., Townsend, R. R., Wilson, R. K., Mardis, E. R. & Ley, T. J., Feb 28 2013, In: Blood. 121, 9, p. 1633-1643 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    122 Scopus citations

  • Glucose transporter-8 (GLUT8) mediates glucose intolerance and dyslipidemia in high-fructose diet-fed male mice

    DeBosch, B. J., Chen, Z., Finck, B. N., Chi, M. & Moley, K. H., 2013, In: Molecular Endocrinology. 27, 11, p. 1887-1896 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    46 Scopus citations

  • Implications of acquired environmental enteric dysfunction for growth and stunting in infants and children living in low-and middle-income countries

    Keusch, G. T., Rosenberg, I. H., Denno, D. M., Duggan, C., Guerrant, R. L., Lavery, J. V., Tarr, P. I., Ward, H. D., Black, R. E., Nataro, J. P., Ryan, E. T., Bhutta, Z. A., Coovadia, H., Lima, A., Ramakrishna, B., Zaidi, A. K. M., Hay Burgess, D. C. & Brewer, T., Sep 2013, In: Food and nutrition bulletin. 34, 3, p. 357-364 8 p.

    Research output: Contribution to journal › Article › peer-review

    145 Scopus citations

  • Intestinal inflammatory biomarkers and outcome in pediatric clostridium difficile infections

    El Feghaly, R. E., Stauber, J. L., Tarr, P. I. & Haslam, D. B., Dec 2013, In: Journal of Pediatrics. 163, 6, p. 1697-1704.e2

    Research output: Contribution to journal › Article › peer-review

    60 Scopus citations

  • Intravenous N-acetylcysteine in pediatric patients with nonacetaminophen acute liver failure: A placebo-controlled clinical trial

    Squires, R. H., Dhawan, A., Alonso, E., Narkewicz, M. R., Shneider, B. L., Rodriguez-Baez, N., Olio, D. D., Karpen, S., Bucuvalas, J., Lobritto, S., Rand, E., Rosenthal, P., Horslen, S., Ng, V., Subbarao, G., Kerkar, N., Rudnick, D., Lopez, M. J., Schwarz, K. & Romero, R. & 5 others, Elisofon, S., Doo, E., Robuck, P. R., Lawlor, S. & Belle, S. H., Apr 2013, In: Hepatology. 57, 4, p. 1542-1549 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    156 Scopus citations

  • Markers of intestinal inflammation, not bacterial burden, correlate with clinical outcomes in clostridium difficile infection

    El Feghaly, R. E., Stauber, J. L., Deych, E., Gonzalez, C., Tarr, P. I. & Haslam, D. B., Jun 15 2013, In: Clinical Infectious Diseases. 56, 12, p. 1713-1721 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    154 Scopus citations

  • Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes

    Moore, A. M., Patel, S., Forsberg, K. J., Wang, B., Bentley, G., Razia, Y., Qin, X., Tarr, P. I. & Dantas, G., Nov 13 2013, In: PloS one. 8, 11, e78822.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    144 Scopus citations

  • Precise dissection of an escherichia coli o157:H7 outbreak by single nucleotide polymorphism analysis

    Turabelidze, G., Lawrence, S. J., Gao, H., Sodergren, E., Weinstock, G. M., Abubucker, S., Wylie, T., Mitreva, M., Shaikh, N., Gautom, R. & Tarr, P. I., Dec 2013, In: Journal of clinical microbiology. 51, 12, p. 3950-3954 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    35 Scopus citations

  • Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

    Gutmann, D. H., McLellan, M. D., Hussain, I., Wallis, J. W., Fulton, L. L., Fulton, R. S., Magrini, V., Demeter, R., Wylie, T., Kandoth, C., Leonard, J. R., Guha, A., Miller, C. A., Ding, L. & Mardis, E. R., Mar 2013, In: Genome research. 23, 3, p. 431-439 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    110 Scopus citations

  • Targeted Deletion of Fibrinogen Like Protein 1 Reveals a Novel Role in Energy Substrate Utilization

    Demchev, V., Malana, G., Vangala, D., Stoll, J., Desai, A., Kang, H. W., Li, Y., Nayeb-Hashemi, H., Niepel, M., Cohen, D. E. & Ukomadu, C., Mar 6 2013, In: PloS one. 8, 3, e58084.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    71 Scopus citations

  • The cancer genome atlas pan-cancer analysis project

    Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R. M., Ozenberger, B. A., Ellrott, K., Sander, C., Stuart, J. M., Chang, K., Creighton, C. J., Davis, C., Donehower, L., Drummond, J., Wheeler, D., Ally, A., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chu, A. & Chuah, E. & 316 others, Chun, H. J. E., Dhalla, N., Guin, R., Hirst, M., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Robertson, A. G., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Varhol, R. J., Beroukhim, R., Bhatt, A. S., Brooks, A. N., Cherniack, A. D., Freeman, S. S., Gabriel, S. B., Helman, E., Jung, J., Meyerson, M., Ojesina, A. I., Pedamallu, C. S., Saksena, G., Schumacher, S. E., Tabak, B., Zack, T., Lander, E. S., Bristow, C. A., Hadjipanayis, A., Haseley, P., Kucherlapati, R., Lee, S., Lee, E., Luquette, L. J., Mahadeshwar, H. S., Pantazi, A., Parfenov, M., Park, P. J., Protopopov, A., Ren, X., Santoso, N., Seidman, J., Seth, S., Song, X., Tang, J., Xi, R., Xu, A. W., Yang, L., Zeng, D., Auman, J. T., Balu, S., Buda, E., Fan, C., Hoadley, K. A., Jones, C. D., Meng, S., Mieczkowski, P. A., Parker, J. S., Perou, C. M., Roach, J., Shi, Y., Silva, G. O., Tan, D., Veluvolu, U., Waring, S., Wilkerson, M. D., Wu, J., Zhao, W., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jeffreys, S. R., Mose, L. E., Simons, J. V., Soloway, M. G., Baylin, S. B., Berman, B. P., Bootwalla, M. S., Danilova, L., Herman, J. G., Hinoue, T., Laird, P. W., Rhie, S. K., Shen, H., Triche, T., Weisenberger, D. J., Carter, S. L., Cibulskis, K., Chin, L., Zhang, J., Sougnez, C., Wang, M., Getz, G., Dinh, H., Doddapaneni, H. V., Gibbs, R., Gunaratne, P., Han, Y., Kalra, D., Kovar, C., Lewis, L., Morgan, M., Morton, D., Muzny, D., Reid, J., Xi, L., Cho, J., Dicara, D., Frazer, S., Gehlenborg, N., Heiman, D. I., Kim, J., Lawrence, M. S., Lin, P., Liu, Y., Noble, M. S., Stojanov, P., Voet, D., Zhang, H., Zou, L., Stewart, C., Bernard, B., Bressler, R., Eakin, A., Iype, L., Knijnenburg, T., Kramer, R., Kreisberg, R., Leinonen, K., Lin, J., Liu, Y., Miller, M., Reynolds, S. M., Rovira, H., Shmulevich, I., Thorsson, V., Yang, D., Zhang, W., Amin, S., Wu, C. J., Wu, C. C., Akbani, R., Aldape, K., Baggerly, K. A., Broom, B., Casasent, T. D., Cleland, J., Dodda, D., Edgerton, M., Han, L., Herbrich, S. M., Ju, Z., Kim, H., Lerner, S., Li, J., Liang, H., Liu, W., Lorenzi, P. L., Lu, Y., Melott, J., Nguyen, L., Su, X., Verhaak, R., Wang, W., Wong, A., Yang, Y., Yao, J., Yao, R., Yoshihara, K., Yuan, Y., Yung, A. K., Zhang, N., Zheng, S., Ryan, M., Kane, D. W., Aksoy, B. A., Ciriello, G., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Kahles, A., Ladanyi, M., Lee, W., Lehmann, K. V., Miller, M. L., Ramirez, R., Rätsch, G., Reva, B., Schultz, N., Senbabaoglu, Y., Shen, R., Sinha, R., Sumer, S. O., Sun, Y., Taylor, B. S., Weinhold, N., Fei, S., Spellman, P., Benz, C., Carlin, D., Cline, M., Craft, B., Goldman, M., Haussler, D., Ma, S., Ng, S., Paull, E., Radenbaugh, A., Salama, S., Sokolov, A., Swatloski, T., Uzunangelov, V., Waltman, P., Yau, C., Zhu, J., Hamilton, S. R., Abbott, S., Abbott, R., Dees, N. D., Delehaunty, K., Ding, L., Dooling, D. J., Eldred, J. M., Fronick, C. C., Fulton, R., Fulton, L. L., Kalicki-Veizer, J., Kanchi, K. L., Kandoth, C., Koboldt, D. C., Larson, D. E., Ley, T. J., Lin, L., Lu, C., Magrini, V. J., Mardis, E. R., McLellan, M. D., McMichael, J. F., Miller, C. A., O'Laughlin, M., Pohl, C., Schmidt, H., Smith, S. M., Walker, J., Wallis, J. W., Wendl, M. C., Wilson, R. K., Wylie, T., Zhang, Q., Burton, R., Jensen, M. A., Kahn, A., Pihl, T., Pot, D., Wan, Y., Levine, D. A., Black, A. D., Bowen, J., Frick, J., Gastier-Foster, J. M., Harper, H. A., Helsel, C., Leraas, K. M., Lichtenberg, T. M., McAllister, C., Ramirez, N. C., Sharpe, S., Wise, L., Zmuda, E., Chanock, S. J., Davidsen, T., Demchok, J. A., Eley, G., Felau, I., Sheth, M., Sofia, H., Staudt, L., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Omberg, L., Margolin, A., Raphael, B. J., Vandin, F., Wu, H. T., Leiserson, M. D. M., Benz, S. C., Vaske, C. J., Noushmehr, H., Wolf, D., Veer, L. V. T., Anastassiou, D., Yang, T. H. O., Lopez-Bigas, N., Gonzalez-Perez, A., Tamborero, D., Xia, Z., Li, W., Cho, D. Y., Przytycka, T., Hamilton, M., McGuire, S., Nelander, S., Johansson, P., Jörnsten, R. & Kling, T., Oct 1 2013, In: Nature Genetics. 45, 10, p. 1113-1120 8 p.

    Research output: Contribution to journal › Article › peer-review

    6111 Scopus citations

  • Use and accuracy of diagnostic imaging by hospital type in pediatric appendicitis

    Saito, J. M., Yan, Y., Evashwick, T. W., Warner, B. W. & Tarr, P. I., Jan 2013, In: Pediatrics. 131, 1, p. e37-e44

    Research output: Contribution to journal › Article › peer-review

    Open Access
    86 Scopus citations

  • Validation of the modified vesikari score in children with gastroenteritis in 5 US emergency departments

    Schnadower, D., Tarr, P. I., Gorelick, M. H., O'Connell, K., Roskind, C. G., Powell, E. C., Rao, J., Bhatt, S. & Freedman, S. B., Oct 2013, In: Journal of pediatric gastroenterology and nutrition. 57, 4, p. 514-519 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    84 Scopus citations

  • Viral co-infections are common and are associated with higher bacterial burden in children with clostridium difficile infection

    Feghaly, R. E. E., Stauber, J. L., Tarr, P. I. & Haslam, D. B., Dec 2013, In: Journal of pediatric gastroenterology and nutrition. 57, 6, p. 813-816 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    28 Scopus citations

  • Whole-genome draft sequences of 26 enterohemorrhagic Escherichia coli O157:H7 strains

    Eppinger, M., Daugherty, S., Agrawal, S., Galens, K., Sengamalay, N., Sadzewicz, L., Tallon, L., Cebula, T. A., Mammel, M. K., Feng, P., Soderlund, R., Tarr, P. I., DebRoy, C., Dudley, E. G., Fraser, C. M. & Ravel, J., 2013, In: Genome Announcements. 1, 2, e00134-12.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    16 Scopus citations
  • 2012

    A framework for human microbiome research

    Methé, B. A., Nelson, K. E., Pop, M., Creasy, H. H., Giglio, M. G., Huttenhower, C., Gevers, D., Petrosino, J. F., Abubucker, S., Badger, J. H., Chinwalla, A. T., Earl, A. M., Fitzgerald, M. G., Fulton, R. S., Hallsworth-Pepin, K., Lobos, E. A., Madupu, R., Magrini, V., Martin, J. C. & Mitreva, M. & 228 others, Muzny, D. M., Sodergren, E. J., Versalovic, J., Wollam, A. M., Worley, K. C., Wortman, J. R., Young, S. K., Zeng, Q., Aagaard, K. M., Abolude, O. O., Allen-Vercoe, E., Alm, E. J., Alvarado, L., Andersen, G. L., Anderson, S., Appelbaum, E., Arachchi, H. M., Armitage, G., Arze, C. A., Ayvaz, T., Baker, C. C., Begg, L., Belachew, T., Bhonagiri, V., Bihan, M., Blaser, M. J., Bloom, T., Bonazzi, V. R., Brooks, P., Buck, G. A., Buhay, C. J., Busam, D. A., Campbell, J. L., Canon, S. R., Cantarel, B. L., Chain, P. S., Chen, I. M. A., Chen, L., Chhibba, S., Chu, K., Ciulla, D. M., Clemente, J. C., Clifton, S. W., Conlan, S., Crabtree, J., Cutting, M. A., Davidovics, N. J., Davis, C. C., Desantis, T. Z., Deal, C., Delehaunty, K. D., Dewhirst, F. E., Deych, E., Ding, Y., Dooling, D. J., Dugan, S. P., Michael Dunne, W., Scott Durkin, A., Edgar, R. C., Erlich, R. L., Farmer, C. N., Farrell, R. M., Faust, K., Feldgarden, M., Felix, V. M., Fisher, S., Fodor, A. A., Forney, L., Foster, L., Di Francesco, V., Friedman, J., Friedrich, D. C., Fronick, C. C., Fulton, L. L., Gao, H., Garcia, N., Giannoukos, G., Giblin, C., Giovanni, M. Y., Goldberg, J. M., Goll, J., Gonzalez, A., Griggs, A., Gujja, S., Haas, B. J., Hamilton, H. A., Harris, E. L., Hepburn, T. A., Herter, B., Hoffmann, D. E., Holder, M. E., Howarth, C., Huang, K. H., Huse, S. M., Izard, J., Jansson, J. K., Jiang, H., Jordan, C., Joshi, V., Katancik, J. A., Keitel, W. A., Kelley, S. T., Kells, C., Kinder-Haake, S., King, N. B., Knight, R., Knights, D., Kong, H. H., Koren, O., Koren, S., Kota, K. C., Kovar, C. L., Kyrpides, N. C., La Rosa, P. S., Lee, S. L., Lemon, K. P., Lennon, N., Lewis, C. M., Lewis, L., Ley, R. E., Li, K., Liolios, K., Liu, B., Liu, Y., Lo, C. C., Lozupone, C. A., Dwayne Lunsford, R., Madden, T., Mahurkar, A. A., Mannon, P. J., Mardis, E. R., Markowitz, V. M., Mavrommatis, K., McCorrison, J. M., McDonald, D., McEwen, J., McGuire, A. L., McInnes, P., Mehta, T., Mihindukulasuriya, K. A., Miller, J. R., Minx, P. J., Newsham, I., Nusbaum, C., O'Laughlin, M., Orvis, J., Pagani, I., Palaniappan, K., Patel, S. M., Pearson, M., Peterson, J., Podar, M., Pohl, C., Pollard, K. S., Priest, M. E., Proctor, L. M., Qin, X., Raes, J., Ravel, J., Reid, J. G., Rho, M., Rhodes, R., Riehle, K. P., Rivera, M. C., Rodriguez-Mueller, B., Rogers, Y. H., Ross, M. C., Russ, C., Sanka, R. K., Sankar, P., Fah Sathirapongsasuti, J., Schloss, J. A., Schloss, P. D., Schmidt, T. M., Scholz, M., Schriml, L., Schubert, A. M., Segata, N., Segre, J. A., Shannon, W. D., Sharp, R. R., Sharpton, T. J., Shenoy, N., Sheth, N. U., Simone, G. A., Singh, I., Smillie, C. S., Sobel, J. D., Sommer, D. D., Spicer, P., Sutton, G. G., Sykes, S. M., Tabbaa, D. G., Thiagarajan, M., Tomlinson, C. M., Torralba, M., Treangen, T. J., Truty, R. M., Vishnivetskaya, T. A., Walker, J., Wang, L., Wang, Z., Ward, D. V., Warren, W., Watson, M. A., Wellington, C., Wetterstrand, K. A., White, J. R., Wilczek-Boney, K., Qing Wu, Y., Wylie, K. M., Wylie, T., Yandava, C., Ye, L., Ye, Y., Yooseph, S., Youmans, B. P., Zhang, L., Zhou, Y., Zhu, Y., Zoloth, L., Zucker, J. D., Birren, B. W., Gibbs, R. A., Highlander, S. K., Weinstock, G. M., Wilson, R. K. & White, O., Jun 14 2012, In: Nature. 486, 7402, p. 215-221 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2094 Scopus citations

  • Analysis of the role of hepatic PPARγ expression during mouse liver regeneration

    Gazit, V., Huang, J., Weymann, A. & Rudnick, D. A., Oct 2012, In: Hepatology. 56, 4, p. 1489-1498 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    37 Scopus citations

  • Budesonide use in pediatric crohn disease

    Otley, A., Leleiko, N., Langton, C., Lerer, T., MacK, D., Evans, J., Pfefferkorn, M., Carvalho, R., Rosh, J., Griffiths, A., Oliva-Hemker, M., Kay, M., Bousvaros, A., Stephens, M., Samson, C., Grossman, A., Keljo, D., Markowitz, J. & Hyams, J., Aug 2012, In: Journal of pediatric gastroenterology and nutrition. 55, 2, p. 200-204 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    8 Scopus citations

  • Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting

    Matsushita, H., Vesely, M. D., Koboldt, D. C., Rickert, C. G., Uppaluri, R., Magrini, V. J., Arthur, C. D., White, J. M., Chen, Y. S., Shea, L. K., Hundal, J., Wendl, M. C., Demeter, R., Wylie, T., Allison, J. P., Smyth, M. J., Old, L. J., Mardis, E. R. & Schreiber, R. D., Feb 16 2012, In: Nature. 482, 7385, p. 400-404 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1059 Scopus citations

  • Comprehensive molecular characterization of human colon and rectal cancer

    Muzny, D. M., Bainbridge, M. N., Chang, K., Dinh, H. H., Drummond, J. A., Fowler, G., Kovar, C. L., Lewis, L. R., Morgan, M. B., Newsham, I. F., Reid, J. G., Santibanez, J., Shinbrot, E., Trevino, L. R., Wu, Y. Q., Wang, M., Gunaratne, P., Donehower, L. A., Creighton, C. J. & Wheeler, D. A. & 293 others, Gibbs, R. A., Lawrence, M. S., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E. S., Gabriel, S., Ding, L., Fulton, R. S., Koboldt, D. C., Wylie, T., Walker, J., Dooling, D. J., Fulton, L., Delehaunty, K. D., Fronick, C. C., Demeter, R., Mardis, E. R., Wilson, R. K., Chu, A., Chun, H. J. E., Mungall, A. J., Pleasance, E., Gordon Robertson, A., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chuah, E., Coope, R. J. N., Dhalla, N., Guin, R., Hirst, C., Hirst, M., Holt, R. A., Lee, D., Li, H. I., Mayo, M., Moore, R. A., Schein, J. E., Slobodan, J. R., Tam, A., Thiessen, N., Varhol, R., Zeng, T., Zhao, Y., Jones, S. J. M., Marra, M. A., Bass, A. J., Ramos, A. H., Saksena, G., Cherniack, A. D., Schumacher, S. E., Tabak, B., Carter, S. L., Pho, N. H., Nguyen, H., Onofrio, R. C., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Meyerson, M., Protopopov, A., Hadjipanayis, A., Lee, E., Xi, R., Yang, L., Ren, X., Sathiamoorthy, N., Chen, P. C., Haseley, P., Xiao, Y., Lee, S., Seidman, J., Chin, L., Park, P. J., Kucherlapati, R., Todd Auman, J., Hoadley, K. A., Du, Y., Wilkerson, M. D., Shi, Y., Liquori, C., Meng, S., Li, L., Turman, Y. J., Topal, M. D., Tan, D., Waring, S., Buda, E., Walsh, J., Jones, C. D., Mieczkowski, P. A., Singh, D., Wu, J., Gulabani, A., Dolina, P., Bodenheimer, T., Hoyle, A. P., Simons, J. V., Soloway, M., Mose, L. E., Jefferys, S. R., Balu, S., O'Connor, B. D., Prins, J. F., Chiang, D. Y., Neil Hayes, D., Perou, C. M., Hinoue, T., Weisenberger, D. J., Maglinte, D. T., Pan, F., Berman, B. P., Van Den Berg, D. J., Shen, H., Triche, T., Baylin, S. B., Laird, P. W., Getz, G., Noble, M., Voat, D., Gehlenborg, N., Dicara, D., Zhang, J., Zhang, H., Wu, C. J., Liu, S. Y., Shukla, S., Zhou, L., Lin, P., Park, R. W., Nazaire, M. D., Robinson, J., Thorvaldsdottir, H., Mesirov, J., Thorsson, V., Reynolds, S. M., Bernard, B., Kreisberg, R., Lin, J., Iype, L., Bressler, R., Erkkilä, T., Gundapuneni, M., Liu, Y., Norberg, A., Robinson, T., Yang, D., Zhang, W., Shmulevich, I., De Ronde, J. J., Schultz, N., Cerami, E., Ciriello, G., Goldberg, A. P., Gross, B., Jacobsen, A., Gao, J., Kaczkowski, B., Sinha, R., Arman Aksoy, B., Antipin, Y., Reva, B., Shen, R., Taylor, B. S., Ladanyi, M., Sander, C., Akbani, R., Zhang, N., Broom, B. M., Casasent, T., Unruh, A., Wakefield, C., Hamilton, S. R., Craig Cason, R., Baggerly, K. A., Weinstein, J. N., Haussler, D., Benz, C. C., Stuart, J. M., Benz, S. C., Zachary Sanborn, J., Vaske, C. J., Zhu, J., Szeto, C., Scott, G. K., Yau, C., Ng, S., Goldstein, T., Ellrott, K., Collisson, E., Cozen, A. E., Zerbino, D., Wilks, C., Craft, B., Spellman, P., Penny, R., Shelton, T., Hatfield, M., Morris, S., Yena, P., Shelton, C., Sherman, M., Paulauskis, J., Gastier-Foster, J. M., Bowen, J., Ramirez, N. C., Black, A., Pyatt, R., Wise, L., White, P., Bertagnolli, M., Brown, J., Chan, T. A., Chu, G. C., Czerwinski, C., Denstman, F., Dhir, R., Dörner, A., Fuchs, C. S., Guillem, J. G., Iacocca, M., Juhl, H., Kaufman, A., Iii, B. K., Van Le, X., Mariano, M. C., Medina, E. N., Meyers, M., Nash, G. M., Paty, P. B., Petrelli, N., Rabeno, B., Richards, W. G., Solit, D., Swanson, P., Temple, L., Tepper, J. E., Thorp, R., Vakiani, E., Weiser, M. R., Willis, J. E., Witkin, G., Zeng, Z., Zinner, M. J., Zornig, C., Jensen, M. A., Sfeir, R., Kahn, A. B., Chu, A. L., Kothiyal, P., Wang, Z., Snyder, E. E., Pontius, J., Pihl, T. D., Ayala, B., Backus, M., Walton, J., Whitmore, J., Baboud, J., Berton, D. L., Nicholls, M. C., Srinivasan, D., Raman, R., Girshik, S., Kigonya, P. A., Alonso, S., Sanbhadti, R. N., Barletta, S. P., Greene, J. M., Pot, D. A., Shaw, K. R. M., Dillon, L. A. L., Buetow, K., Davidsen, T., Demchok, J. A., Eley, G., Ferguson, M., Fielding, P., Schaefer, C., Sheth, M., Yang, L., Guyer, M. S., Ozenberger, B. A., Palchik, J. D., Peterson, J., Sofia, H. J. & Thomson., E., Jul 19 2012, In: Nature. 487, 7407, p. 330-337 8 p.

    Research output: Contribution to journal › Article › peer-review

    6903 Scopus citations

  • Diarrhea etiology in a pediatric emergency department: A case control study

    Denno, D. M., Shaikh, N., Stapp, J. R., Qin, X., Hutter, C. M., Hoffman, V., Mooney, J. C., Wood, K. M., Stevens, H. J., Jones, R., Tarr, P. I. & Klein, E. J., Oct 1 2012, In: Clinical Infectious Diseases. 55, 7, p. 897-904 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    106 Scopus citations

  • Efficacy of fat-soluble vitamin supplementation in infants with biliary atresia

    Shneider, B. L., Magee, J. C., Bezerra, J. A., Haber, B., Karpen, S. J., Raghunathan, T., Rosenthal, P., Schwarz, K., Suchy, F. J., Kerkar, N., Turmelle, Y., Whitington, P. F., Robuck, P. R. & Sokol, R. J., Sep 2012, In: Pediatrics. 130, 3, p. e607-e614

    Research output: Contribution to journal › Article › peer-review

    92 Scopus citations

  • Experiences from the shiga toxin-producing escherichia coli O104:H4 outbreak in Germany and research needs in the field, Berlin, 28-29 November 2011

    Stark, K., Bauerfeind, R., Bernard, H., Eckmanns, T., Ethelberg, S., Flieger, A., Giesecke, J., Greiner, M., Karch, H., Krause, G., Mielke, M., O'Brien, S. J., Pulz, M., Scheutz, F., Schielke, A., Stahl, R. A., Takkinen, J., Tarr, P. I., Tauxe, R. V. & Werber, D., Feb 2012, In: Eurosurveillance. 17, 7

    Research output: Contribution to journal › Article › peer-review

    2 Scopus citations

  • Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing

    Dittmar, K. A., Jiang, P., Park, J. W., Amirikian, K., Wan, J., Shen, S., Xing, Y. & Carstens, R. P., Apr 2012, In: Molecular and cellular biology. 32, 8, p. 1468-1482 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    116 Scopus citations

  • Giant cell hepatitis and immune thrombocytopenic purpura: Reversal of liver failure with rituximab therapy

    Shores, D., Kobak, G., Pegram, L. D., Whitington, P. F. & Shneider, B. L., Oct 2012, In: Journal of pediatric gastroenterology and nutrition. 55, 4, p. e128-e130

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations

  • Glucose transporter 8 (GLUT8) regulates enterocyte fructose transport and global mammalian fructose utilization

    DeBosch, B. J., Chi, M. & Moley, K. H., Sep 1 2012, In: Endocrinology. 153, 9, p. 4181-4191 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    60 Scopus citations

  • Human polyomaviruses in children undergoing transplantation, United States, 2008-2010

    Siebrasse, E. A., Bauer, I., Holtz, L. R., Le, B. M., Lassa-Claxton, S., Canter, C., Hmiel, P., Shenoy, S., Sweet, S., Turmelle, Y., Shepherd, R. & Wang, D., Oct 2012, In: Emerging Infectious Diseases. 18, 10, p. 1676-1679 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    44 Scopus citations

  • Improved outcomes with quality improvement interventions in pediatric inflammatory bowel disease

    Samson, C. M., Morgan, P., Williams, E., Beck, L., Addie-Carson, R. J., Mcintire, S., Booth, A., Mendez, E., Luzader, C., Tomer, G., Saeed, S., Donovan, E., Bucuvalas, J. & Denson, L. A., Dec 2012, In: Journal of pediatric gastroenterology and nutrition. 55, 6, p. 679-688 10 p.

    Research output: Contribution to journal › Article › peer-review

    32 Scopus citations

  • Mapping the Anopheles gambiae odorant binding protein 1 (AgamOBP1) using modeling techniques, site directed mutagenesis, circular dichroism and ligand binding assays

    Rusconi, B., Maranhao, A. C., Fuhrer, J. P., Krotee, P., Choi, S. H., Grun, F., Thireou, T., Dimitratos, S. D., Woods, D. F., Marinotti, O., Walter, M. F. & Eliopoulos, E., Aug 2012, In: Biochimica et Biophysica Acta - Proteins and Proteomics. 1824, 8, p. 947-953 7 p.

    Research output: Contribution to journal › Article › peer-review

    15 Scopus citations

  • Neonatal cholestasis: Opportunities to increase early detection

    Palermo, J. J., Joerger, S., Turmelle, Y., Putnam, P. & Garbutt, J., Jul 2012, In: Academic Pediatrics. 12, 4, p. 283-287 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    8 Scopus citations

  • Portal hypertension in children and young adults with biliary atresia

    Shneider, B. L., Abel, B., Haber, B., Karpen, S. J., Magee, J. C., Romero, R., Schwarz, K., Bass, L. M., Kerkar, N., Miethke, A. G., Rosenthal, P., Turmelle, Y., Robuck, P. R. & Sokol, R. J., Nov 2012, In: Journal of pediatric gastroenterology and nutrition. 55, 5, p. 567-573 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    93 Scopus citations

  • Risk factors for the hemolytic uremic syndrome in children infected with escherichia coli O157:H7: A multivariable analysis

    Wong, C. S., Mooney, J. C., Brandt, J. R., Staples, A. O., Jelacic, S., Boster, D. R., Watkins, S. L. & Tarr, P. I., Jul 2012, In: Clinical Infectious Diseases. 55, 1, p. 33-41 9 p.

    Research output: Contribution to journal › Article › peer-review

    216 Scopus citations

  • Structure, function and diversity of the healthy human microbiome

    Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., Creasy, H. H., Earl, A. M., Fitzgerald, M. G., Fulton, R. S., Giglio, M. G., Hallsworth-Pepin, K., Lobos, E. A., Madupu, R., Magrini, V., Martin, J. C., Mitreva, M., Muzny, D. M., Sodergren, E. J. & Versalovic, J. & 228 others, Wollam, A. M., Worley, K. C., Wortman, J. R., Young, S. K., Zeng, Q., Aagaard, K. M., Abolude, O. O., Allen-Vercoe, E., Alm, E. J., Alvarado, L., Andersen, G. L., Anderson, S., Appelbaum, E., Arachchi, H. M., Armitage, G., Arze, C. A., Ayvaz, T., Baker, C. C., Begg, L., Belachew, T., Bhonagiri, V., Bihan, M., Blaser, M. J., Bloom, T., Bonazzi, V., Paul Brooks, J., Buck, G. A., Buhay, C. J., Busam, D. A., Campbell, J. L., Canon, S. R., Cantarel, B. L., Chain, P. S. G., Chen, I. M. A., Chen, L., Chhibba, S., Chu, K., Ciulla, D. M., Clemente, J. C., Clifton, S. W., Conlan, S., Crabtree, J., Cutting, M. A., Davidovics, N. J., Davis, C. C., Desantis, T. Z., Deal, C., Delehaunty, K. D., Dewhirst, F. E., Deych, E., Ding, Y., Dooling, D. J., Dugan, S. P., Michael Dunne, W., Scott Durkin, A., Edgar, R. C., Erlich, R. L., Farmer, C. N., Farrell, R. M., Faust, K., Feldgarden, M., Felix, V. M., Fisher, S., Fodor, A. A., Forney, L. J., Foster, L., Di Francesco, V., Friedman, J., Friedrich, D. C., Fronick, C. C., Fulton, L. L., Gao, H., Garcia, N., Giannoukos, G., Giblin, C., Giovanni, M. Y., Goldberg, J. M., Goll, J., Gonzalez, A., Griggs, A., Gujja, S., Kinder Haake, S., Haas, B. J., Hamilton, H. A., Harris, E. L., Hepburn, T. A., Herter, B., Hoffmann, D. E., Holder, M. E., Howarth, C., Huang, K. H., Huse, S. M., Izard, J., Jansson, J. K., Jiang, H., Jordan, C., Joshi, V., Katancik, J. A., Keitel, W. A., Kelley, S. T., Kells, C., King, N. B., Knights, D., Kong, H. H., Koren, O., Koren, S., Kota, K. C., Kovar, C. L., Kyrpides, N. C., La Rosa, P. S., Lee, S. L., Lemon, K. P., Lennon, N., Lewis, C. M., Lewis, L., Ley, R. E., Li, K., Liolios, K., Liu, B., Liu, Y., Lo, C. C., Lozupone, C. A., Dwayne Lunsford, R., Madden, T., Mahurkar, A. A., Mannon, P. J., Mardis, E. R., Markowitz, V. M., Mavromatis, K., McCorrison, J. M., McDonald, D., McEwen, J., McGuire, A. L., McInnes, P., Mehta, T., Mihindukulasuriya, K. A., Miller, J. R., Minx, P. J., Newsham, I., Nusbaum, C., Oglaughlin, M., Orvis, J., Pagani, I., Palaniappan, K., Patel, S. M., Pearson, M., Peterson, J., Podar, M., Pohl, C., Pollard, K. S., Pop, M., Priest, M. E., Proctor, L. M., Qin, X., Raes, J., Ravel, J., Reid, J. G., Rho, M., Rhodes, R., Riehle, K. P., Rivera, M. C., Rodriguez-Mueller, B., Rogers, Y. H., Ross, M. C., Russ, C., Sanka, R. K., Sankar, P., Fah Sathirapongsasuti, J., Schloss, J. A., Schloss, P. D., Schmidt, T. M., Scholz, M., Schriml, L., Schubert, A. M., Segata, N., Segre, J. A., Shannon, W. D., Sharp, R. R., Sharpton, T. J., Shenoy, N., Sheth, N. U., Simone, G. A., Singh, I., Smillie, C. S., Sobel, J. D., Sommer, D. D., Spicer, P., Sutton, G. G., Sykes, S. M., Tabbaa, D. G., Thiagarajan, M., Tomlinson, C. M., Torralba, M., Treangen, T. J., Truty, R. M., Vishnivetskaya, T. A., Walker, J., Wang, L., Wang, Z., Ward, D. V., Warren, W., Watson, M. A., Wellington, C., Wetterstrand, K. A., White, J. R., Wilczek-Boney, K., Wu, Y., Wylie, K. M., Wylie, T., Yandava, C., Ye, L., Ye, Y., Yooseph, S., Youmans, B. P., Zhang, L., Zhou, Y., Zhu, Y., Zoloth, L., Zucker, J. D., Birren, B. W., Gibbs, R. A., Highlander, S. K., Methé, B. A., Nelson, K. E., Petrosino, J. F., Weinstock, G. M., Wilson, R. K. & White, O., Jun 14 2012, In: Nature. 486, 7402, p. 207-214 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    8993 Scopus citations

  • The CXCR4/CXCR7/SDF-1 pathway contributes to the pathogenesis of Shiga toxin-associated hemolytic uremic syndrome in humans and mice

    Petruzziello-Pellegrini, T. N., Yuen, D. A., Page, A. V., Patel, S., Soltyk, A. M., Matouk, C. C., Wong, D. K., Turgeon, P. J., Fish, J. E., Ho, J. J. D., Steer, B. M., Khajoee, V., Tigdi, J., Lee, W. L., Motto, D. G., Advani, A., Gilbert, R. E., Karumanchi, S. A., Robinson, L. A. & Tarr, P. I. & 3 others, Liles, W. C., Brunton, J. L. & Marsden, P. A., Feb 2012, In: Journal of Clinical Investigation. 122, 2, p. 759-776 18 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    80 Scopus citations

  • The influence of skeletal muscle on the regulation of liver:Body mass and liver regeneration

    Huang, J., Glauber, M., Qiu, Z., Gazit, V., Dietzen, D. J. & Rudnick, D. A., Feb 2012, In: American Journal of Pathology. 180, 2, p. 575-582 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • The origin and evolution of mutations in acute myeloid leukemia

    Welch, J. S., Ley, T. J., Link, D. C., Miller, C. A., Larson, D. E., Koboldt, D. C., Wartman, L. D., Lamprecht, T. L., Liu, F., Xia, J., Kandoth, C., Fulton, R. S., McLellan, M. D., Dooling, D. J., Wallis, J. W., Chen, K., Harris, C. C., Schmidt, H. K., Kalicki-Veizer, J. M. & Lu, C. & 34 others, Zhang, Q., Lin, L., O'Laughlin, M. D., McMichael, J. F., Delehaunty, K. D., Fulton, L. A., Magrini, V. J., McGrath, S. D., Demeter, R. T., Vickery, T. L., Hundal, J., Cook, L. L., Swift, G. W., Reed, J. P., Alldredge, P. A., Wylie, T. N., Walker, J. R., Watson, M. A., Heath, S. E., Shannon, W. D., Varghese, N., Nagarajan, R., Payton, J. E., Baty, J. D., Kulkarni, S., Klco, J. M., Tomasson, M. H., Westervelt, P., Walter, M. J., Graubert, T. A., Dipersio, J. F., Ding, L., Mardis, E. R. & Wilson, R. K., Jul 20 2012, In: Cell. 150, 2, p. 264-278 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1328 Scopus citations
  • 2011

    Antibodies associated with heparin-induced thrombocytopenia (HIT) inhibit activated protein C generation: New insights into the prothrombotic nature of HIT

    Kowalska, M. A., Krishnaswamy, S., Rauova, L., Zhai, L., Hayes, V., Amirikian, K., Esko, J. D., Bougie, D. W., Aster, R. H., Cines, D. B. & Poncz, M., Sep 8 2011, In: Blood. 118, 10, p. 2882-2888 7 p.

    Research output: Contribution to journal › Article › peer-review

    30 Scopus citations

  • Astrovirus MLB1 is not associated with diarrhea in a cohort of Indian children

    Holtz, L. R., Bauer, I. K., Rajendran, P., Kang, G. & Wang, D., Dec 9 2011, In: PloS one. 6, 12, e28647.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    53 Scopus citations

  • Astrovirus MLB2 Viremia in febrile child

    Holtz, L. R., Wylie, K. M., Sodergren, E., Jiang, Y., Franz, C. J., Weinstock, G. M., Storch, G. A. & Wang, D., Nov 2011, In: Emerging Infectious Diseases. 17, 11, p. 2050-2052 3 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    58 Scopus citations

  • Bacterial DNA content in the intestinal wall from infants with necrotizing enterocolitis

    Bucher, B. T., McDuffie, L. A., Shaikh, N., Tarr, P. I., Warner, B. B., Hamvas, A., White, F. V., Erwin, C. R. & Warner, B. W., Jun 2011, In: Journal of Pediatric Surgery. 46, 6, p. 1029-1033 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    11 Scopus citations