Division of Cancer Biology

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  • 2024

    Self-supervised learning based on StyleGAN for medical image classification on small labeled dataset

    Fan, Z., Wang, Z., Zhang, C., Özbey, M., Villa, U., Hao, Y., Zhang, Z., Wang, X. & Li, H., 2024, Medical Imaging 2024: Image Processing. Colliot, O. & Mitra, J. (eds.). SPIE, 1292630. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12926).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Transformer-based classifier with feature aggregation for cancer subtype classification on histopathological images

    Zhang, C., Fan, Z., Wang, Z., Sun, L., Hao, Y., Zhang, Z., Thorstad, W., Gay, H., Wang, X., Anastasio, M. A. & Li, H., 2024, Medical Imaging 2024: Image Processing. Colliot, O. & Mitra, J. (eds.). SPIE, 1292633. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12926).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2023

    Cervical Cancer Tumor Delineation for Brachytherapy Using Diffusion Weighted Images

    Gach, H. M., Mackey, S. L., Kim, T., Zoberi, J. E., Garcia-Ramirez, J., Grigsby, P. W., Markovina, S. S. & Lin, A., 2023, Advances in Systems Engineering - Proceedings of the 30th International Conference on Systems Engineering, ICSEng 2023. Selvaraj, H., Chmaj, G. & Zydek, D. (eds.). Springer Science and Business Media Deutschland GmbH, p. 114-122 9 p. (Lecture Notes in Networks and Systems; vol. 761 LNNS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Deep-Supervised Adversarial Learning-based Classification For Digital Histologic Images

    Wang, Z., Fan, Z., Sun, L., Hao, Y., Gay, H. A., Thorstad, W. L., Wang, X. & Li, H., 2023, Medical Imaging 2023: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 124711V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12471).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2021

    Deep learning-based multi-class COVID-19 classification with x-ray images

    Fan, Z., He, S., Ruan, S., Wang, X. & Li, H., 2021, Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling. Linte, C. A. & Siewerdsen, J. H. (eds.). SPIE, 1159813. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11598).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Imaging of focused ultrasound-induced shear waves to probe mechanical anisotropy of tissue

    Guertler, C. A., Okamoto, R. J., Garbow, J. R., Chen, H. & Bayly, P. V., 2021, Proceedings of the 2021 Design of Medical Devices Conference, DMD 2021. American Society of Mechanical Engineers, V001T12A005. (Proceedings of the 2021 Design of Medical Devices Conference, DMD 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2017

    Notice of Removal: A reliable and convenient acoustic field characterization method of a clinical MR-HIFU system using electronic beam-steering

    Kothapalli, S. V. V. N., Partanen, A., Zhu, L., Gach, H. M., Altman, M. & Chen, H., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8091651. (IEEE International Ultrasonics Symposium, IUS; vol. 0).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2015

    A domain ontology for the Non-Coding RNA field

    Huang, J., Eilbeck, K., Blake, J. A., Dou, D., Natale, D. A., Ruttenberg, A., Smith, B., Zimmermann, M. T., Jiang, G., Lin, Y., Wu, B., He, Y., Zhang, S., Wang, X., Zhang, H., Liu, Z. & Tan, M., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 621-624 4 p. 7359755. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • A semantic approach for knowledge capture of MIcroRNA-Target gene interactions

    Huang, J., Gutierrez, F., Dou, D., Blake, J. A., Eilbeck, K., Natale, D. A., Smith, B., Lin, Y., Wang, X., Liu, Z., Tan, M. & Ruttenberg, A., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 975-982 8 p. 7359816. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Pupil dilation and motor response elicitation by ultrasound neuromodulation

    Kamimura, H., Wang, S., Chen, H., Wang, Q., Aurup, C., Acosta, C., Carneiro, A. & Konofagou, E., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329606. (2015 IEEE International Ultrasonics Symposium, IUS 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    10 Scopus citations
  • 2014

    Harmonic motion imaging in abdominal tumor detection and HIFU ablation monitoring: A feasibility study in a transgenic mouse model of pancreatic cancer

    Chen, H., Han, Y., Payen, T., Palermo, C., Oliver, K. & Konofagou, E., Oct 20 2014, IEEE International Ultrasonics Symposium, IUS. IEEE Computer Society, p. 923-926 4 p. 6931990. (IEEE International Ultrasonics Symposium, IUS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations
  • 2013

    An SVM-based approach for genotyping deletions and insertions with population sequence reads

    Chu, C., Zhang, J. & Wu, Y., 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013. 6629219. (2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A synchronization detection approach for identifying rare mutations underlying common disease

    Wang, J., Zhang, X., Liu, Y., Zhang, J. & Wu, Y., 2013, 5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013. p. 269-276 8 p. (5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2012

    Mechanisms for microvascular damage induced by ultrasound-activated microbubbles

    Chen, H., Brayman, A. A., Evan, A. P. & Matula, T. J., 2012, 11th International Symposium on Therapeutic Ultrasound. p. 41-46 6 p. (AIP Conference Proceedings; vol. 1481).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Workshop: Calling structural variation with low-coverage sequencing data by mapping to focal region

    Zhang, J. & Wu, Y., 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 6182679. (2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2011

    Haplotype inference from short sequence reads using a population genealogical history model

    Zhang, J. & Wu, Y., Dec 1 2011, Pacific Symposium on Biocomputing 2011, PSB 2011. p. 288-299 12 p. (Pacific Symposium on Biocomputing 2011, PSB 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Identifying interacting SNPs with parallel fish-agent based logic regression

    Wang, J., Zhang, J. & Wu, Y., Apr 14 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011. p. 171-177 7 p. 5729874. (2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Relaxation of microvessels deformed by ultrasound-activated microbubbles

    Chen, H., Brayman, A. A. & Matula, T. J., 2011, 2011 IEEE International Ultrasonics Symposium, IUS 2011. p. 1288-1291 4 p. 6293339. (IEEE International Ultrasonics Symposium, IUS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2010

    Imaging targeted microbubble interactions with microvessels

    Chen, H., Brayman, A. A. & Matula, T. J., 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 1117-1120 4 p. 5935840. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • OMIT: Domain ontology and knowledge acquisition in microRNA target prediction (short paper)

    Townsend, C., Huang, J., Dou, D., Dalvi, S., Hayes, P. J., He, L., Lin, W. C., Liu, H., Rudnick, R., Shah, H., Sun, H., Wang, X. & Tan, M., 2010, On the Move to Meaningful Internet Systems, OTM 2010 - Confederated International Conferences: CoopIS, IS, DOA and ODBASE, Proceedings. PART 2 ed. p. 1160-1167 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6427 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • The peculiar interactions of microbubbles and microvessels

    Chen, H., Brayman, A. A. & Matula, T. J., 2010, 20th International Congress on Acoustics 2010, ICA 2010 - Incorporating Proceedings of the 2010 Annual Conference of the Australian Acoustical Society. p. 647-651 5 p. (20th International Congress on Acoustics 2010, ICA 2010 - Incorporating Proceedings of the 2010 Annual Conference of the Australian Acoustical Society; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Vascular damage by ultrasound-activated microbubble induced vesselinvagination

    Chen, H., Brayman, A. A., Matula, T. J. & Evan, A. P., 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 678-681 4 p. 5935994. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 2009

    Observations of bubble-vessel interactions in ultrasound fields

    Chen, H., Kucewicz, J. C., Kreider, W., Brayman, A. A., Bailey, M. R. & Matula, T. J., 2009, 2009 IEEE International Ultrasonics Symposium and Short Courses, IUS 2009. Institute of Electrical and Electronics Engineers Inc., p. 23-26 4 p. 5441512. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Potential mechanism for vessel invagination caused by bubble oscillations

    Kreider, W., Chen, H., Bailey, M. R., Brayman, A. A. & Matula, T. J., 2009, 2009 IEEE International Ultrasonics Symposium and Short Courses, IUS 2009. Institute of Electrical and Electronics Engineers Inc., p. 353-356 4 p. 5441744. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2007

    The dynamics of cavitation bubble clouds in high-intensity focused ultrasound field observed by high-speed photography

    Li, X., Chen, H. & Wan, M., 2007, 27th International Congress on High-Speed Photography and Photonics. 627922. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6279 PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review