Division of Basic Science Research

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  • 2023

    Imaging of dendrites and sparse interneuronal networks with 3D random access microscopy

    Rózsa, B., Szadai, Z., Judák, L., Chiovini, B., Juhász, G., Ócsai, K., Pálfi, D., Mezriczky, Z., Szalay, G., Katona, G., Mihály, A., Szepesi, Á., Mucsi, Z., Roska, B., Pi, H. J., Chevy, Q., Albeanu, F. & Kepecs, A., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BW3B.6. (Optics and the Brain, BRAIN 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Predicting COVID-19 Severity Using a Cut-and-Solve Feature Selection Approach

    Smith, K., Chan, M., Brandenburg, J., Jones, K. A., Campagna, S. R., Garvin, M., Templeton, A. R., Jacobson, D., Cruchaga, C. & Climer, S., 2023, Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023. Jiang, X., Wang, H., Alhajj, R., Hu, X., Engel, F., Mahmud, M., Pisanti, N., Cui, X. & Song, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 3370-3375 6 p. (Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2018

    An active visible nanophotonics platform for sub-millisecond deep brain neural stimulation

    Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., 2018, CLEO: Applications and Technology, CLEO_AT 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F92-CLEO_AT 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

    Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Optical imaging of functional connectivity across development in the mouse cortex

    Rahn, R. M., Bice, A. R., Brier, L. M., Dougherty, J. D. & Culver, J. P., 2018, Optics and the Brain, BRAIN 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F88-BRAIN 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2016

    Integrated nanophotonic platform for high bandwidth and high resolution optogenetic excitation

    Tadayon, M. A., Li, Q., Mohanty, A., St-Gelais, R., Kepecs, A. & Lipson, M., Dec 16 2016, 2016 Conference on Lasers and Electro-Optics, CLEO 2016. Institute of Electrical and Electronics Engineers Inc., 7787412. (2016 Conference on Lasers and Electro-Optics, CLEO 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Integrated Nanophotonic Platform for High Bandwidth and High Resolution Optogenetic Excitation

    Tadayon, M. A., Li, Q., Mohanty, A., St-Gelais, R., Kepecs, A. & Lipson, M., 2016, CLEO: Applications and Technology, CLEO AT 2016. Optica Publishing Group (formerly OSA), ATu4O.4. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Scalable vision system for mouse homecage ethology

    Salem, G., Krynitsky, J., Kirkland, B., Lin, E., Chan, A., Anfinrud, S., Anderson, S., Garmendia-Cedillos, M., Belayachi, R., Alonso-Cruz, J., Yu, J., Iano-Fletcher, A., Dold, G., Talbot, T., Kravitz, A. V., Mitchell, J. B., Wu, G., Dennis, J. U., Hayes, M. & Branson, K. & 1 others, Pohida, T., 2016, Advanced Concepts for Intelligent Vision Systems - 17th International Conference, ACIVS 2016, Proceedings. Distante, C., Popescu, D., Scheunders, P., Philips, W. & Blanc-Talon, J. (eds.). Springer Verlag, p. 626-637 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10016 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 2014

    A comparison of combined P-value methods for gene differential expression using RNA-seq data

    Eteleeb, A. M., Moseley, H. N. & Rouchka, E. C., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, p. 417-425 9 p. (ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2013

    An island-based approach for differential expression analysis

    Eteleeb, A. M., Flight, R. M., Harrison, B. J., Petruska, J. C. & Rouchka, E. C., 2013, 2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013. p. 419-429 11 p. (2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Miniaturized LED sources for in vivo optogenetic experimentation

    Clements, I. P., Gnade, A. G., Rush, A. D., Patten, C. D., Twomey, M. C. & Kravitz, A. V., 2013, Optogenetics: Optical Methods for Cellular Control. 85860X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8586).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    13 Scopus citations
  • 2012

    Affymetrix® mismatch (MM) probes: Useful after all

    Flight, R. M., Eteleeb, A. M. & Rouchka, E. C., 2012, Proceedings of the 2012 ASE International Conference on BioMedical Computing, BioMedCom 2012. IEEE Computer Society, p. 6-13 8 p. 6516421. (Proceedings of the 2012 ASE International Conference on BioMedical Computing, BioMedCom 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Cell type specific analysis of human transcriptome data

    Xu, X., Nehorai, A. & Dougherty, J., Dec 1 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 99-100 2 p. 6507737. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2002

    3 State neurons for contextual processing

    Kepecs, A. & Ragliavacliari, S., 2002, Advances in Neural Information Processing Systems 14 - Proceedings of the 2001 Conference, NIPS 2001. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Why neuronal dynamics should control synaptic learning rules

    Tegnér, J. & Kepecs, Á., 2002, Advances in Neural Information Processing Systems 14 - Proceedings of the 2001 Conference, NIPS 2001. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations