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  • 2013

    An SVM-based approach for genotyping deletions and insertions with population sequence reads

    Chu, C., Zhang, J. & Wu, Y., 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013. 6629219. (2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • A synchronization detection approach for identifying rare mutations underlying common disease

    Wang, J., Zhang, X., Liu, Y., Zhang, J. & Wu, Y., 2013, 5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013. p. 269-276 8 p. (5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Comparison between microsphere-assisted and confocal microscopies

    Darafsheh, A., Limberopoulos, N. I., Derov, J. S., Walker, D. E. & Astratov, V. N., 2013, 2013 15th International Conference on Transparent Optical Networks, ICTON 2013. 6602909. (International Conference on Transparent Optical Networks).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • Contact focusing multimodal probes for potential use in ophthalmic surgery with the Erbium:YAG laser

    Darafsheh, A., Hutchens, T. C., Fardad, A., Antoszyk, A. N., Ying, H. S., Fried, N. M. & Astratov, V. N., 2013, Ophthalmic Technologies XXIII. 856729. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8567).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Development of respiratory training system using individual characteristic guiding waveform

    Kang, S. H., Yoon, J. W., Kim, T. H. & Suh, T. S., 2013, World Congress on Medical Physics and Biomedical Engineering. p. 2123-2125 3 p. (IFMBE Proceedings; vol. 39 IFMBE).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Filtering of radially polarized beams by microsphere-chain waveguides

    Darafsheh, A., Limberopoulos, N. I., Lupu, A. & Astratov, V. N., 2013, Integrated Optics: Devices, Materials, and Technologies XVII. 86270D. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8627).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    7 Scopus citations
  • Improving microseismic imaging: Role of acquisition, velocity model, and imaging condition

    Behura, J., Forghani, F. & Bazargani, F., 2013, Society of Exploration Geophysicists International Exposition and 83rd Annual Meeting, SEG 2013: Expanding Geophysical Frontiers. Society of Exploration Geophysicists, p. 2119-2123 5 p. (Society of Exploration Geophysicists International Exposition and 83rd Annual Meeting, SEG 2013: Expanding Geophysical Frontiers).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • MVCT image quality and dose as change of jaw aperture size on a helical TomoTherapy

    Jung, J. H., Cho, K. H., Moon, S. K., Kim, Y. H., Min, C. K., Kim, W. C., Kim, E. S., Chang, A. R., Kim, T. H., Yoon, J. W. & Suh, T. S., 2013, World Congress on Medical Physics and Biomedical Engineering. p. 1776-1778 3 p. (IFMBE Proceedings; vol. 39 IFMBE).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Optical microscopy with super-resolution by liquid-immersed high-index microspheres

    Darafsheh, A., Limberopoulos, N. I., Derov, J. S., Walker, D. E., Durska, M., Krizhanovskii, D. N., Whittaker, D. M. & Astratov, V. N., 2013, Nanoscale Imaging, Sensing, and Actuation for Biomedical Applications X. SPIE, 85940C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8594).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    18 Scopus citations
  • Signal enhancement in microseismic data: Application to a field dataset

    Forghani-Arani, F., Willis, M., Haines, S. S., Behura, J. & Batzle, M., 2013, Society of Exploration Geophysicists International Exposition and 83rd Annual Meeting, SEG 2013: Expanding Geophysical Frontiers. Society of Exploration Geophysicists, p. 4289-4293 5 p. (Society of Exploration Geophysicists International Exposition and 83rd Annual Meeting, SEG 2013: Expanding Geophysical Frontiers).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Super-resolution microscopy by dielectric microcylinders

    Darafsheh, A., Li, Y. & Astratov, V. N., 2013, 2013 15th International Conference on Transparent Optical Networks, ICTON 2013. 6602907. (International Conference on Transparent Optical Networks).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    14 Scopus citations
  • 2012

    A fully four-dimensional iterative motion estimation and compensation method for cardiac CT

    Tang, Q., Cammin, J., Srivastava, S. & Taguchi, K., 2012, Medical Imaging 2012: Physics of Medical Imaging. 83131U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8313).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    2 Scopus citations
  • A practical approach to prediction of internal multiples and ghosts

    Behura, J. & Forghani, F., 2012, Society of Exploration Geophysicists International Exposition and 82nd Annual Meeting 2012, SEG 2012. Society of Exploration Geophysicists, p. 3642-3646 5 p. (Society of Exploration Geophysicists International Exposition and 82nd Annual Meeting 2012, SEG 2012).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    6 Scopus citations
  • Beam tapering effect in microsphere chains: From geometrical to physical optics

    Allen, K. W., Darafsheh, A. & Astratov, V. N., 2012, Laser Resonators, Microresonators, and Beam Control XIV. 823622. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8236).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • Mechanisms for microvascular damage induced by ultrasound-activated microbubbles

    Chen, H., Brayman, A. A., Evan, A. P. & Matula, T. J., 2012, 11th International Symposium on Therapeutic Ultrasound. p. 41-46 6 p. (AIP Conference Proceedings; vol. 1481).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Multi-contrast photoacoustic microscopy

    Hu, S., Sohn, R., Lu, Z. H., Soetikno, B., Zhong, Q., Yao, J., Maslov, K., Arbeit, J. M. & Wang, L. V., Mar 15 2012, Photons Plus Ultrasound: Imaging and Sensing 2012. SPIE, 822310. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8223).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • Noise suppression in surface microseismic data by τ − p transform

    Forghani-Arani, F., Willis, M., Haines, S., Batzle, M., Behura, J. & Davidson, M., 2012, Society of Exploration Geophysicists International Exposition and 82nd Annual Meeting 2012, SEG 2012. Society of Exploration Geophysicists, p. 3826-3830 5 p. (Society of Exploration Geophysicists International Exposition and 82nd Annual Meeting 2012, SEG 2012).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Novel microsphere chain fiber tips for use in mid-infrared ophthalmic laser surgery

    Hutchens, T. C., Darafsheh, A., Fardad, A., Antoszyk, A. N., Ying, H. S., Astratov, V. N. & Fried, N. M., 2012, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XII. 821803. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8218).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    9 Scopus citations
  • Onboard cone beam CT with flexible image trajectories to improve image quality and longitudinal coverage - Simulation and phantom study

    Yang, D., Tan, J., Li, H., Goddu, S. M. & Li, H., 2012, Medical Imaging 2012: Physics of Medical Imaging. 83132Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8313).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Photonic nanojet-induced modes: Fundamentals and applications

    Darafsheh, A., Lupu, A., Burand, S. A., Hutchens, T. C., Fried, N. M. & Astratov, V. N., 2012, Integrated Optics: Devices, Materials, and Technologies XVI. 82640X. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8264).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    11 Scopus citations
  • Radial polarization of periodically focused modes in chains of dielectric spheres

    Darafsheh, A. & Astratov, V. N., 2012, ICTON 2012 - 14th International Conference on Transparent Optical Networks. 6253820. (International Conference on Transparent Optical Networks).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • Super-resolution imaging by high-index microspheres immersed in a liquid

    Darafsheh, A., Fiddy, M. A. & Astratov, V. N., 2012, ICTON 2012 - 14th International Conference on Transparent Optical Networks. 6254502. (International Conference on Transparent Optical Networks).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    14 Scopus citations
  • SUPIR: Surface uncertainty-penalized, non-rigid image registration for pelvic CT imaging

    Zhang, C., Christensen, G. E., Kurtek, S., Srivastava, A., Murphy, M. J., Weiss, E., Bai, E. & Williamson, J. F., 2012, Biomedical Image Registration - 5th International Workshop, WBIR 2012, Proceedings. p. 236-245 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7359 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    4 Scopus citations
  • Theoretical studies of structure and doping of hydrogenated amorphous silicon

    Cai, B. & Drabold, D. A., 2012, Amorphous and Polycrystalline Thin-Film Silicon Science and Technology - 2011. p. 297-305 9 p. (Materials Research Society Symposium Proceedings; vol. 1321).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    4 Scopus citations
  • Towards spatial frequency domain optical imaging of neurovascular coupling in a mouse model of Alzheimer's disease

    Lin, A. J., Konecky, S. D., Rice, T. B., Green, K. N., Choi, B., Durkin, A. J. & Tromberg, B. J., 2012, Photonic Therapeutics and Diagnostics VIII. 82074U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8207).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    1 Scopus citations
  • Workshop: Calling structural variation with low-coverage sequencing data by mapping to focal region

    Zhang, J. & Wu, Y., 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 6182679. (2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 2011

    Ab-initio calculation of structural and electrical properties of amorphous TiO 2

    Prasai, B., Cai, B., Drabold, D. A., Underwood, M. K. & Lewis, A. P., Dec 1 2011, Materials Science and Technology Conference and Exhibition 2011, MS and T'11. p. 12-20 9 p. (Materials Science and Technology Conference and Exhibition 2011, MS and T'11; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Analysis of passive surface-wave noise in surface microseismic data and its implications

    Forghani-Arani, F., Willis, M., Haines, S., Batzle, M. & Davidson, M., 2011, Society of Exploration Geophysicists International Exposition and 81st Annual Meeting 2011, SEG 2011. Society of Exploration Geophysicists, p. 1493-1498 6 p. (Society of Exploration Geophysicists International Exposition and 81st Annual Meeting 2011, SEG 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • A tabletop clinical x-ray CT scanner with energy-resolving photon counting detectors

    Cammin, J., Srivastava, S., Barber, W. C., Iwanczyk, J. S., Hartsough, N. E., Nygard, E., Wessel, J. C., Malakhov, N. & Taguchi, K., 2011, Medical Imaging 2011: Physics of Medical Imaging. 79611S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7961).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • Chains of variable size spheres for focusing of multimodal beams in photonics applications

    Darafsheh, A. & Astratov, V. N., 2011, 2011 13th International Conference on Transparent Optical Networks, ICTON 2011. 5971157. (International Conference on Transparent Optical Networks).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • Characterization of high index microsphere resonators in fiber-integrated microfluidic platforms

    Svitelskiy, O., Sun, D., Darafsheh, A., Sumetsky, M., Lupu, A., Tchernycheva, M. & Astratov, V. N., 2011, Laser Resonators and Beam Control XIII. 791314. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7913).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    4 Scopus citations
  • Coordinated user scheduling with transmit beamforming in the presence of inter-femtocell interference

    Lee, H. C., Oh, D. C. & Lee, Y. H., 2011, 2011 IEEE International Conference on Communications, ICC 2011. 5963055. (IEEE International Conference on Communications).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    15 Scopus citations
  • Effect of contrast magnitude and resolution metric on noise-resolution tradeoffs in x-ray CT imaging: A comparison of non-quadratic penalized alternating minimization and filtered backprojection algorithms

    Evans, J. D., Politte, D. G., Whiting, B. R., O'Sullivan, J. A. & Williamson, J. F., 2011, Medical Imaging 2011: Physics of Medical Imaging. 79612C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7961).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    6 Scopus citations
  • Focusing capability of integrated chains of microspheres in the limit of geometrical optics

    Darafsheh, A., Allen, K. W., Fardad, A., Fried, N. M., Antoszyk, A. N., Ying, H. S. & Astratov, V. N., 2011, Laser Resonators and Beam Control XIII. 79131A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7913).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Haplotype inference from short sequence reads using a population genealogical history model

    Zhang, J. & Wu, Y., Dec 1 2011, Pacific Symposium on Biocomputing 2011, PSB 2011. p. 288-299 12 p. (Pacific Symposium on Biocomputing 2011, PSB 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Identifying interacting SNPs with parallel fish-agent based logic regression

    Wang, J., Zhang, J. & Wu, Y., Apr 14 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011. p. 171-177 7 p. 5729874. (2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • Photonic nanojet-induced modes: From physics to applications

    Allen, K. W., Darafsheh, A. & Astratov, V. N., 2011, 2011 13th International Conference on Transparent Optical Networks, ICTON 2011. 5970965. (International Conference on Transparent Optical Networks).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    10 Scopus citations
  • Relaxation of microvessels deformed by ultrasound-activated microbubbles

    Chen, H., Brayman, A. A. & Matula, T. J., 2011, 2011 IEEE International Ultrasonics Symposium, IUS 2011. p. 1288-1291 4 p. 6293339. (IEEE International Ultrasonics Symposium, IUS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Ultra-precise focusing multimodal microprobes for contact laser tissue surgery

    Darafsheh, A., Fardad, A., Fried, N. M., Antoszyk, A. N., Ying, H. S. & Astratov, V. N., 2011, 2011 Conference on Lasers and Electro-Optics: Laser Science to Photonic Applications, CLEO 2011. 5950031. (2011 Conference on Lasers and Electro-Optics: Laser Science to Photonic Applications, CLEO 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Ultra-precise focusing multimodal microprobes for contact laser tissue surgery

    Darafsheh, A., Fardad, A., Fried, N. M., Antoszyk, A. N., Ying, H. S. & Astratov, V. N., 2011, CLEO: Applications and Technology, CLEO_AT 2011. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2010

    Cognitive radio based femtocell resource allocation

    Oh, D. C., Lee, H. C. & Lee, Y. H., 2010, 2010 International Conference on Information and Communication Technology Convergence, ICTC 2010. p. 274-279 6 p. 5674680. (2010 International Conference on Information and Communication Technology Convergence, ICTC 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    38 Scopus citations
  • Delivery of VMAT modulated arc therapy to moving tumours

    Oddiraju, S., Sun, B., Papiez, L., Daescu, O., Li, H. & Rangaraj, D., Dec 1 2010, UKACC International Conference on CONTROL 2010. 4 ed. p. 775-780 6 p. 0379. (IET Seminar Digest; vol. 2010, no. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Evaluation of dual-front active contour segmentation and metal shadow filling methods on metal artifact reduction in multi-slice helical CT

    Li, H., Yu, L., Guimaraes, L. S., Fletcher, J. G. & McCollough, C. H., 2010, Medical Imaging 2010: Physics of Medical Imaging. PART 2 ed. 76222N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7622, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Feasibility of identifying microseismic events at the geothermal system of Mt. Princeton using surface passive seismic data

    Forghani-Arani, F., Batzle, M. & Behura, J., 2010, Society of Exploration Geophysicists International Exposition and 80th Annual Meeting 2010, SEG 2010. Society of Exploration Geophysicists, p. 2201-2206 6 p. (Society of Exploration Geophysicists International Exposition and 80th Annual Meeting 2010, SEG 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Focusing microprobes based on integrated chains of microspheres

    Astratov, V. N., Darafsheh, A., Kerr, M. D., Allen, K. W. & Fried, N. M., 2010, PIERS 2010 Cambridge - Progress in Electromagnetics Research Symposium, Proceedings. p. 419-423 5 p. (PIERS 2010 Cambridge - Progress in Electromagnetics Research Symposium, Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    7 Scopus citations
  • Imaging targeted microbubble interactions with microvessels

    Chen, H., Brayman, A. A. & Matula, T. J., 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 1117-1120 4 p. 5935840. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Integrated microsphere arrays: Light focusing and propagation effects

    Darafsheh, A., Kerr, M. D., Allen, K. W., Fried, N. M., Antoszyk, A. N., Ying, H. S. & Astratov, V. N., 2010, Optoelectronic Integrated Circuits XII. 76050R. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7605).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    10 Scopus citations
  • Integrated microsphere arrays as a compact focusing tool for biomedical and photonics applications

    Darafsheh, A., Kerr, M. D., Allen, K. W. & Astratov, V. N., 2010, Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010. Association for Computing Machinery, 5499857. (Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Integrated microsphere arrays as a compact focusing tool for biomedical and photonics applications

    Darafsheh, A., Kerr, M. D., Allen, K. W. & Astratov, V. N., 2010, Conference on Lasers and Electro-Optics, CLEO 2010. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Light focusing microprobes for biomedical and photonics applications based on integrated microsphere arrays

    Darafsheh, A., Svitelskiy, O. V. & Astratov, V. N., 2010, 2010 12th International Conference on Transparent Optical Networks, ICTON 2010. 5548947. (2010 12th International Conference on Transparent Optical Networks, ICTON 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations