Department of Neuroscience

2019

YAP1 subgroup supratentorial ependymoma requires TEAD and nuclear factor I-mediated transcriptional programmes for tumorigenesis

Pajtler, K. W., Wei, Y., Okonechnikov, K., Silva, P. B. G., Vouri, M., Zhang, L., Brabetz, S., Sieber, L., Gulley, M., Mauermann, M., Wedig, T., Mack, N., Imamura Kawasawa, Y., Sharma, T., Zuckermann, M., Andreiuolo, F., Holland, E., Maass, K., Körkel-Qu, H., Liu, H. K., & 13 othersSahm, F., Capper, D., Bunt, J., Richards, L. J., Jones, D. T. W., Korshunov, A., Chavez, L., Lichter, P., Hoshino, M., Pfister, S. M., Kool, M., Li, W. & Kawauchi, D., Dec 1 2019, In: Nature communications. 10, 1, 3914.

Research output: Contribution to journal › Article › peer-review

Open Access

53 Scopus citations

2018

Acute control of the sleep switch in drosophila reveals a role for gap junctions in regulating behavioral responsiveness

Troup, M., Yap, M. H. W., Rohrscheib, C., Grabowska, M. J., Ertekin, D., Randeniya, R., Kottler, B., Larkin, O., Munro, K., Shaw, P. J. & van Swinderen, B., Aug 15 2018, In: eLife. 7, e37105.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

A gyral coordinate system predictive of fibre orientations

Cottaar, M., Bastiani, M., Chen, C., Dikranian, K., Van Essen, D., Behrens, T. E., Sotiropoulos, S. N. & Jbabdi, S., Aug 1 2018, In: NeuroImage. 176, p. 417-430 14 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

An active visible nanophotonics platform for sub-millisecond deep brain neural stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., 2018, CLEO: Applications and Technology, CLEO_AT 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F92-CLEO_AT 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

A pan-mammalian map of interhemispheric brain connections predates the evolution of the corpus callosum

Suárez, R., Paolino, A., Fenlon, L. R., Morcom, L. R., Kozulin, P., Kurniawan, N. D. & Richards, L. J., Sep 18 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 38, p. 9622-9627 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

33 Scopus citations

Astroglial CB₁ Receptors Determine Synaptic D-Serine Availability to Enable Recognition Memory

Robin, L. M., Oliveira da Cruz, J. F., Langlais, V. C., Martin-Fernandez, M., Metna-Laurent, M., Busquets-Garcia, A., Bellocchio, L., Soria-Gomez, E., Papouin, T., Varilh, M., Sherwood, M. W., Belluomo, I., Balcells, G., Matias, I., Bosier, B., Drago, F., Van Eeckhaut, A., Smolders, I., Georges, F., Araque, A., & 3 othersPanatier, A., Oliet, S. H. R. & Marsicano, G., Jun 6 2018, In: Neuron. 98, 5, p. 935-944.e5

Research output: Contribution to journal › Article › peer-review

Open Access

131 Scopus citations

A Viral Receptor Complementation Strategy to Overcome CAV-2 Tropism for Efficient Retrograde Targeting of Neurons

Li, S. J., Vaughan, A., Sturgill, J. F. & Kepecs, A., Jun 6 2018, In: Neuron. 98, 5, p. 905-917.e5

Research output: Contribution to journal › Article › peer-review

Open Access

42 Scopus citations

Cargo crowding at actin-rich regions along axons causes local traffic jams

Sood, P., Murthy, K., Kumar, V., Nonet, M. L., Menon, G. I. & Koushika, S. P., Mar 2018, In: Traffic. 19, 3, p. 166-181 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Compound C inhibits nonsense-mediated RNA decay independently of AMPK

Cheruiyot, A., Li, S., Nickless, A., Roth, R., Fitzpatrick, J. A. J. & You, Z., Oct 2018, In: PloS one. 13, 10, e0204978.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Craniomandibular form and body size variation of first generation mouse hybrids: A model for hominin hybridization

Warren, K. A., Ritzman, T. B., Humphreys, R. A., Percival, C. J., Hallgrímsson, B. & Ackermann, R. R., Mar 2018, In: Journal of Human Evolution. 116, p. 57-74 18 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

DCC Is Required for the Development of Nociceptive Topognosis in Mice and Humans

da Silva, R. V., Johannssen, H. C., Wyss, M. T., Roome, R. B., Bourojeni, F. B., Stifani, N., Marsh, A. P. L., Ryan, M. M., Lockhart, P. J., Leventer, R. J., Richards, L. J., Rosenblatt, B., Srour, M., Weber, B., Zeilhofer, H. U. & Kania, A., Jan 30 2018, In: Cell Reports. 22, 5, p. 1105-1114 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

DCC mutation update: Congenital mirror movements, isolated agenesis of the corpus callosum, and developmental split brain syndrome

IRC5 Consortium, Jan 2018, In: Human mutation. 39, 1, p. 23-39 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

27 Scopus citations

Deletion of tsc2 in nociceptors reduces target innervation, ion channel expression, and sensitivity to heat

Carlin, D., Golden, J. P., Mogha, A., Samineni, V. K., Monk, K. R., Gereau, R. W. & Cavalli, V., Mar 1 2018, In: eNeuro. 5, 2, e0436-17.2018.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

Dental topographic analysis of paromomyid (Plesiadapiformes, Primates) cheek teeth: more than 15 million years of changing surfaces and shifting ecologies^*

López-Torres, S., Selig, K. R., Prufrock, K. A., Lin, D. & Silcox, M. T., Feb 17 2018, In: Historical Biology. 30, 1-2, p. 76-88 13 p.

Research output: Contribution to journal › Article › peer-review

32 Scopus citations

Development and evolution of cerebral and cerebellar cortex

Van Essen, D. C., Donahue, C. J. & Glasser, M. F., Aug 1 2018, In: Brain, Behavior and Evolution. 91, 3, p. 158-169 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

59 Scopus citations

Development of vestibular behaviors in zebrafish

Bagnall, M. W. & Schoppik, D., Dec 2018, In: Current Opinion in Neurobiology. 53, p. 83-89 7 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

26 Scopus citations

Dissociation of LFP power and tuning in the frontal cortex during memory

Holmes, C. D., Papadimitriou, C. & Snyder, L. H., Sep 19 2018, In: Journal of Neuroscience. 38, 38, p. 8177-8186 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Dynamic patterns of cortical expansion during folding of the preterm human brain

Garcia, K. E., Robinson, E. C., Alexopoulos, D., Dierker, D. L., Glasser, M. F., Coalson, T. S., Ortinau, C. M., Rueckert, D., Taber, L. A., Van Essen, D. C., Rogers, C. E., Smysere, C. D. & Bayly, P. V., Mar 20 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 12, p. 3156-3161 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

66 Scopus citations

Epigenetic regulator UHRF1 inactivates REST and growth suppressor gene expression via DNA methylation to promote axon regeneration

Oh, Y. M., Mahar, M., Ewan, E. E., Leahy, K. M., Zhao, G. & Cavalli, V., Dec 26 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 52, p. E12417-E12426

Research output: Contribution to journal › Article › peer-review

Open Access

43 Scopus citations

Erratum: Correction: A Mixture of Delta-Rules Approximation to Bayesian Inference in Change-Point Problems (PLoS computational biology (2013) 9 7 (e1003150))

Wilson, R. C., Nassar, M. R., Tavoni, G. & Gold, J. I., Jun 1 2018, In: PLoS computational biology. 14, 6, p. e1006210

Research output: Contribution to journal › Comment/debate

Open Access

4 Scopus citations

Erratum: Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children (Proceedings of the National Academy of Sciences of the United States of America (2017) 114 (E6166–E6175) DOI: 10.1073/pnas.1706359114)

Zhao, G., Vatanen, T., Droit, L., Park, A., Kostic, A. D., Poon, T. W., Vlamakis, H., Siljander, H., Härkönen, T., Hämäläinen, A. M., Peet, A., Tillmann, V., Ilonen, J., Wang, D., Knip, M., Xavier, R. J. & Virgin, H. W., Nov 27 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 48, p. E11426

Research output: Contribution to journal › Comment/debate

Open Access

2 Scopus citations

Erratum: Correction: Transcriptional regulation of intermediate progenitor cell generation during hippocampal development (doi: 10.1242/dev.140681) (Development (Cambridge, England) (2016) 143 24 (4620-4630) PII: dev169631)

Harris, L., Zalucki, O., Gobius, I., McDonald, H., Osinki, J., Harvey, T. J., Essebier, A., Vidovic, D., Gladwyn-Ng, I., Burne, T. H., Heng, J. I., Richards, L. J., Gronostajski, R. M. & Piper, M., Jul 24 2018, In: Development (Cambridge, England). 145, 14

Research output: Contribution to journal › Comment/debate

Open Access

Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects

Harms, M. P., Somerville, L. H., Ances, B. M., Andersson, J., Barch, D. M., Bastiani, M., Bookheimer, S. Y., Brown, T. B., Buckner, R. L., Burgess, G. C., Coalson, T. S., Chappell, M. A., Dapretto, M., Douaud, G., Fischl, B., Glasser, M. F., Greve, D. N., Hodge, C., Jamison, K. W., Jbabdi, S., & 21 othersKandala, S., Li, X., Mair, R. W., Mangia, S., Marcus, D., Mascali, D., Moeller, S., Nichols, T. E., Robinson, E. C., Salat, D. H., Smith, S. M., Sotiropoulos, S. N., Terpstra, M., Thomas, K. M., Tisdall, M. D., Ugurbil, K., van der Kouwe, A., Woods, R. P., Zöllei, L., Van Essen, D. C. & Yacoub, E., Dec 2018, In: NeuroImage. 183, p. 972-984 13 p.

Research output: Contribution to journal › Article › peer-review

135 Scopus citations

Fast, in vivo voltage imaging using a red fluorescent indicator

Kannan, M., Vasan, G., Huang, C., Haziza, S., Li, J. Z., Inan, H., Schnitzer, M. J. & Pieribone, V. A., Dec 1 2018, In: Nature Methods. 15, 12, p. 1108-1116 9 p.

Research output: Contribution to journal › Article › peer-review

From fossils to function: Integrative and taxonomically inclusive approaches to vertebrate evolutionary neuroscience

Morhardt, A. C., Aug 1 2018, In: Brain, Behavior and Evolution. 91, 3, p. 123-124 2 p.

Research output: Contribution to journal › Editorial

Open Access

GPCR signalling from within the cell

Jong, Y. J. I., Harmon, S. K. & O'Malley, K. L., Nov 2018, In: British Journal of Pharmacology. 175, 21, p. 4026-4035 10 p.

Research output: Contribution to journal › Review article › peer-review

65 Scopus citations

Intracellular GPCRs Play Key Roles in Synaptic Plasticity

Jong, Y. J. I., Harmon, S. K. & O'Malley, K. L., Sep 19 2018, In: ACS Chemical Neuroscience. 9, 9, p. 2162-2172 11 p.

Research output: Contribution to journal › Review article › peer-review

35 Scopus citations

Intrinsic mechanisms of neuronal axon regeneration

Mahar, M. & Cavalli, V., Jun 1 2018, In: Nature Reviews Neuroscience. 19, 6, p. 323-337 15 p.

Research output: Contribution to journal › Review article › peer-review

260 Scopus citations

John Lisman 1944–2017

Kepecs, A., Feb 1 2018, In: Nature neuroscience. p. 1-2 2 p.

Research output: Contribution to journal › Article › peer-review

Open Access

LONGO: An R package for interactive gene length dependent analysis for neuronal identity

McCoy, M. J., Paul, A. J., Victor, M. B., Richner, M., Gabel, H. W., Gong, H., Yoo, A. S. & Ahn, T. H., Jul 1 2018, In: Bioinformatics. 34, 13, p. i422-i428

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Long-term optical brain imaging in live adult fruit flies /631/1647/245/2186 /631/1647/328/2236 /631/378/2624 /14/69 /14/35 /14/56 /64/24 article

Huang, C., Maxey, J. R., Sinha, S., Savall, J., Gong, Y. & Schnitzer, M. J., Dec 1 2018, In: Nature communications. 9, 1, 872.

Research output: Contribution to journal › Article › peer-review

Open Access

LysMD3 is a type II membrane protein without an in vivo role in the response to a range of pathogens

Yokoyama, C. C., Baldridge, M. T., Leung, D. W., Zhao, G., Desai, C., Liu, T. C., Diaz-Ochoa, V. E., Huynh, J. P., Kimmey, J. M., Sennott, E. L., Hole, C. R., Idol, R. A., Park, S., Storek, K. M., Wang, C., Hwang, S., Milam, A. V., Chen, E., Kerrinnes, T., Starnbach, M. N., & 12 othersHandley, S. A., Mysorekar, I. U., Allen, P. M., Monack, D. M., Dinauer, M. C., Doering, T. L., Tsolis, R. M., Dworkin, J. E., Stallings, C. L., Amarasinghe, G. K., Micchelli, C. A. & Virgina, H. W., Apr 20 2018, In: Journal of Biological Chemistry. 293, 16, p. 6022-6038 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Mandibular ramus shape variation and ontogeny in Homo sapiens and Homo neanderthalensis

Terhune, C. E., Ritzman, T. B. & Robinson, C. A., Aug 2018, In: Journal of Human Evolution. 121, p. 55-71 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Microglia and macrophages in brain homeostasis and disease

Li, Q. & Barres, B. A., Apr 1 2018, In: Nature Reviews Immunology. 18, 4, p. 225-242 18 p.

Research output: Contribution to journal › Review article › peer-review

892 Scopus citations

Mining the Virome for Insights into Type 1 Diabetes

Park, A. & Zhao, G., May 1 2018, In: DNA and cell biology. 37, 5, p. 422-425 4 p.

Research output: Contribution to journal › Review article › peer-review

8 Scopus citations

Modern Laser Scanning Confocal Microscopy

Bayguinov, P. O., Oakley, D. M., Shih, C. C., Geanon, D. J., Joens, M. S. & Fitzpatrick, J. A. J., Jul 2018, In: Current Protocols in Cytometry. 85, 1, e39.

Research output: Contribution to journal › Comment/debate

47 Scopus citations

Multimodal surface matching with higher-order smoothness constraints

Robinson, E. C., Garcia, K., Glasser, M. F., Chen, Z., Coalson, T. S., Makropoulos, A., Bozek, J., Wright, R., Schuh, A., Webster, M., Hutter, J., Price, A., Cordero Grande, L., Hughes, E., Tusor, N., Bayly, P. V., Van Essen, D. C., Smith, S. M., Edwards, A. D., Hajnal, J., & 3 othersJenkinson, M., Glocker, B. & Rueckert, D., Feb 15 2018, In: NeuroImage. 167, p. 453-465 13 p.

Research output: Contribution to journal › Article › peer-review

117 Scopus citations

Multiple events of gene manipulation via in pouch electroporation in a marsupial model of mammalian forebrain development

Paolino, A., Fenlon, L. R., Kozulin, P., Richards, L. J. & Suárez, R., Jan 1 2018, In: Journal of Neuroscience Methods. 293, p. 45-52 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Muscle Functional Morphology in Paleobiology: The Past, Present, and Future of “Paleomyology”

Perry, J. M. G. & Prufrock, K. A., Mar 2018, In: Anatomical Record. 301, 3, p. 538-555 18 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Neurite imaging reveals microstructural variations in human cerebral cortical gray matter

Fukutomi, H., Glasser, M. F., Zhang, H., Autio, J. A., Coalson, T. S., Okada, T., Togashi, K., Van Essen, D. C. & Hayashi, T., Nov 15 2018, In: NeuroImage. 182, p. 488-499 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

95 Scopus citations

New fossils from Tadkeshwar Mine (Gujarat, India) increase primate diversity from the early Eocene Cambay Shale

Rose, K. D., Dunn, R. H., Kumar, K., Perry, J. M. G., Prufrock, K. A., Rana, R. S. & Smith, T., Sep 2018, In: Journal of Human Evolution. 122, p. 93-107 15 p.

Research output: Contribution to journal › Article › peer-review

8 Scopus citations

NFIB Haploinsufficiency Is Associated with Intellectual Disability and Macrocephaly

Schanze, I., Bunt, J., Lim, J. W. C., Schanze, D., Dean, R. J., Alders, M., Blanchet, P., Attié-Bitach, T., Berland, S., Boogert, S., Boppudi, S., Bridges, C. J., Cho, M. T., Dobyns, W. B., Donnai, D., Douglas, J., Earl, D. L., Edwards, T. J., Faivre, L., Fregeau, B., & 29 othersGenevieve, D., Gérard, M., Gatinois, V., Holder-Espinasse, M., Huth, S. F., Izumi, K., Kerr, B., Lacaze, E., Lakeman, P., Mahida, S., Mirzaa, G. M., Morgan, S. M., Nowak, C., Peeters, H., Petit, F., Pilz, D. T., Puechberty, J., Reinstein, E., Rivière, J. B., Santani, A. B., Schneider, A., Sherr, E. H., Smith-Hicks, C., Wieland, I., Zackai, E., Zhao, X., Gronostajski, R. M., Zenker, M. & Richards, L. J., Nov 1 2018, In: American journal of human genetics. 103, 5, p. 752-768 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

23 Scopus citations

Non-cell Autonomous Degeneration: Role of Astrocytes in Neurodegenerative Diseases. Role of Astrocytes in Neurodegenerative Diseases.

Smith, S. E. & Bonni, A., Apr 4 2018, The Molecular and Cellular Basis of Neurodegenerative Diseases: Underlying Mechanisms. Elsevier Inc., p. 415-440 26 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

1 Scopus citations

Nonlinear optical imaging of extracellular matrix proteins

Shih, C. C., Oakley, D. M., Joens, M. S., Roth, R. A. & Fitzpatrick, J. A. J., 2018, Methods in Cell Biology. Academic Press Inc., p. 57-78 22 p. (Methods in Cell Biology; vol. 143).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

5 Scopus citations

Palladin is a neuron-specific translational target of mtor signaling that regulates axon morphogenesis

Umegaki, Y., Brotons, A. M., Nakanishi, Y., Luo, Z., Zhang, H., Bonni, A. & Ikeuchi, Y., May 23 2018, In: Journal of Neuroscience. 38, 21, p. 4985-4995 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans

Van Essen, D. C. & Glasser, M. F., Aug 22 2018, In: Neuron. 99, 4, p. 640-663 24 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

64 Scopus citations

Pharmacogenetic stimulation of neuronal activity increases myelination in an axon-specific manner

Mitew, S., Gobius, I., Fenlon, L. R., McDougall, S. J., Hawkes, D., Xing, Y. L., Bujalka, H., Gundlach, A. L., Richards, L. J., Kilpatrick, T. J., Merson, T. D. & Emery, B., Dec 1 2018, In: Nature communications. 9, 1, 306.

Research output: Contribution to journal › Article › peer-review

Open Access

180 Scopus citations

Place learning overrides innate behaviors in Drosophila

Baggett, V., Mishra, A., Kehrer, A. L., Robinson, A. O., Shaw, P. & Zars, T., Mar 2018, In: Learning and Memory. 25, 3, p. 122-128 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

Principal cells of the brainstem’s interaural sound level detector are temporal differentiators rather than integrators

Franken, T. P., Joris, P. X. & Smith, P. H., Jun 14 2018, In: eLife. 7, e33854.

Research output: Contribution to journal › Article › peer-review

Open Access

30 Scopus citations

Department of Neuroscience

Research output

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