Department of Neuroscience

2021

Osteolineage depletion of mitofusin2 enhances cortical bone formation in female mice

Zarei, A., Ballard, A., Cox, L., Bayguinov, P., Harris, T., Davis, J. L., Roper, P., Fitzpatrick, J., Faccio, R. & Veis, D. J., Jul 2021, In: Bone. 148, 115941.

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Pancreatic β-cell–specific deletion of VPS41 causes diabetes due to defects in insulin secretion

Burns, C. H., Yau, B., Rodriguez, A., Triplett, J., Maslar, D., An, Y. S., van der Welle, R. E. N., Kossina, R. G., Fisher, M. R., Strout, G. W., Bayguinov, P. O., Veenendaal, T., Chitayat, D., Fitzpatrick, J. A. J., Klumperman, J., Kebede, M. A. & Asensio, C. S., Feb 1 2021, In: Diabetes. 70, 2, p. 436-448 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Primate Spatial Memory Cells Become Tuned Early and Lose Tuning at Cell-Specific Times

Papadimitriou, C., Holmes, C. D. & Snyder, L. H., Sep 1 2021, In: Cerebral Cortex. 31, 9, p. 4206-4219 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Profiling sensory neuron microenvironment after peripheral and central axon injury reveals key pathways for neural repair

Avraham, O., Feng, R., Ewan, E. E., Rustenhoven, J., Zhao, G. & Cavalli, V., Sep 2021, In: eLife. 10, e68457.

Research output: Contribution to journal › Article › peer-review

Open Access

70 Scopus citations

Rats use memory confidence to guide decisions

Joo, H. R., Liang, H., Chung, J. E., Geaghan-Breiner, C., Fan, J. L., Nachman, B. P., Kepecs, A. & Frank, L. M., Oct 25 2021, In: Current Biology. 31, 20, p. 4571-4583.e4

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Reply to: Clusters of flowstone ages are not supported by statistical evidence

Pickering, R., Herries, A. I. R., Woodhead, J. D., Hellstrom, J. C., Green, H. E., Paul, B., Ritzman, T., Strait, D. S., Schoville, B. J. & Hancox, J., Jun 17 2021, In: Nature. 594, 7863, p. E11

Research output: Contribution to journal › Letter › peer-review

Resident cardiac macrophages mediate adaptive myocardial remodeling

Wong, N. R., Mohan, J., Kopecky, B. J., Guo, S., Du, L., Leid, J., Feng, G., Lokshina, I., Dmytrenko, O., Luehmann, H., Bajpai, G., Ewald, L., Bell, L., Patel, N., Bredemeyer, A., Weinheimer, C. J., Nigro, J. M., Kovacs, A., Morimoto, S. & Bayguinov, P. O. & 10 others, Fisher, M. R., Stump, W. T., Greenberg, M., Fitzpatrick, J. A. J., Epelman, S., Kreisel, D., Sah, R., Liu, Y., Hu, H. & Lavine, K. J., Sep 14 2021, In: Immunity. 54, 9, p. 2072-2088.e7

Research output: Contribution to journal › Article › peer-review

141 Scopus citations

SARS-CoV-2 Infects Human Engineered Heart Tissues and Models COVID-19 Myocarditis

Bailey, A. L., Dmytrenko, O., Greenberg, L., Bredemeyer, A. L., Ma, P., Liu, J., Penna, V., Winkler, E. S., Sviben, S., Brooks, E., Nair, A. P., Heck, K. A., Rali, A. S., Simpson, L., Saririan, M., Hobohm, D., Stump, W. T., Fitzpatrick, J. A., Xie, X. & Zhang, X. & 9 others, Shi, P. Y., Hinson, J. T., Gi, W. T., Schmidt, C., Leuschner, F., Lin, C. Y., Diamond, M. S., Greenberg, M. J. & Lavine, K. J., Apr 2021, In: JACC: Basic to Translational Science. 6, 4, p. 331-345 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

135 Scopus citations

Sensory Percepts Elicited by Chronic Macro-Sieve Electrode Stimulation of the Rat Sciatic Nerve

Chandra, N. S., McCarron, W. M., Yan, Y., Ruiz, L. C., Sallinger, E. G., Birenbaum, N. K., Burton, H., Green, L., Moran, D. W., Ray, W. Z. & MacEwan, M. R., Oct 7 2021, In: Frontiers in Neuroscience. 15, 758427.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Size-Dependent Effective Diffusivity in Healthy Human and Porcine Joint Synovium

Guang, Y., Davis, A. L., McGrath, T. M., Pham, C. T. N., Fitzpatrick, J. A. J. & Setton, L. A., Apr 2021, In: Annals of biomedical engineering. 49, 4, p. 1245-1256 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Sleep drive reconfigures wake-promoting clock circuitry to regulate adaptive behavior

Klose, M. K. & Shaw, P. J., Jun 2021, In: PLoS biology. 19, 6, 3001324.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Spinal V1 neurons inhibit motor targets locally and sensory targets distally

Sengupta, M., Daliparthi, V., Roussel, Y., Bui, T. V. & Bagnall, M. W., Sep 13 2021, In: Current Biology. 31, 17, p. 3820-3833.e4

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Spontaneous and evoked activity patterns diverge over development

Avitan, L., Pujic, Z., Mölter, J., Zhu, S., Sun, B. & Goodhill, G. J., 2021, In: eLife. 10, e61942.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

Striatal dopamine mediates hallucination-like perception in mice

Schmack, K., Bosc, M., Ott, T., Sturgill, J. F. & Kepecs, A., Apr 2 2021, In: Science. 372, 6537, 51.

Research output: Contribution to journal › Article › peer-review

138 Scopus citations

Structural mechanism of SARS-CoV-2 neutralization by two murine antibodies targeting the RBD

Errico, J. M., Zhao, H., Chen, R. E., Liu, Z., Case, J. B., Ma, M., Schmitz, A. J., Rau, M. J., Fitzpatrick, J. A. J., Shi, P. Y., Diamond, M. S., Whelan, S. P. J., Ellebedy, A. H. & Fremont, D. H., Oct 26 2021, In: Cell Reports. 37, 4, 109881.

Research output: Contribution to journal › Article › peer-review

Open Access

18 Scopus citations

Targeted Therapy to β3 Integrin Reduces Chemoresistance in Breast Cancer Bone Metastases

Fox, G. C., Su, X., Davis, J. L., Xu, Y., Kwakwa, K. A., Ross, M. H., Fontana, F., Xiang, J., Esser, A. K., Cordell, E., Pagliai, K., Dang, H. X., Sivapackiam, J., Stewart, S. A., Maher, C. A., Bakewell, S. J., Fitzpatrick, J. A. J., Sharma, V., Achilefu, S. & Veis, D. J. & 2 others, Lanza, G. M. & Weilbaecher, K. N., Jun 2021, In: Molecular Cancer Therapeutics. 20, 6, p. 1183-1198 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

The evolution, formation and connectivity of the anterior commissure

Fenlon, L. R., Suarez, R., Lynton, Z. & Richards, L. J., Oct 2021, In: Seminars in Cell and Developmental Biology. 118, p. 50-59 10 p.

Research output: Contribution to journal › Review article › peer-review

18 Scopus citations

The Human Connectome Project: A retrospective

Elam, J. S., Glasser, M. F., Harms, M. P., Sotiropoulos, S. N., Andersson, J. L. R., Burgess, G. C., Curtiss, S. W., Oostenveld, R., Larson-Prior, L. J., Schoffelen, J. M., Hodge, M. R., Cler, E. A., Marcus, D. M., Barch, D. M., Yacoub, E., Smith, S. M., Ugurbil, K. & Van Essen, D. C., Dec 1 2021, In: NeuroImage. 244, 118543.

Research output: Contribution to journal › Review article › peer-review

165 Scopus citations

The International Brain Initiative: enabling collaborative science

Quaglio, G., Toia, P., Moser, E. I., Karapiperis, T., Amunts, K., Okabe, S., Poo, M. M., Rah, J. C., Koninck, Y. D., Ngai, J., Richards, L. & Bjaalie, J. G., Dec 2021, In: The Lancet Neurology. 20, 12, p. 985-986 2 p.

Research output: Contribution to journal › Article › peer-review

10 Scopus citations

The Kinase Specificity of Protein Kinase Inhibitor Peptide

Chen, Y. & Sabatini, B. L., Jan 29 2021, In: Frontiers in Pharmacology. 12, 632815.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

The nonhuman primate neuroimaging and neuroanatomy project

Hayashi, T., Hou, Y., Glasser, M. F., Autio, J. A., Knoblauch, K., Inoue-Murayama, M., Coalson, T., Yacoub, E., Smith, S., Kennedy, H. & Van Essen, D. C., Apr 1 2021, In: NeuroImage. 229, 117726.

Research output: Contribution to journal › Article › peer-review

Open Access

49 Scopus citations

Tropism of Severe Acute Respiratory Syndrome Coronavirus 2 for Barrett's Esophagus May Increase Susceptibility to Developing Coronavirus Disease 2019

Jin, R. U., Brown, J. W., Li, Q. K., Bayguinov, P. O., Wang, J. S. & Mills, J. C., May 2021, In: Gastroenterology. 160, 6, p. 2165-2168.e4

Research output: Contribution to journal › Short survey › peer-review

Open Access

7 Scopus citations

Unsupervised quantification of naturalistic animal behaviors for gaining insight into the brain

McCullough, M. H. & Goodhill, G. J., Oct 2021, In: Current Opinion in Neurobiology. 70, p. 89-100 12 p.

Research output: Contribution to journal › Review article › peer-review

18 Scopus citations

Verbal Adynamia and Conceptualization in Partial Rhombencephalosynapsis and Corpus Callosum Dysgenesis

Barker, M. S., Knight, J. L., Dean, R. J., Mandelstam, S., Richards, L. J. & Robinson, G. A., Mar 1 2021, In: Cognitive and Behavioral Neurology. 34, 1, p. 38-52 15 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Visual prototypes in the ventral stream are attuned to complexity and gaze behavior

Rose, O., Johnson, J., Wang, B. & Ponce, C. R., Dec 2021, In: Nature communications. 12, 1, 6723.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Weekend light shifts evoke persistent drosophila circadian neural network desynchrony

Nave, C., Roberts, L., Hwu, P., Estrella, J. D., Vo, T. C., Nguyen, T. H., Bui, T. T., Rindner, D. J., Pervolarakis, N., Shaw, P. J., Leise, T. L. & Holmes, T. C., Jun 16 2021, In: Journal of Neuroscience. 41, 24, p. 5173-5189 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

What Blindsight Means for the Neural Correlates of Consciousness

Barkasi, M., 2021, In: Journal of Consciousness Studies. 28, 11-12, p. 7-30 24 p.

Research output: Contribution to journal › Article › peer-review

What should the sensorimotor enactivist say about dreams?

Barkasi, M., 2021, In: Philosophical Explorations. 24, 2, p. 243-261 19 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Zebrafish Chromosome 14 Gene Differential Expression in the fmr1^hu2787 Model of Fragile X Syndrome

Barthelson, K., Baer, L., Dong, Y., Hand, M., Pujic, Z., Newman, M., Goodhill, G. J., Richards, R. I., Pederson, S. M. & Lardelli, M., May 31 2021, In: Frontiers in Genetics. 12, 625466.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

2020

A 2020 view of tension-based cortical morphogenesis

van Essen, D. C., Dec 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 52, p. 32868-32879 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

74 Scopus citations

Accelerating the Evolution of Nonhuman Primate Neuroimaging

The PRIMatE Data Exchange (PRIME-DE) Global Collaboration Workshop and Consortium, Feb 19 2020, In: Neuron. 105, 4, p. 600-603 4 p.

Research output: Contribution to journal › Article › peer-review

79 Scopus citations

A Dedicated Evolutionarily Conserved Molecular Network Licenses Differentiated Cells to Return to the Cell Cycle

Miao, Z. F., Lewis, M. A., Cho, C. J., Adkins-Threats, M., Park, D., Brown, J. W., Sun, J. X., Burclaff, J. R., Kennedy, S., Lu, J., Mahar, M., Vietor, I., Huber, L. A., Davidson, N. O., Cavalli, V., Rubin, D. C., Wang, Z. N. & Mills, J. C., Oct 26 2020, In: Developmental cell. 55, 2, p. 178-194.e7

Research output: Contribution to journal › Article › peer-review

Open Access

56 Scopus citations

A Domain-General Cognitive Core Defined in Multimodally Parcellated Human Cortex

Assem, M., Glasser, M. F., Van Essen, D. C. & Duncan, J., Jun 30 2020, In: Cerebral Cortex. 30, 8, p. 4361-4380 20 p.

Research output: Contribution to journal › Article › peer-review

Open Access

159 Scopus citations

Ageing hallmarks exhibit organ-specific temporal signatures

The Tabula Muris Consortium, Jul 23 2020, In: Nature. 583, 7817, p. 596-602 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

370 Scopus citations

Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome

Constantin, L., Poulsen, R. E., Scholz, L. A., Favre-Bulle, I. A., Taylor, M. A., Sun, B., Goodhill, G. J., Vanwalleghem, G. C. & Scott, E. K., Sep 16 2020, In: BMC Biology. 18, 1, 125.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

Altered structural connectivity networks in a mouse model of complete and partial dysgenesis of the corpus callosum

IRC5 Consortium, Aug 15 2020, In: NeuroImage. 217, 116868.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

A Modular Setup to Run a Large Line of Behavioral Testing in Mice in a Single Space

Manno, R., Witte, J. & Papouin, T., Sep 1 2020, In: Current Protocols in Neuroscience. 93, 1, e102.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

An Open Resource for Non-human Primate Optogenetics

Tremblay, S., Acker, L., Afraz, A., Albaugh, D. L., Amita, H., Andrei, A. R., Angelucci, A., Aschner, A., Balan, P. F., Basso, M. A., Benvenuti, G., Bohlen, M. O., Caiola, M. J., Calcedo, R., Cavanaugh, J., Chen, Y., Chen, S., Chernov, M. M., Clark, A. M. & Dai, J. & 78 others, Debes, S. R., Deisseroth, K., Desimone, R., Dragoi, V., Egger, S. W., Eldridge, M. A. G., El-Nahal, H. G., Fabbrini, F., Federer, F., Fetsch, C. R., Fortuna, M. G., Friedman, R. M., Fujii, N., Gail, A., Galvan, A., Ghosh, S., Gieselmann, M. A., Gulli, R. A., Hikosaka, O., Hosseini, E. A., Hu, X., Hüer, J., Inoue, K. I., Janz, R., Jazayeri, M., Jiang, R., Ju, N., Kar, K., Klein, C., Kohn, A., Komatsu, M., Maeda, K., Martinez-Trujillo, J. C., Matsumoto, M., Maunsell, J. H. R., Mendoza-Halliday, D., Monosov, I. E., Muers, R. S., Nurminen, L., Ortiz-Rios, M., O'Shea, D. J., Palfi, S., Petkov, C. I., Pojoga, S., Rajalingham, R., Ramakrishnan, C., Remington, E. D., Revsine, C., Roe, A. W., Sabes, P. N., Saunders, R. C., Scherberger, H., Schmid, M. C., Schultz, W., Seidemann, E., Senova, Y. S., Shadlen, M. N., Sheinberg, D. L., Siu, C., Smith, Y., Solomon, S. S., Sommer, M. A., Spudich, J. L., Stauffer, W. R., Takada, M., Tang, S., Thiele, A., Treue, S., Vanduffel, W., Vogels, R., Whitmire, M. P., Wichmann, T., Wurtz, R. H., Xu, H., Yazdan-Shahmorad, A., Shenoy, K. V., DiCarlo, J. J. & Platt, M. L., Dec 23 2020, In: Neuron. 108, 6, p. 1075-1090.e6

Research output: Contribution to journal › Article › peer-review

Open Access

76 Scopus citations

Anterior Cingulate Cortex and the Control of Dynamic Behavior in Primates

Monosov, I. E., Haber, S. N., Leuthardt, E. C. & Jezzini, A., Dec 7 2020, In: Current Biology. 30, 23, p. R1442-R1454

Research output: Contribution to journal › Review article › peer-review

Open Access

62 Scopus citations

A single-cell transcriptomic atlas characterizes ageing tissues in the mouse

The Tabula Muris Consortium, Jul 23 2020, In: Nature. 583, 7817, p. 590-595 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

697 Scopus citations

Assaying three-dimensional cellular architecture using X-ray tomographic and correlated imaging approaches

Bayguinov, P. O., Fisher, M. R. & Fitzpatrick, J. A. J., Nov 13 2020, In: Journal of Biological Chemistry. 295, 46, p. 15782-15793 12 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

11 Scopus citations

Astrocyte deletion of α2-Na/K ATPase triggers episodic motor paralysis in mice via a metabolic pathway

Smith, S. E., Chen, X., Brier, L. M., Bumstead, J. R., Rensing, N. R., Ringel, A. E., Shin, H., Oldenborg, A., Crowley, J. R., Bice, A. R., Dikranian, K., Ippolito, J. E., Haigis, M. C., Papouin, T., Zhao, G., Wong, M., Culver, J. P. & Bonni, A., Dec 2020, In: Nature communications. 11, 1, 6164.

Research output: Contribution to journal › Article › peer-review

Open Access

24 Scopus citations

Author Correction: Differential neural dynamics underlying pragmatic and semantic affordance processing in macaque ventral premotor cortex (Scientific Reports, (2019), 9, 1, (11700), 10.1038/s41598-019-48216-y)

Maranesi, M., Bruni, S., Livi, A., Donnarumma, F., Pezzulo, G. & Bonini, L., Dec 1 2020, In: Scientific reports. 10, 1, 5365.

Research output: Contribution to journal › Comment/debate

Open Access

Behavioral Signatures of a Developing Neural Code

Avitan, L., Pujic, Z., Mölter, J., McCullough, M., Zhu, S., Sun, B., Myhre, A. E. & Goodhill, G. J., Sep 7 2020, In: Current Biology. 30, 17, p. 3352-3363.e5

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

Behavior- and Modality-General Representation of Confidence in Orbitofrontal Cortex

Masset, P., Ott, T., Lak, A., Hirokawa, J. & Kepecs, A., Jul 9 2020, In: Cell. 182, 1, p. 112-126.e18

Research output: Contribution to journal › Article › peer-review

Open Access

61 Scopus citations

Callosal agenesis and congenital mirror movements: outcomes associated with DCC mutations

IRC5 Consortium, Jun 1 2020, In: Developmental Medicine and Child Neurology. 62, 6, p. 758-762 5 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Central Vestibular Tuning Arises from Patterned Convergence of Otolith Afferents

Liu, Z., Kimura, Y., Higashijima, S. I., Hildebrand, D. G. C., Morgan, J. L. & Bagnall, M. W., Nov 25 2020, In: Neuron. 108, 4, p. 748-762.e4

Research output: Contribution to journal › Article › peer-review

Open Access

22 Scopus citations

Chemical effects of diceCT staining protocols on fluid-preserved avian specimens

Early, C. M., Morhardt, A. C., Cleland, T. P., Milensky, C. M., Kavich, G. M. & James, H. F., Sep 2020, In: PloS one. 15, 9 September, e0238783.

Research output: Contribution to journal › Article › peer-review

Open Access

26 Scopus citations

Chemical mutagenesis of a GPCR ligand: Detoxifying "inflammo-attraction" to direct therapeutic stem cell migration

Lee, J. P., Zhang, R., Yan, M., Duggineni, S., Wakeman, D. R., Niles, W. L., Feng, Y., Chen, J., Hamblin, M. H., Han, E. B., Gonzalez, R., Fang, X., Zhu, Y., Wang, J., Xu, Y., Wenger, D. A., Seyfried, T. N., An, J., Sidman, R. L. & Huang, Z. & 1 others, Snyder, E. Y., Dec 8 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 49, p. 31177-31188 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

Combined Experimental Approach and Finite Element Modeling of Small Molecule Transport through Joint Synovium to Measure Effective Diffusivity

Guang, Y., Mcgrath, T. M., Klug, N. R., Nims, R. J., Shih, C. C., Bayguinov, P. O., Guilak, F., Pham, C. T. N., Fitzpatrick, J. A. J. & Setton, L. A., Apr 1 2020, In: Journal of Biomechanical Engineering. 142, 4, 041010.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Department of Neuroscience

Research output

Search results