Department of Mechanical Engineering & Materials Science

2016

Magnetically actuated cell-laden microscale hydrogels for probing strain-induced cell responses in three dimensions

Li, Y., Huang, G., Gao, B., Li, M., Genin, G. M., Lu, T. J. & Xu, F., 2016, In: NPG Asia Materials. 8, 1, e238.

Research output: Contribution to journal › Article › peer-review

Open Access

Magnetic resonance elastography of slow and fast shear waves illuminates differences in shear and tensile moduli in anisotropic tissue

Schmidt, J. L., Tweten, D. J., Benegal, A. N., Walker, C. H., Portnoi, T. E., Okamoto, R. J., Garbow, J. R. & Bayly, P. V., May 3 2016, In: Journal of Biomechanics. 49, 7, p. 1042-1049 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

53 Scopus citations

Mixed H-Infinity and Passive Filtering for Discrete Fuzzy Neural Networks With Stochastic Jumps and Time Delays

Shi, P., Zhang, Y., Chadli, M. & Agarwal, R. K., Apr 2016, In: IEEE Transactions on Neural Networks and Learning Systems. 27, 4, p. 903-909 7 p., 7105419.

Research output: Contribution to journal › Article › peer-review

249 Scopus citations

Monodispersed calcium carbonate nanoparticles modulate local pH and inhibit tumor growth: In vivo

Som, A., Raliya, R., Tian, L., Akers, W., Ippolito, J. E., Singamaneni, S., Biswas, P. & Achilefu, S., Jul 7 2016, In: Nanoscale. 8, 25, p. 12639-12647 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

133 Scopus citations

Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success

Yankeelov, T. E., An, G., Saut, O., Luebeck, E. G., Popel, A. S., Ribba, B., Vicini, P., Zhou, X., Weis, J. A., Ye, K. & Genin, G. M., Sep 1 2016, In: Annals of biomedical engineering. 44, 9, p. 2626-2641 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

60 Scopus citations

Network-based event-triggered filtering for markovian jump systems

Wang, H., Shi, P. & Agarwal, R. K., 2016, In: International Journal of Control. 89, 6, p. 1096-1110 15 p.

Research output: Contribution to journal › Article › peer-review

56 Scopus citations

Novel methodology for characterizing regional variations in the material properties of murine aortas

Bersi, M. R., Bellini, C., Di Achille, P., Humphrey, J. D., Genovese, K. & Avril, S., Jul 1 2016, In: Journal of Biomechanical Engineering. 138, 7, 071005.

Research output: Contribution to journal › Article › peer-review

75 Scopus citations

Numerical simulation and optimization of CO₂-enhanced water recovery by employing a genetic algorithm

Liu, D., Agarwal, R. & Li, Y., Oct 1 2016, In: Journal of Cleaner Production. 133, p. 994-1007 14 p.

Research output: Contribution to journal › Article › peer-review

29 Scopus citations

Numerical simulation and optimization of CO₂ utilization for enhanced oil recovery from depleted reservoirs

Safi, R., Agarwal, R. K. & Banerjee, S., Apr 22 2016, In: Chemical Engineering Science. 144, p. 30-38 9 p.

Research output: Contribution to journal › Article › peer-review

71 Scopus citations

Numerical simulation of long-term storage of CO₂ in Yanchang shale reservoir of the Ordos basin in China

Liu, D., Li, Y. & Agarwal, R. K., Nov 15 2016, In: Chemical Geology. 440, p. 288-305 18 p.

Research output: Contribution to journal › Article › peer-review

47 Scopus citations

Numerical simulation of water-landing performance of a regional aircraft

Qu, Q., Liu, C., Liu, P., Guo, B. & Agarwal, R. K., 2016, In: Journal of Aircraft. 53, 6, p. 1680-1689 10 p.

Research output: Contribution to journal › Article › peer-review

29 Scopus citations

Numerical simulation of water spray caused by a rolling airplane tire

Qu, Q., Zhang, F., Liu, P. & Agarwal, R. K., 2016, In: Journal of Aircraft. 53, 1, p. 182-188 7 p.

Research output: Contribution to journal › Article › peer-review

19 Scopus citations

Numerical study of transient deformation and drag characteristics of a decelerating droplet

Qu, Q., Ma, P., Liu, P., Li, S. & Agarwal, R. K., 2016, In: AIAA Journal. 54, 2, p. 490-505 16 p.

Research output: Contribution to journal › Article › peer-review

10 Scopus citations

Numerical study of water impact of an elastic cylindrical shell

Qu, Q., Wang, R., Guo, H., Liu, P. & Agarwal, R. K., 2016, In: AIAA Journal. 54, 10, p. 3295-3302 8 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

On fuzzy ellipsoid numbers and membership functions

Wang, G., Shi, P., Agarwal, R. K. & Shi, Y., Jun 13 2016, In: Journal of Intelligent and Fuzzy Systems. 31, 1, p. 391-403 13 p.

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

On the accuracy and fitting of transversely isotropic material models

Feng, Y., Okamoto, R. J., Genin, G. M. & Bayly, P. V., Aug 1 2016, In: Journal of the Mechanical Behavior of Biomedical Materials. 61, p. 554-566 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

37 Scopus citations

Particle Image Velocimetry Measurements and Performance Experiments in a Compact Return Diffuser Under Different Rotating Speed

Zhou, L., Shi, W. D., Li, W. & Agarwal, R., Feb 1 2016, In: Experimental Techniques. 40, 1, p. 245-252 8 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

PEGylated Artificial Antibodies: Plasmonic Biosensors with Improved Selectivity

Luan, J., Liu, K. K., Tadepalli, S., Jiang, Q., Morrissey, J. J., Kharasch, E. D. & Singamaneni, S., Sep 14 2016, In: ACS Applied Materials and Interfaces. 8, 36, p. 23509-23516 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

38 Scopus citations

Plasmonic Biofoam: A Versatile Optically Active Material

Tian, L., Luan, J., Liu, K. K., Jiang, Q., Tadepalli, S., Gupta, M. K., Naik, R. R. & Singamaneni, S., Jan 13 2016, In: Nano Letters. 16, 1, p. 609-616 8 p.

Research output: Contribution to journal › Article › peer-review

165 Scopus citations

Plasmonic Nanogels for Unclonable Optical Tagging

Tian, L., Liu, K. K., Fei, M., Tadepalli, S., Cao, S., Geldmeier, J. A., Tsukruk, V. V. & Singamaneni, S., Feb 24 2016, In: ACS Applied Materials and Interfaces. 8, 6, p. 4031-4041 11 p.

Research output: Contribution to journal › Article › peer-review

43 Scopus citations

Plasmonic paper: A porous and flexible substrate enabling nanoparticle-based combinatorial chemistry

Schmucker, A. L., Tadepalli, S., Liu, K. K., Sullivan, C. J., Singamaneni, S. & Naik, R. R., 2016, In: RSC Advances. 6, 5, p. 4136-4144 9 p.

Research output: Contribution to journal › Article › peer-review

22 Scopus citations

Polarization-Dependent Surface-Enhanced Raman Scattering Activity of Anisotropic Plasmonic Nanorattles

Liu, K. K., Tadepalli, S., Kumari, G., Banerjee, P., Tian, L., Jain, P. K. & Singamaneni, S., Aug 4 2016, In: Journal of Physical Chemistry C. 120, 30, p. 16899-16906 8 p.

Research output: Contribution to journal › Article › peer-review

18 Scopus citations

RAS one-equation turbulence model with non-singular eddy-viscosity coefficient

Rahman, M. M., Agarwal, R. K. & Siikonen, T., Feb 7 2016, In: International Journal of Computational Fluid Dynamics. 30, 2, p. 89-106 18 p.

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

Remodeling by fibroblasts alters the rate-dependent mechanical properties of collagen

Babaei, B., Davarian, A., Lee, S. L., Pryse, K. M., McConnaughey, W. B., Elson, E. L. & Genin, G. M., Jun 1 2016, In: Acta Biomaterialia. 37, p. 28-37 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

34 Scopus citations

Scattering of Cell Clusters in Confinement

Pathak, A., Oct 4 2016, In: Biophysical Journal. 111, 7, p. 1496-1506 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Self-Powered Forward Error-Correcting Biosensor Based on Integration of Paper-Based Microfluidics and Self-Assembled Quick Response Codes

Yuan, M., Liu, K. K., Singamaneni, S. & Chakrabartty, S., Oct 2016, In: IEEE Transactions on Biomedical Circuits and Systems. 10, 5, p. 963-971 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

Silk-Encapsulated Plasmonic Biochips with Enhanced Thermal Stability

Wang, C., Luan, J., Tadepalli, S., Liu, K. K., Morrissey, J. J., Kharasch, E. D., Naik, R. R. & Singamaneni, S., Oct 12 2016, In: ACS Applied Materials and Interfaces. 8, 40, p. 26493-26500 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Simulation and analysis of lithology heterogeneity on CO₂ geological sequestration in deep saline aquifer: a case study of the Ordos Basin

Liu, D., Li, Y., Song, S. & Agarwal, R., Jun 1 2016, In: Environmental Earth Sciences. 75, 11, 962.

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Simulation and optimization of enhanced gas recovery utilizing CO₂

Biagi, J., Agarwal, R. & Zhang, Z., Jan 1 2016, In: Energy. 94, p. 78-86 9 p.

Research output: Contribution to journal › Article › peer-review

45 Scopus citations

Steady dynein forces induce flutter instability and propagating waves in mathematical models of flagella

Bayly, P. V. & Dutcher, S. K., Oct 1 2016, In: Journal of the Royal Society, Interface. 13, 123

Research output: Contribution to journal › Article › peer-review

Open Access

59 Scopus citations

Structure-Function Relationships for Surface-Enhanced Raman Spectroscopy-Active Plasmonic Paper

Ross, M. B., Ashley, M. J., Schmucker, A. L., Singamaneni, S., Naik, R. R., Schatz, G. C. & Mirkin, C. A., Sep 22 2016, In: Journal of Physical Chemistry C. 120, 37, p. 20789-20797 9 p.

Research output: Contribution to journal › Article › peer-review

27 Scopus citations

The concentration of stress at the rotator cuff tendon-to-bone attachment site is conserved across species

Saadat, F., Deymier, A. C., Birman, V., Thomopoulos, S. & Genin, G. M., Sep 1 2016, In: Journal of the Mechanical Behavior of Biomedical Materials. 62, p. 24-32 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

27 Scopus citations

Topographic confinement of epithelial clusters induces epithelial-to-mesenchymal transition in compliant matrices

Nasrollahi, S. & Pathak, A., Jan 5 2016, In: Scientific reports. 6, 18831.

Research output: Contribution to journal › Article › peer-review

Open Access

50 Scopus citations

Tunability of collagen matrix mechanical properties via multiple modes of mineralization

Smith, L. J., Deymier, A. C., Boyle, J. J., Li, Z., Linderman, S. W., Pasteris, J. D., Xia, Y., Genin, G. M. & Thomopoulos, S., Feb 6 2016, In: Interface Focus. 6, 1, 20150070.

Research output: Contribution to journal › Article › peer-review

Open Access

27 Scopus citations

2015

3D Printed Programmable Release Capsules

Gupta, M. K., Meng, F., Johnson, B. N., Kong, Y. L., Tian, L., Yeh, Y. W., Masters, N., Singamaneni, S. & McAlpine, M. C., Aug 12 2015, In: Nano Letters. 15, 8, p. 5321-5329 9 p.

Research output: Contribution to journal › Article › peer-review

150 Scopus citations

Abnormal mechanosensing and cofilin activation promote the progression of ascending aortic aneurysms in mice

Yamashiro, Y., Papke, C. L., Kim, J., Ringuette, L. J., Zhang, Q. J., Liu, Z. P., Mirzaei, H., Wagenseil, J. E., Davis, E. C. & Yanagisawa, H., Oct 20 2015, In: Science signaling. 8, 399, p. ra105

Research output: Contribution to journal › Article › peer-review

40 Scopus citations

A discrete spectral analysis for determining quasi-linear viscoelastic properties of biological materials

Babaei, B., Abramowitch, S. D., Elson, E. L., Thomopoulos, S. & Genin, G. M., Dec 6 2015, In: Journal of the Royal Society Interface. 12, 113, 20150707.

Research output: Contribution to journal › Article › peer-review

Open Access

30 Scopus citations

Airfoil aerodynamics in ground effect for wide range of angles of attack

Qu, Q., Wang, W., Liu, P. & Agarwal, R. K., 2015, In: AIAA Journal. 53, 4, p. 1048-1061 14 p.

Research output: Contribution to journal › Article › peer-review

93 Scopus citations

Allometry of the tendon enthesis: Mechanisms of load transfer between tendon and bone

Deymier-Black, A. C., Pasteris, J. D., Genin, G. M. & Thomopoulos, S., Nov 1 2015, In: Journal of Biomechanical Engineering. 137, 11, 111005.

Research output: Contribution to journal › Article › peer-review

Open Access

54 Scopus citations

A methodology for predicting solar power incidence on airfoils and their optimization for solar-powered airplanes

Marques Hobold, G. & Agarwal, R. K., Jun 5 2015, In: Proceedings of the Institution of Mechanical Engineers, Part G: Journal of Aerospace Engineering. 229, 7, p. 1267-1279 13 p.

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Analysis of unstable modes distinguishes mathematical models of flagellar motion

Bayly, P. V. & Wilson, K. S., May 6 2015, In: Journal of the Royal Society Interface. 12, 106, 20150124.

Research output: Contribution to journal › Article › peer-review

Open Access

34 Scopus citations

Bio-Chemo-Mechanical Models of Vascular Mechanics

Kim, J. & Wagenseil, J. E., Jul 22 2015, In: Annals of biomedical engineering. 43, 7, p. 1477-1487 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Bio-Enabled Gold Superstructures with Built-In and Accessible Electromagnetic Hotspots

Tian, L., Fei, M., Tadepalli, S., Morrissey, J. J., Kharasch, E. D. & Singamaneni, S., Jul 2015, In: Advanced Healthcare Materials. 4, 10, p. 1502-1509 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

18 Scopus citations

Computational fluid dynamics analysis of open-rotor engines using an actuator disk model

Farrar, B. & Agarwal, R., 2015, In: Journal of Propulsion and Power. 31, 3, p. 989-993 5 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Computation of flow in S ducts with wray-agarwal one-equation turbulence model

Han, X., Wray, T. J., Fiola, C. & Agarwal, R. K., 2015, In: Journal of Guidance, Control, and Dynamics. 38, 6, p. 1338-1349 12 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Computation of rarefied hypersonic flows using modified form of conventional Burnett equations

Zhao, W., Chen, W., Agarwal, R. K. & Boyd, I., 2015, In: Journal of Spacecraft and Rockets. 52, 3, p. 789-803 15 p.

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Critical buckling pressure in mouse carotid arteries with altered elastic fibers

Luetkemeyer, C. M., James, R. H., Devarakonda, S. T., Le, V. P., Liu, Q., Han, H. C. & Wagenseil, J. E., Jun 1 2015, In: Journal of the Mechanical Behavior of Biomedical Materials. 46, p. 69-82 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access