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  • 2014

    Transcription factor regulation and chromosome dynamics during pseudohyphal growth

    Mayhew, D. & Mitra, R. D., Sep 1 2014, In: Molecular biology of the cell. 25, 17, p. 2669-2676 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • Validation of a next-generation sequencing assay for clinical molecular oncology

    Cottrell, C. E., Al-Kateb, H., Bredemeyer, A. J., Duncavage, E. J., Spencer, D. H., Abel, H. J., Lockwood, C. M., Hagemann, I. S., O'Guin, S. M., Burcea, L. C., Sawyer, C. S., Oschwald, D. M., Stratman, J. L., Sher, D. A., Johnson, M. R., Brown, J. T., Cliften, P. F., George, B., McIntosh, L. D. & Shrivastava, S. & 12 others, Nguyen, T. T., Payton, J. E., Watson, M. A., Crosby, S. D., Head, R. D., Mitra, R. D., Nagarajan, R., Kulkarni, S., Seibert, K., Virgin IV, H. W., Milbrandt, J. & Pfeifer, J. D., Jan 2014, In: Journal of Molecular Diagnostics. 16, 1, p. 89-105 17 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    162 Scopus citations

  • Variants in two adjacent genes, EGLN2 and CYP2A6, influence smoking behavior related to disease risk via different mechanisms

    Bloom, A. J., Baker, T. B., Chen, L. S., Breslau, N., Hatsukami, D., Bierut, L. J. & Goate, A., Jan 2014, In: Human molecular genetics. 23, 2, p. 555-561 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations

  • Variants near CHRNB3-CHRNA6 are associated with DSM-5 cocaine use disorder: Evidence for pleiotropy

    Sadler, B., Haller, G., Agrawal, A., Culverhouse, R., Bucholz, K., Brooks, A., Tischfield, J., Johnson, E. O., Edenberg, H., Schuckit, M., Saccone, N., Bierut, L. & Goate, A., Mar 28 2014, In: Scientific reports. 4, 4497.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • Widespread contribution of transposable elements to the innovation of gene regulatory networks

    Sundaram, V., Cheng, Y., Ma, Z., Li, D., Xing, X., Edge, P., Snyder, M. P. & Wang, T., Dec 1 2014, In: Genome research. 24, 12, p. 1963-1976 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    302 Scopus citations

  • WormBase 2014: New views of curated biology

    Harris, T. W., Baran, J., Bieri, T., Cabunoc, A., Chan, J., Chen, W. J., Davis, P., Done, J., Grove, C., Howe, K., Kishore, R., Lee, R., Li, Y., Muller, H. M., Nakamura, C., Ozersky, P., Paulini, M., Raciti, D., Schindelman, G. & Tuli, M. A. & 13 others, Auken, K. V., Wang, D., Wang, X., Williams, G., Wong, J. D., Yook, K., Schedl, T., Hodgkin, J., Berriman, M., Kersey, P., Spieth, J., Stein, L. & Sternberg, P. W., Jan 1 2014, In: Nucleic acids research. 42, D1, p. D789-D793

    Research output: Contribution to journal › Article › peer-review

    Open Access
    127 Scopus citations
  • 2013

    18F-AFETP, 18F-FET, and 18F-FDG imaging of mouse DBT gliomas

    Sai, K. K. S., Huang, C., Yuan, L., Zhou, D., Piwnica-Worms, D., Garbow, J. R., Engelbach, J. A., Mach, R. H., Rich, K. M. & Mcconathy, J., Jul 1 2013, In: Journal of Nuclear Medicine. 54, 7, p. 1120-1126 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Aberrant schwann cell lipid metabolism linked to mitochondrial deficits leads to axon degeneration and neuropathy

    Viader, A., Sasaki, Y., Kim, S., Strickland, A., Workman, C. S., Yang, K., Gross, R. W. & Milbrandt, J., 2013, In: Neuron. 77, 5, p. 886-898 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    189 Scopus citations

  • A compensatory effect upon splicing results in normal function of the CYP2A6*14 allele

    Bloom, A. J., Harari, O., Martinez, M., Zhang, X., McDonald, S. A., Murphy, S. E. & Goate, A., Mar 2013, In: Pharmacogenetics and Genomics. 23, 3, p. 107-116 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • Aldh1L1 is Expressed by Postnatal Neural Stem Cells In Vivo

    Foo, L. C. & Dougherty, J. D., Sep 2013, In: Glia. 61, 9, p. 1533-1541 9 p.

    Research output: Contribution to journal › Article › peer-review

    48 Scopus citations

  • A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry

    Monda, K. L., Chen, G. K., Taylor, K. C., Palmer, C., Edwards, T. L., Lange, L. A., Ng, M. C. Y., Adeyemo, A. A., Allison, M. A., Bielak, L. F., Chen, G., Graff, M., Irvin, M. R., Rhie, S. K., Li, G., Liu, Y., Liu, Y., Lu, Y., Nalls, M. A. & Sun, Y. V. & 188 others, Wojczynski, M. K., Yanek, L. R., Aldrich, M. C., Ademola, A., Amos, C. I., Bandera, E. V., Bock, C. H., Britton, A., Broeckel, U., Cai, Q., Caporaso, N. E., Carlson, C. S., Carpten, J., Casey, G., Chen, W. M., Chen, F., Chen, Y. D. I., Chiang, C. W. K., Coetzee, G. A., Demerath, E., Deming-Halverson, S. L., Driver, R. W., Dubbert, P., Feitosa, M. F., Feng, Y., Freedman, B. I., Gillanders, E. M., Gottesman, O., Guo, X., Haritunians, T., Harris, T., Harris, C. C., Hennis, A. J. M., Hernandez, D. G., McNeill, L. H., Howard, T. D., Howard, B. V., Howard, V. J., Johnson, K. C., Kang, S. J., Keating, B. J., Kolb, S., Kuller, L. H., Kutlar, A., Langefeld, C. D., Lettre, G., Lohman, K., Lotay, V., Lyon, H., Manson, J. E., Maixner, W., Meng, Y. A., Monroe, K. R., Morhason-Bello, I., Murphy, A. B., Mychaleckyj, J. C., Nadukuru, R., Nathanson, K. L., Nayak, U., N'Diaye, A., Nemesure, B., Wu, S. Y., Leske, M. C., Neslund-Dudas, C., Neuhouser, M., Nyante, S., Ochs-Balcom, H., Ogunniyi, A., Ogundiran, T. O., Ojengbede, O., Olopade, O. I., Palmer, J. R., Ruiz-Narvaez, E. A., Palmer, N. D., Press, M. F., Rampersaud, E., Rasmussen-Torvik, L. J., Rodriguez-Gil, J. L., Salako, B., Schadt, E. E., Schwartz, A. G., Shriner, D. A., Siscovick, D., Smith, S. B., Wassertheil-Smoller, S., Speliotes, E. K., Spitz, M. R., Sucheston, L., Taylor, H., Tayo, B. O., Tucker, M. A., Van Den Berg, D. J., Edwards, D. R. V., Wang, Z., Wiencke, J. K., Winkler, T. W., Witte, J. S., Wrensch, M., Wu, X., Yang, J. J., Levin, A. M., Young, T. R., Zakai, N. A., Cushman, M., Zanetti, K. A., Zhao, J. H., Zhao, W., Zheng, Y., Zhou, J., Ziegler, R. G., Zmuda, J. M., Fernandes, J. K., Gilkeson, G. S., Kamen, D. L., Hunt, K. J., Spruill, I. J., Ambrosone, C. B., Ambs, S., Arnett, D. K., Atwood, L., Becker, D. M., Berndt, S. I., Bernstein, L., Blot, W. J., Borecki, I. B., Bottinger, E. P., Bowden, D. W., Burke, G., Chanock, S. J., Cooper, R. S., Ding, J., Duggan, D., Evans, M. K., Fox, C., Garvey, W. T., Bradfield, J. P., Hakonarson, H., Grant, S. F. A., Hsing, A., Chu, L., Hu, J. J., Huo, D., Ingles, S. A., John, E. M., Jordan, J. M., Kabagambe, E. K., Kardia, S. L. R., Kittles, R. A., Goodman, P. J., Klein, E. A., Kolonel, L. N., Le Marchand, L., Liu, S., McKnight, B., Millikan, R. C., Mosley, T. H., Padhukasahasram, B., Williams, L. K., Patel, S. R., Peters, U., Pettaway, C. A., Peyser, P. A., Psaty, B. M., Redline, S., Rotimi, C. N., Rybicki, B. A., Sale, M. M., Schreiner, P. J., Signorello, L. B., Singleton, A. B., Stanford, J. L., Strom, S. S., Thun, M. J., Vitolins, M., Zheng, W., Moore, J. H., Williams, S. M., Ketkar, S., Zhu, X., Zonderman, A. B., Kooperberg, C., Papanicolaou, G. J., Henderson, B. E., Reiner, A. P., Hirschhorn, J. N., Loos, R. J. F., North, K. E. & Haiman, C. A., Jun 2013, In: Nature Genetics. 45, 6, p. 690-696 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    207 Scopus citations

  • A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks

    Kapoor, M., Wang, J. C., Wetherill, L., Le, N., Bertelsen, S., Hinrichs, A. L., Budde, J., Agrawal, A., Bucholz, K., Dick, D., Harari, O., Hesselbrock, V., Kramer, J., Nurnberger, J. I., Rice, J., Saccone, N., Schuckit, M., Tischfield, J., Porjesz, B. & Edenberg, H. J. & 3 others, Bierut, L., Foroud, T. & Goate, A., Oct 2013, In: Human genetics. 132, 10, p. 1141-1151 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    63 Scopus citations

  • A new system for comparative functional genomics of Saccharomyces yeasts

    Caudy, A. A., Guan, Y., Jia, Y., Hansen, C., DeSevo, C., Hayes, A. P., Agee, J., Alvarez-Dominguez, J. R., Arellano, H., Barrett, D., Bauerle, C., Bisaria, N., Bradley, P. H., Scott Breunig, J., Bush, E., Cappel, D., Capra, E., Chen, W., Clore, J. & Combs, P. A. & 54 others, Doucette, C., Demuren, O., Fellowes, P., Freeman, S., Frenkel, E., Gadala-Maria, D., Gawande, R., Glass, D., Grossberg, S., Gupta, A., Hammonds-Odie, L., Hoisos, A., Hsi, J., Hsu, Y. H. H., Inukai, S., Karczewski, K. J., Ke, X., Kojima, M., Leachman, S., Lieber, D., Liebowitz, A., Liu, J., Liu, Y., Martin, T., Mena, J., Mendoza, R., Myhrvold, C., Millian, C., Pfau, S., Raj, S., Rich, M., Rokicki, J., Rounds, W., Salazar, M., Salesi, M., Sharma, R., Silverman, S., Singer, C., Sinha, S., Staller, M., Stern, P., Tang, H., Weeks, S., Weidmann, M., Wolf, A., Young, C., Yuan, J., Crutchfield, C., McClean, M., Murphy, C. T., Llinás, M., Botstein, D., Troyanskaya, O. G. & Dunham, M. J., 2013, In: Genetics. 195, 1, p. 275-287 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    21 Scopus citations

  • An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury.

    Chang, L. W., Viader, A., Varghese, N., Payton, J. E., Milbrandt, J. & Nagarajan, R., 2013, In: Unknown Journal. 14

    Research output: Contribution to journal › Article › peer-review

    Open Access
    32 Scopus citations

  • An invitation to the 16th international congress on photosynthesis research in 2013: opportunities and challenges in the 21st century.

    Blankenship, R. E., Musick, J., Cooley, J., Dutcher, S. & Govindjee, Jul 2013, In: Photosynthesis Research. 115, 2-3, p. 215-218 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • ANKK1, TTC12, and NCAM1 polymorphisms and heroin dependence: Importance of considering drug exposure

    Nelson, E. C., Lynskey, M. T., Heath, A. C., Wray, N., Agrawal, A., Shand, F. L., Henders, A. K., Wallace, L., Todorov, A. A., Schrage, A. J., Saccone, N. L., Madden, P. A. F., Degenhardt, L., Martin, N. G. & Montgomery, G. W., Mar 2013, In: JAMA psychiatry. 70, 3, p. 325-333 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    56 Scopus citations

  • An optimized fluorogenic ADAMTS13 assay with increased sensitivity for the investigation of patients with thrombotic thrombocytopenic purpura

    Muia, J., Gao, W., Haberichter, S. L., Dolatshahi, L., Zhu, J., Westfield, L. A., Covill, S. C., Friedman, K. D. & Sadler, J. E., Aug 2013, In: Journal of Thrombosis and Haemostasis. 11, 8, p. 1511-1518 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    34 Scopus citations

  • An overview of RNA sequence analyses: Structure prediction, ncRNA gene identification, and RNAi design

    Stormo, G. D., Jan 1 2013, In: Current Protocols in Bioinformatics. SUPL.43, 12.1.

    Research output: Contribution to journal › Article › peer-review

    3 Scopus citations

  • Anthranilate Fluorescence Marks a Calcium-Propagated Necrotic Wave That Promotes Organismal Death in C. elegans

    Coburn, C., Allman, E., Mahanti, P., Benedetto, A., Cabreiro, F., Pincus, Z., Matthijssens, F., Araiz, C., Mandel, A., Vlachos, M., Edwards, S. A., Fischer, G., Davidson, A., Pryor, R. E., Stevens, A., Slack, F. J., Tavernarakis, N., Braeckman, B. P., Schroeder, F. C. & Nehrke, K. & 1 others, Gems, D., Jul 2013, In: PLoS biology. 11, 7, e1001613.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    102 Scopus citations

  • Apolipoprotein E and familial longevity

    Schupf, N., Barral, S., Perls, T., Newman, A., Christensen, K., Thyagarajan, B., Province, M., Rossi, W. K. & Mayeux, R., Apr 2013, In: Neurobiology of Aging. 34, 4, p. 1287-1291 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    38 Scopus citations

  • ATHLATES: Accurate typing of human leukocyte antigen through exome sequencing

    Liu, C., Yang, X., Duffy, B., Mohanakumar, T., Mitra, R. D., Zody, M. C. & Pfeifer, J. D., Aug 2013, In: Nucleic acids research. 41, 14, p. e142

    Research output: Contribution to journal › Article › peer-review

    Open Access
    93 Scopus citations

  • CCDC65 Mutation Causes Primary Ciliary Dyskinesia with Normal Ultrastructure and Hyperkinetic Cilia

    Horani, A., Brody, S. L., Ferkol, T. W., Shoseyov, D., Wasserman, M. G., Ta-shma, A., Wilson, K. S., Bayly, P. V., Amirav, I., Cohen-Cymberknoh, M., Dutcher, S. K., Elpeleg, O. & Kerem, E., Aug 26 2013, In: PloS one. 8, 8, e72299.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    102 Scopus citations

  • Combinatorial rules of precursor specification underlying olfactory neuron diversity

    Li, Q., Ha, T. S., Okuwa, S., Wang, Y., Wang, Q., Millard, S. S., Smith, D. P. & Volkan, P. C., Dec 16 2013, In: Current Biology. 23, 24, p. 2481-2490 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    24 Scopus citations

  • Common variants in mendelian kidney disease genes and their association with renal function

    Parsa, A., Fuchsberger, C., Köttgen, A., O'Seaghdha, C. M., Pattaro, C., De Andrade, M., Chasman, D. I., Teumer, A., Endlich, K., Olden, M., Chen, M. H., Tin, A., Kim, Y. J., Taliun, D., Li, M., Feitosa, M., Gorski, M., Yang, Q., Hundertmark, C. & Foster, M. C. & 139 others, Glazer, N., Isaacs, A., Rao, M., Smith, A. V., O'Connell, J. R., Struchalin, M., Tanaka, T., Li, G., Hwang, S. J., Atkinson, E. J., Lohman, K., Cornelis, M. C., Johansson, A., Tönjes, A., Dehghan, A., Couraki, V., Holliday, E. G., Sorice, R., Kutalik, Z., Lehtimäki, T., Esko, T., Deshmukh, H., Ulivi, S., Chu, A. Y., Murgia, F., Trompet, S., Imboden, M., Kollerits, B., Pistis, G., Harris, T. B., Launer, L. J., Aspelund, T., Eiriksdottir, G., Mitchell, B. D., Boerwinkle, E., Schmidt, H., Hofer, E., Hu, F., Demirkan, A., Oostra, B. A., Turner, S. T., Ding, J., Andrews, J. S., Freedman, B. I., Giulianini, F., Koenig, W., Illig, T., Döring, A., Wichmann, H. E., Zgaga, L., Zemunik, T., Boban, M., Minelli, C., Wheeler, H. E., Igl, W., Zaboli, G., Wild, S. H., Wright, A. F., Campbell, H., Ellinghaus, D., Nöthlings, U., Jacobs, G., Biffar, R., Ernst, F., Homuth, G., Kroemer, H. K., Nauck, M., Stracke, S., Völker, U., Völzke, H., Kovacs, P., Stumvoll, M., Mägi, R., Hofman, A., Uitterlinden, A. G., Rivadeneira, F., Aulchenko, Y. S., Polasek, O., Hastie, N., Vitart, V., Helmer, C., Wang, J. J., Stengel, B., Ruggiero, D., Bergmann, S., Kähönen, M., Viikari, J., Nikopensius, T., Province, M., Colhoun, H., Doney, A., Robino, A., Krämer, B. K., Portas, L., Ford, I., Buckley, B. M., Adam, M., Thun, G. A., Paulweber, B., Haun, M., Sala, C., Mitchell, P., Ciullo, M., Vollenweider, P., Raitakari, O., Metspalu, A., Palmer, C., Gasparini, P., Pirastu, M., Jukema, J. W., Probst-Hensch, N. M., Kronenberg, F., Toniolo, D., Gudnason, V., Shuldiner, A. R., Coresh, J., Schmidt, R., Ferrucci, L., Van Duijn, C. M., Borecki, I., Kardia, S. L. R., Liu, Y., Curhan, G. C., Rudan, I., Gyllensten, U., Wilson, J. F., Franke, A., Pramstaller, P. P., Rettig, R., Prokopenko, I., Witteman, J., Hayward, C., Ridker, P. M., Bochud, M., Heid, I. M., Siscovick, D. S., Fox, C. S., Kao, W. L. & Böger, C. A., 2013, In: Journal of the American Society of Nephrology. 24, 12, p. 2105-2117 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations

  • CYP2B6 non-coding variation associated with smoking cessation is also associated with differences in allelic expression, splicing, and nicotine metabolism independent of common amino-acid changes

    Bloom, A. J., Martinez, M., Chen, L. S., Bierut, L. J., Murphy, S. E. & Goate, A., Nov 15 2013, In: PloS one. 8, 11, e79700.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    18 Scopus citations

  • Depleting gene activities in early drosophila embryos with the "maternal-Gal4-shRNA" system

    Staller, M. V., Yan, D., Randklev, S., Bragdon, M. D., Wunderlich, Z. B., Tao, R., Perkins, L. A., De Pace, A. H. & Perrimon, N., Jan 2013, In: Genetics. 193, 1, p. 51-61 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    70 Scopus citations

  • Developmental arrest of Drosophila survival motor neuron (Smn) mutants accounts for differences in expression of minor intron-containing genes

    Garcia, E. L., Lu, Z., Meers, M. P., Praveen, K. & Matera, A. G., Nov 2013, In: RNA. 19, 11, p. 1510-1516 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    40 Scopus citations

  • Development of translating ribosome affinity purification for zebrafish

    Tryon, R. C., Pisat, N., Johnson, S. L. & Dougherty, J. D., Mar 2013, In: Genesis. 51, 3, p. 187-192 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    32 Scopus citations

  • Discovery of Anthelmintic Drug Targets and Drugs Using Chokepoints in Nematode Metabolic Pathways

    Taylor, C. M., Wang, Q., Rosa, B. A., Huang, S. C. C., Powell, K., Schedl, T., Pearce, E. J., Abubucker, S. & Mitreva, M., Aug 2013, In: PLoS pathogens. 9, 8, e1003505.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    72 Scopus citations

  • Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking

    Stephens, S. H., Hartz, S. M., Hoft, N. R., Saccone, N. L., Corley, R. C., Hewitt, J. K., Hopfer, C. J., Breslau, N., Coon, H., Chen, X., Ducci, F., Dueker, N., Franceschini, N., Frank, J., Han, Y., Hansel, N. N., Jiang, C., Korhonen, T., Lind, P. A. & Liu, J. & 106 others, Lyytikäinen, L. P., Michel, M., Shaffer, J. R., Short, S. E., Sun, J., Teumer, A., Thompson, J. R., Vogelzangs, N., Vink, J. M., Wenzlaff, A., Wheeler, W., Yang, B. Z., Aggen, S. H., Balmforth, A. J., Baumeister, S. E., Beaty, T. H., Benjamin, D. J., Bergen, A. W., Broms, U., Cesarini, D., Chatterjee, N., Chen, J., Cheng, Y. C., Cichon, S., Couper, D., Cucca, F., Dick, D., Foroud, T., Furberg, H., Giegling, I., Gillespie, N. A., Gu, F., Hall, A. S., Hällfors, J., Han, S., Hartmann, A. M., Heikkilä, K., Hickie, I. B., Hottenga, J. J., Jousilahti, P., Kaakinen, M., Kähönen, M., Koellinger, P. D., Kittner, S., Konte, B., Landi, M. T., Laatikainen, T., Leppert, M., Levy, S. M., Mathias, R. A., Mcneil, D. W., Medland, S. E., Montgomery, G. W., Murray, T., Nauck, M., North, K. E., Paré, P. D., Pergadia, M., Ruczinski, I., Salomaa, V., Viikari, J., Willemsen, G., Barnes, K. C., Boerwinkle, E., Boomsma, D. I., Caporaso, N., Edenberg, H. J., Francks, C., Gelernter, J., Grabe, H. J., Hops, H., Jarvelin, M. R., Johannesson, M., Kendler, K. S., Lehtimäki, T., Magnusson, P. K. E., Marazita, M. L., Marchini, J., Mitchell, B. D., Nöthen, M. M., Penninx, B. W., Raitakari, O., Rietschel, M., Rujescu, D., Samani, N. J., Schwartz, A. G., Shete, S., Spitz, M., Swan, G. E., Völzke, H., Veijola, J., Wei, Q., Amos, C., Cannon, D. S., Grucza, R., Hatsukami, D., Heath, A., Johnson, E. O., Kaprio, J., Madden, P., Martin, N. G., Stevens, V. L., Weiss, R. B., Kraft, P., Bierut, L. J. & Ehringer, M. A., Dec 2013, In: Genetic Epidemiology. 37, 8, p. 846-859 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    31 Scopus citations

  • DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape

    Xie, M., Hong, C., Zhang, B., Lowdon, R. F., Xing, X., Li, D., Zhou, X., Lee, H. J., Maire, C. L., Ligon, K. L., Gascard, P., Sigaroudinia, M., Tlsty, T. D., Kadlecek, T., Weiss, A., O'Geen, H., Farnham, P. J., Madden, P. A. F., Mungall, A. J. & Tam, A. & 7 others, Kamoh, B., Cho, S., Moore, R., Hirst, M., Marra, M. A., Costello, J. F. & Wang, T., Jul 2013, In: Nature Genetics. 45, 7, p. 836-841 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    172 Scopus citations

  • DNA unmethylome profiling by covalent capture of CpG sites

    Kriukiene, E., Labrie, V., Khare, T., Urbanavičiute, G., Lapinaite, A., Koncevičius, K., Li, D., Wang, T., Pai, S., Ptak, C., Gordevičius, J., Wang, S. C., Petronis, A. & Klimašauskas, S., 2013, In: Nature communications. 4, 2190.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    51 Scopus citations

  • Effects upon in-vivo nicotine metabolism reveal functional variation in FMO3 associated with cigarette consumption

    Bloom, A. J., Murphy, S. E., Martinez, M., Von Weymarn, L. B., Bierut, L. J. & Goate, A., Feb 2013, In: Pharmacogenetics and Genomics. 23, 2, p. 62-68 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    29 Scopus citations

  • Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

    Stevens, M., Cheng, J. B., Li, D., Xie, M., Hong, C., Maire, C. L., Ligon, K. L., Hirst, M., Marra, M. A., Costello, J. F. & Wang, T., Sep 2013, In: Genome research. 23, 9, p. 1541-1553 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    127 Scopus citations

  • Exceptional memory performance in the Long Life Family Study

    Barral, S., Cosentino, S., Costa, R., Andersen, S. L., Christensen, K., Eckfeldt, J. H., Newman, A. B., Perls, T. T., Province, M. A., Hadley, E. C., Rossi, W. K. & Mayeux, R., Nov 2013, In: Neurobiology of Aging. 34, 11, p. 2445-2448 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    19 Scopus citations

  • Expression and function of scalloped during Drosophila development

    Guss, K. A., Benson, M., Gubitosi, N., Brondell, K., Broadie, K. & Skeath, J. B., Jul 2013, In: Developmental Dynamics. 242, 7, p. 874-885 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    16 Scopus citations

  • Families enriched for exceptional longevity also have increased health-span: Findings from the long life family study

    Sebastiani, P., Sun, F. X., Andersen, S. L., Lee, J. H., Wojczynski, M. K., Sanders, J. L., Yashin, A., Newman, A. B. & Perls, T. T., Sep 30 2013, In: Frontiers in Public Health. 1, SEP, p. 38 1 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    58 Scopus citations

  • Flow cytometry-based enrichment for cell shape mutants identifies multiple genes that influence Helicobacter pylori morphology

    Sycuro, L. K., Rule, C. S., Petersen, T. W., Wyckoff, T. J., Sessler, T., Nagarkar, D. B., Khalid, F., Pincus, Z., Biboy, J., Vollmer, W. & Salama, N. R., Nov 2013, In: Molecular Microbiology. 90, 4, p. 869-883 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    67 Scopus citations

  • Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

    Mitra, R., Li, X., Kapusta, A., Mayhew, D., Mitra, R. D., Feschotte, C. & Craig, N. L., Jan 2 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 1, p. 234-239 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    62 Scopus citations

  • Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

    Zhang, B., Zhou, Y., Lin, N., Lowdon, R. F., Hong, C., Nagarajan, R. P., Cheng, J. B., Li, D., Stevens, M., Lee, H. J., Xing, X., Zhou, J., Sundaram, V., Elliott, G., Gu, J., Shi, T., Gascard, P., Sigaroudinia, M., Tlsty, T. D. & Kadlecek, T. & 13 others, Weiss, A., O'Geen, H., Farnham, P. J., Maire, C. L., Ligon, K. L., Madden, P. A. F., Tam, A., Moore, R., Hirst, M., Marra, M. A., Zhang, B., Costello, J. F. & Wang, T., Sep 2013, In: Genome research. 23, 9, p. 1522-1540 19 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    146 Scopus citations

  • Gene Expression Analysis of Zebrafish Melanocytes, Iridophores, and Retinal Pigmented Epithelium Reveals Indicators of Biological Function and Developmental Origin

    Higdon, C. W., Mitra, R. D. & Johnson, S. L., Jul 9 2013, In: PloS one. 8, 7, e67801.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    83 Scopus citations

  • Genetic analysis of 16 NMR-lipoprotein fractions in humans, the GOLDN study

    Kraja, A. T., Borecki, I. B., Tsai, M. Y., Ordovas, J. M., Hopkins, P. N., Lai, C. Q., Frazier-Wood, A. C., Straka, R. J., Hixson, J. E., Province, M. A. & Arnett, D. K., Feb 2013, In: Lipids. 48, 2, p. 155-165 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    32 Scopus citations

  • Genetics of coronary artery calcification among African Americans, a meta-analysis

    Wojczynski, M. K., Li, M., Bielak, L. F., Kerr, K. F., Reiner, A. P., Wong, N. D., Yanek, L. R., Qu, L., White, C. C., Lange, L. A., Ferguson, J. F., He, J., Young, T., Mosley, T. H., Smith, J. A., Kral, B. G., Guo, X., Wong, Q., Ganesh, S. K. & Heckbert, S. R. & 25 others, Griswold, M. E., O'Leary, D. H., Budoff, M., Carr, J. J., Taylor, H. A., Bluemke, D. A., Demissie, S., Hwang, S. J., Paltoo, D. N., Polak, J. F., Psaty, B. M., Becker, D. M., Province, M. A., Post, W. S., O'Donnell, C. J., Wilson, J. G., Harris, T. B., Kavousi, M., Cupples, L. A., Rotter, J. I., Fornage, M., Becker, L. C., Peyser, P. A., Borecki, I. B. & Reilly, M. P., Jul 19 2013, In: BMC Medical Genetics. 14, 1, 75.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    64 Scopus citations

  • Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: The long life family study

    Lee, J. H., Cheng, R., Honig, L. S., Feitosa, M., Kammerer, C. M., Kang, M. S., Schupf, N., Lin, S. J., Sanders, J. L., Bae, H., Druley, T., Perls, T., Christensen, K., Province, M. & Mayeux, R., 2013, In: Frontiers in Genetics. 4, JAN, Article 310.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    57 Scopus citations

  • Genome-Wide Association of Body Fat Distribution in African Ancestry Populations Suggests New Loci

    Liu, C. T., Monda, K. L., Taylor, K. C., Lange, L., Demerath, E. W., Palmas, W., Wojczynski, M. K., Ellis, J. C., Vitolins, M. Z., Liu, S., Papanicolaou, G. J., Irvin, M. R., Xue, L., Griffin, P. J., Nalls, M. A., Adeyemo, A., Liu, J., Li, G., Ruiz-Narvaez, E. A. & Chen, W. M. & 73 others, Chen, F., Henderson, B. E., Millikan, R. C., Ambrosone, C. B., Strom, S. S., Guo, X., Andrews, J. S., Sun, Y. V., Mosley, T. H., Yanek, L. R., Shriner, D., Haritunians, T., Rotter, J. I., Speliotes, E. K., Smith, M., Rosenberg, L., Mychaleckyj, J., Nayak, U., Spruill, I., Garvey, W. T., Pettaway, C., Nyante, S., Bandera, E. V., Britton, A. F., Zonderman, A. B., Rasmussen-Torvik, L. J., Chen, Y. D. I., Ding, J., Lohman, K., Kritchevsky, S. B., Zhao, W., Peyser, P. A., Kardia, S. L. R., Kabagambe, E., Broeckel, U., Chen, G., Zhou, J., Wassertheil-Smoller, S., Neuhouser, M. L., Rampersaud, E., Psaty, B., Kooperberg, C., Manson, J. A. E., Kuller, L. H., Ochs-Balcom, H. M., Johnson, K. C., Sucheston, L., Ordovas, J. M., Palmer, J. R., Haiman, C. A., McKnight, B., Howard, B. V., Becker, D. M., Bielak, L. F., Liu, Y., Allison, M. A., Grant, S. F. A., Burke, G. L., Patel, S. R., Schreiner, P. J., Borecki, I. B., Evans, M. K., Taylor, H., Sale, M. M., Howard, V., Carlson, C. S., Rotimi, C. N., Cushman, M., Harris, T. B., Reiner, A. P., Cupples, L. A., North, K. E. & Fox, C. S., Aug 2013, In: PLoS genetics. 9, 8, e1003681.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    105 Scopus citations

  • Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections

    Zhuo, X., Rho, M. & Feschotte, C., 2013, In: Journal of virology. 87, 15, p. 8493-8501 9 p.

    Research output: Contribution to journal › Article › peer-review

    32 Scopus citations

  • Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture

    Berndt, S. I., Gustafsson, S., Mägi, R., Ganna, A., Wheeler, E., Feitosa, M. F., Justice, A. E., Monda, K. L., Croteau-Chonka, D. C., Day, F. R., Esko, T., Fall, T., Ferreira, T., Gentilini, D., Jackson, A. U., Luan, J., Randall, J. C., Vedantam, S., Willer, C. J. & Winkler, T. W. & 302 others, Wood, A. R., Workalemahu, T., Hu, Y. J., Lee, S. H., Liang, L., Lin, D. Y., Min, J. L., Neale, B. M., Thorleifsson, G., Yang, J., Albrecht, E., Amin, N., Bragg-Gresham, J. L., Cadby, G., Heijer, M. D., Eklund, N., Fischer, K., Goel, A., Hottenga, J. J., Huffman, J. E., Jarick, I., Johansson, Å., Johnson, T., Kanoni, S., Kleber, M. E., König, I. R., Kristiansson, K., Kutalik, Z., Lamina, C., Lecoeur, C., Li, G., Mangino, M., McArdle, W. L., Medina-Gomez, C., Müller-Nurasyid, M., Ngwa, J. S., Nolte, I. M., Paternoster, L., Pechlivanis, S., Perola, M., Peters, M. J., Preuss, M., Rose, L. M., Shi, J., Shungin, D., Smith, A. V., Strawbridge, R. J., Surakka, I., Teumer, A., Trip, M. D., Tyrer, J., Van Vliet-Ostaptchouk, J. V., Vandenput, L., Waite, L. L., Zhao, J. H., Absher, D., Asselbergs, F. W., Atalay, M., Attwood, A. P., Balmforth, A. J., Basart, H., Beilby, J., Bonnycastle, L. L., Brambilla, P., Bruinenberg, M., Campbell, H., Chasman, D. I., Chines, P. S., Collins, F. S., Connell, J. M., O Cookson, W., De Faire, U., De Vegt, F., Dei, M., Dimitriou, M., Edkins, S., Estrada, K., Evans, D. M., Farrall, M., Ferrario, M. M., Ferrières, J., Franke, L., Frau, F., Gejman, P. V., Grallert, H., Grönberg, H., Gudnason, V., Hall, A. S., Hall, P., Hartikainen, A. L., Hayward, C., Heard-Costa, N. L., Heath, A. C., Hebebrand, J., Homuth, G., Hu, F. B., Hunt, S. E., Hyppönen, E., Iribarren, C., Jacobs, K. B., Jansson, J. O., Jula, A., Kähönen, M., Kathiresan, S., Kee, F., Khaw, K. T., Kivimäki, M., Koenig, W., Kraja, A. T., Kumari, M., Kuulasmaa, K., Kuusisto, J., Laitinen, J. H., Lakka, T. A., Langenberg, C., Launer, L. J., Lind, L., Lindström, J., Liu, J., Liuzzi, A., Lokki, M. L., Lorentzon, M., Madden, P. A., Magnusson, P. K., Manunta, P., Marek, D., März, W., Leach, I. M., McKnight, B., Medland, S. E., Mihailov, E., Milani, L., Montgomery, G. W., Mooser, V., Mühleisen, T. W., Munroe, P. B., Musk, A. W., Narisu, N., Navis, G., Nicholson, G., Nohr, E. A., Ong, K. K., Oostra, B. A., Palmer, C. N., Palotie, A., Peden, J. F., Pedersen, N., Peters, A., Polasek, O., Pouta, A., Pramstaller, P. P., Prokopenko, I., Pütter, C., Radhakrishnan, A., Raitakari, O., Rendon, A., Rivadeneira, F., Rudan, I., Saaristo, T. E., Sambrook, J. G., Sanders, A. R., Sanna, S., Saramies, J., Schipf, S., Schreiber, S., Schunkert, H., Shin, S. Y., Signorini, S., Sinisalo, J., Skrobek, B., Soranzo, N., Stancáková, A., Stark, K., Stephens, J. C., Stirrups, K., Stolk, R. P., Stumvoll, M., Swift, A. J., Theodoraki, E. V., Thorand, B., Tregouet, D. A., Tremoli, E., Van Der Klauw, M. M., Van Meurs, J. B., Vermeulen, S. H., Viikari, J., Virtamo, J., Vitart, V., Waeber, G., Wang, Z., Widén, E., Wild, S. H., Willemsen, G., Winkelmann, B. R., Witteman, J. C., Wolffenbuttel, B. H., Wong, A., Wright, A. F., Zillikens, M. C., Amouyel, P., Boehm, B. O., Boerwinkle, E., Boomsma, D. I., Caulfield, M. J., Chanock, S. J., Cupples, L. A., Cusi, D., Dedoussis, G. V., Erdmann, J., Eriksson, J. G., Franks, P. W., Froguel, P., Gieger, C., Gyllensten, U., Hamsten, A., Harris, T. B., Hengstenberg, C., Hicks, A. A., Hingorani, A., Hinney, A., Hofman, A., Hovingh, K. G., Hveem, K., Illig, T., Jarvelin, M. R., Jöckel, K. H., Keinanen-Kiukaanniemi, S. M., Kiemeney, L. A., Kuh, D., Laakso, M., Lehtimäki, T., Levinson, D. F., Martin, N. G., Metspalu, A., Morris, A. D., Nieminen, M. S., Njølstad, I., Ohlsson, C., Oldehinkel, A. J., Ouwehand, W. H., Palmer, L. J., Penninx, B., Power, C., Province, M. A., Psaty, B. M., Qi, L., Rauramaa, R., Ridker, P. M., Ripatti, S., Salomaa, V., Samani, N. J., Snieder, H., Sørensen, T. I., Spector, T. D., Stefansson, K., Tönjes, A., Tuomilehto, J., Uitterlinden, A. G., Uusitupa, M., Van Der Harst, P., Vollenweider, P., Wallaschofski, H., Wareham, N. J., Watkins, H., Wichmann, H. E., Wilson, J. F., Abecasis, G. R., Assimes, T. L., Barroso, I., Boehnke, M., Borecki, I. B., Deloukas, P., Fox, C. S., Frayling, T., Groop, L. C., Haritunian, T., Heid, I. M., Hunter, D., Kaplan, R. C., Karpe, F., Moffatt, M. F., Mohlke, K. L., O'Connell, J. R., Pawitan, Y., Schadt, E. E., Schlessinger, D., Steinthorsdottir, V., Strachan, D. P., Thorsteinsdottir, U., Van Duijn, C. M., Visscher, P. M., Di Blasio, A. M., Hirschhorn, J. N., Lindgren, C. M., Morris, A. P., Meyre, D., Scherag, A., McCarthy, M. I., Speliotes, E. K., North, K. E., Loos, R. J. & Ingelsson, E., May 2013, In: Nature Genetics. 45, 5, p. 501-512 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    485 Scopus citations

  • Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake

    Tanaka, T., Ngwa, J. S., Van Rooij, F. J. A., Zillikens, M. C., Wojczynski, M. K., Frazier-Wood, A. C., Houston, D. K., Kanoni, S., Lemaitre, R. N., Luan, J. N. A., Mikkilä, V., Renstrom, F., Sonestedt, E., Zhao, J. H., Chu, A. Y., Qi, L., Chasman, D. I., De Oliveira Otto, M. C., Dhurandhar, E. J. & Feitosa, M. F. & 46 others, Johansson, I., Khaw, K. T., Lohman, K. K., Manichaikul, A., McKeown, N. M., Mozaffarian, D., Singleton, A., Stirrups, K., Viikari, J., Ye, Z., Bandinelli, S., Barroso, I., Deloukas, P., Forouhi, N. G., Hofman, A., Liu, Y., Lyytikäinen, L. P., North, K. E., Dimitriou, M., Hallmans, G., Kähönen, M., Langenberg, C., Ordovas, J. M., Uitterlinden, A. G., Hu, F. B., Kalafati, I. P., Raitakari, O., Franco, O. H., Johnson, A., Emilsson, V., Schrack, J. A., Semba, R. D., Siscovick, D. S., Arnett, D. K., Borecki, I. B., Franks, P. W., Kritchevsky, S. B., Loos, T. L. R. J. F., Orho-Melander, M., Rotter, J. I., Wareham, N. J., Witteman, J. C. M., Ferrucci, L., Dedoussis, G., Cupples, L. A. & Nettleton, J. A., Jun 1 2013, In: American Journal of Clinical Nutrition. 97, 6, p. 1395-1402 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    186 Scopus citations

  • Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants

    Enuameh, M. S., Asriyan, Y., Richards, A., Christensen, R. G., Hall, V. L., Kazemian, M., Zhu, C., Pham, H., Cheng, Q., Blatti, C., Brasefield, J. A., Basciotta, M. D., Ou, J., McNulty, J. C., Zhu, L. J., Celniker, S. E., Sinha, S., Stormo, G. D., Brodsky, M. H. & Wolfe, S. A., Jun 2013, In: Genome research. 23, 6, p. 928-940 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    62 Scopus citations

  • GWAS of cerebrospinal fluid tau levels identifies risk variants for alzheimer's disease

    Cruchaga, C., Kauwe, J. S. K., Harari, O., Jin, S. C., Cai, Y., Karch, C. M., Benitez, B. A., Jeng, A. T., Skorupa, T., Carrell, D., Bertelsen, S., Bailey, M., McKean, D., Shulman, J. M., De Jager, P. L., Chibnik, L., Bennett, D. A., Arnold, S. E., Harold, D. & Sims, R. & 17 others, Gerrish, A., Williams, J., Van Deerlin, V. M., Lee, V. M. Y., Shaw, L. M., Trojanowski, J. Q., Haines, J. L., Mayeux, R., Pericak-Vance, M. A., Farrer, L. A., Schellenberg, G. D., Peskind, E. R., Galasko, D., Fagan, A. M., Holtzman, D. M., Morris, J. C. & Goate, A. M., Apr 24 2013, In: Neuron. 78, 2, p. 256-268 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    298 Scopus citations