Department of Biology

2023

Detecting change points in neural population activity with contrastive metric learning

Urzay, C., Ahad, N., Azabou, M., Schneider, A., Atamkuri, G., Hengen, K. B. & Dyer, E. L., 2023, 11th International IEEE/EMBS Conference on Neural Engineering, NER 2023 - Proceedings. IEEE Computer Society, (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2023-April).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2022

A GLASS MICROFLUIDIC BIOELECTROCHEMICAL CELL PLATFORM FOR THE STUDY OF MICROBIAL EXTRACELLULAR ELECTRON UPTAKE

Stoica, A., Rengasamy, K., Ranaivoarisoa, T. O., Bose, A. & Meacham, J. M., 2022, MicroTAS 2022 - 26th International Conference on Miniaturized Systems for Chemistry and Life Sciences. Chemical and Biological Microsystems Society, p. 1179-1180 2 p. (MicroTAS 2022 - 26th International Conference on Miniaturized Systems for Chemistry and Life Sciences).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2021

Drop, Swap, and Generate: A Self-Supervised Approach for Generating Neural Activity

Liu, R., Azabou, M., Dabagia, M., Lin, C. H., Azar, M. G., Hengen, K. B., Valko, M. & Dyer, E. L., 2021, Advances in Neural Information Processing Systems 34 - 35th Conference on Neural Information Processing Systems, NeurIPS 2021. Ranzato, M., Beygelzimer, A., Dauphin, Y., Liang, P. S. & Wortman Vaughan, J. (eds.). Neural information processing systems foundation, p. 10587-10599 13 p. (Advances in Neural Information Processing Systems; vol. 13).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

21 Scopus citations

2018

Segmenting root systems in x-ray computed tomography images using level sets

Tabb, A., Duncan, K. E. & Topp, C. N., May 3 2018, Proceedings - 2018 IEEE Winter Conference on Applications of Computer Vision, WACV 2018. Institute of Electrical and Electronics Engineers Inc., p. 586-595 10 p. (Proceedings - 2018 IEEE Winter Conference on Applications of Computer Vision, WACV 2018; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

9 Scopus citations

Using a Network Approach to Identify Genes Important during Anther Development

Tamim, S. & Meyers, B., Aug 15 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 530 1 p. (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2016

A hierarchy of modeling frameworks for cyanobacterial metabolism: From gsms to ME models

Mueller, T., Gopalakrishnan, S., Simons, M., Pakrasi, H. B. & Maranas, C. D., 2016, Metabolic Engineering 11. AIChE, p. 549-550 2 p. (Metabolic Engineering 11).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

To Have and to Hold: Selection for Seed and Fruit Retention During Crop Domestication

Li, L. F. & Olsen, K. M., 2016, Genes and Evolution, 2016. Orgogozo, V. (ed.). Academic Press Inc., p. 63-109 47 p. (Current Topics in Developmental Biology; vol. 119).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

56 Scopus citations

ViTBAT: Video tracking and behavior annotation tool

Biresaw, T. A., Nawaz, T., Ferryman, J. & Dell, A. I., Nov 7 2016, 2016 13th IEEE International Conference on Advanced Video and Signal Based Surveillance, AVSS 2016. Institute of Electrical and Electronics Engineers Inc., p. 295-301 7 p. 7738055. (2016 13th IEEE International Conference on Advanced Video and Signal Based Surveillance, AVSS 2016).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

48 Scopus citations

2014

¹³C-metabolic flux analysis of cyanobacterial photo-fermentation

You, L., He, L., Berla, B., Pakrasi, H. B. & Tang, Y. J., 2014, International Congress on Energy 2014, ICE 2014 - Topical Conference at the 2014 AIChE Annual Meeting. AIChE, p. 1972-1973 2 p. (International Congress on Energy 2014, ICE 2014 - Topical Conference at the 2014 AIChE Annual Meeting; vol. 3).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

¹³C-Metabolic flux analysis of cyanobacterial photo-fermentation

You, L., He, L., Berla, B., Pakrasi, H. B. & Tang, Y. J., 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, p. 1205-1206 2 p. (Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2013

Imaging corn plants with PhytoPET, a modular PET system for plant biology

Lee, S., Kross, B., McKisson, J., McKisson, J. E., Weisenberger, A. G., Xi, W., Zorn, C., Bonito, G., Howell, C. R., Reid, C. D., Crowell, A., Cumberbatch, L. C., Topp, C. & Smith, M. F., 2013, 2013 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2013. Institute of Electrical and Electronics Engineers Inc., 6829796. (IEEE Nuclear Science Symposium Conference Record).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

6 Scopus citations

The small RNome of clostridium acetobutylicum that responds to butanol and butyrate stress

Venkataramanan, K. P., Jones, S., McCormick, K. P., Kunjeti, S. G., Ralston, M., Meyers, B. C. & Papoutsakis, E. T., 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 267 1 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2010

Alternation of agonists and antagonists during turtle hindlimb motor rhythms

Stein, P. S. G., Jun 2010, Neurons and Networks in the Spinal Cord. Blackwell Publishing Inc., p. 105-118 14 p. (Annals of the New York Academy of Sciences; vol. 1198).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

21 Scopus citations

2009

Bayesian network approach to understand regulation of biological processes in cyanobacteria

Elvitigala, T. R., Singh, A. K., Pakrasi, H. B. & Ghosh, B. K., 2009, Proceedings of the 48th IEEE Conference on Decision and Control held jointly with 2009 28th Chinese Control Conference, CDC/CCC 2009. Institute of Electrical and Electronics Engineers Inc., p. 3739-3744 6 p. 5399570. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Dynamic network modeling of diurnal genes in cyanobacteria

Elvitigala, T., Pakrasi, H. B. & Ghosh, B. K., 2009, Emergent Problems in Nonlinear Systems and Control. Thoma, M., Allgower, F. & Morari, M. (eds.). p. 21-41 21 p. (Lecture Notes in Control and Information Sciences; vol. 393).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Modeling and simulation of diurnal biological processes in cyanobacteria

Elvitigala, T. R., Pakrasi, H. B. & Ghosh, B. K., 2009, 2009 American Control Conference, ACC 2009. p. 343-348 6 p. 5159968. (Proceedings of the American Control Conference).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

2008

Controlling diurnal rhythms by light

Ghosh, B. K., Pakrasi, H. B. & Elvitigala, T. R., 2008, 2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008. p. 1367-1372 6 p. 4795722. (2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Managing biological data using bdbms

Eltabakh, M. Y., Ouzzani, M., Aref, W. G., Elmagarmid, A. K., Laura-Silva, Y., Arshad, M. U., Salt, D. & Baxter, I., 2008, Proceedings of the 2008 IEEE 24th International Conference on Data Engineering, ICDE'08. p. 1600-1603 4 p. 4497631. (Proceedings - International Conference on Data Engineering).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

18 Scopus citations

Modeling diurnal rhythms with an array of phase dynamic oscillators

Wang, W., Pakrasi, H. B. & Ghosh, B. K., 2008, 2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008. p. 1391-1396 6 p. 4795726. (2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Small world network models of intercellular coupling in the mammalian circadian clock

Vasalou, C., Freeman, M., Herzog, E. D. & Henson, M. A., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2005

Differential gene expression in Papaver-species in comparison with alkaloid profiles

Ziegler, J. & Kutchan, T. M., 2005, III WOCMAP Congress on Medicinal and Aromatic Plants - Volume 1: Bioprospecting and Ethnopharmacology. International Society for Horticultural Science, p. 173-178 6 p. (Acta Horticulturae; vol. 675).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Molecular genetic analysis of an O-methyltransferase of the opium poppy Papaver somniferum

Ounaroon, A., Frick, S. & Kutchan, T. M., 2005, III WOCMAP Congress on Medicinal and Aromatic Plants - Volume 1: Bioprospecting and Ethnopharmacology. International Society for Horticultural Science, p. 167-171 5 p. (Acta Horticulturae; vol. 675).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Studying morphine biosynthesis using transgenic opium poppy (Papaver somniferum L.)

Frick, S., Kramell, R., Kutchan, T. M. & Larkin, P. J., 2005, III WOCMAP Congress on Medicinal and Aromatic Plants - Volume 6: Traditional edicine and Nutraceuticals. International Society for Horticultural Science, p. 37-43 7 p. (Acta Horticulturae; vol. 680).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

1990

Characterization of an osteoclast membrane protein related to superoxide dismutase

Oursler, M. J. & Osdoby, P., 1990, Calcium regulation and bone metabolism. Basic and clinical aspects: proceedings of the 10th International Conference on calcium regulating hormones and bone metabolism. ICS886. Cohn, D. V., Glorieux, F. H., Martin, T. J., Cohn, D. V., Glorieux, F. H. & Martin, T. J. (eds.). Elsevier Science Publishers B.V., p. 214-220 7 p. (Calcium regulation and bone metabolism. Basic and clinical aspects: proceedings of the 10th International Conference on calcium regulating hormones and bone metabolism. ICS886).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Department of Biology

Research output

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