Research output per year
Research output per year
- 1 - 50 out of 78 results
Search results
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2024
The MitoLuc assay for the analysis of the mechanism of mitochondrial protein import
Needs, H. I., Yan, Y., Niemi, N. M. & Collinson, I., Jan 2024, Mitochondrial Translocases Part A. Academic Press Inc., p. 407-436 30 p. (Methods in Enzymology; vol. 706).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2023
An Introduction to the Stickers-and-Spacers Framework as Applied to Biomolecular Condensates
Ginell, G. M. & Holehouse, A. S., 2023, Methods in Molecular Biology. Humana Press Inc., p. 95-116 22 p. (Methods in Molecular Biology; vol. 2563).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
26 Scopus citations -
Fluorescence Correlation Spectroscopy and Phase Separation
Incicco, J. J., Roy, D., Stuchell-Brereton, M. D. & Soranno, A., 2023, Methods in Molecular Biology. Humana Press Inc., p. 161-198 38 p. (Methods in Molecular Biology; vol. 2563).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2022
Advances in X-ray crystallography methods to study structural dynamics of macromolecules
Kermani, A. A., Aggarwal, S. & Ghanbarpour, A., Jan 1 2022, Advanced Spectroscopic Methods to Study Biomolecular Structure and Dynamics. Elsevier, p. 309-355 47 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
12 Scopus citations -
Fluorescence Correlation Spectroscopy: A Tool for Measuring Dynamic and Equilibrium Properties of Molecules in Cells
Elson, E. L., Jan 1 2022, Encyclopedia of Cell Biology: Volume 1-6, Second Edition. Elsevier, Vol. 2. p. 122-132 11 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Light and Electron Microscopy: Introductory Survey
L Elson, E., Jan 1 2022, Encyclopedia of Cell Biology: Volume 1-6, Second Edition. Elsevier, Vol. 2. p. 1-3 3 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2021
Replication: Nonhexameric SF1 DNA helicases/translocases
Antony, E., Lohman, T. M. & Zaher, H., Jul 29 2021, Encyclopedia of Biological Chemistry: Third Edition. Elsevier, Vol. 4. p. 98-103 6 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Using BioID to Characterize the RAS Interactome
Adhikari, H. & Counter, C. M., 2021, Methods in Molecular Biology. Humana Press Inc., p. 271-280 10 p. (Methods in Molecular Biology; vol. 2262).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
2020
Analyzing the sequences of intrinsically disordered regions with CIDER and localCIDER
Ginell, G. M. & Holehouse, A. S., 2020, Methods in Molecular Biology. Humana Press Inc., p. 103-126 24 p. (Methods in Molecular Biology; vol. 2141).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
10 Scopus citations -
Structure of a synaptic γδ resolvase tetramer covalently linked to two cleaved DNAS
Li, W., Kamtekar, S., Xiong, Y., Sarkis, G. J., Grindley, N. D. F. & Steitz, T. A., Jan 1 2020, Structural Insights into Gene Expression and Protein Synthesis. World Scientific Publishing Co., p. 447-452 6 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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The long journey to understanding the structural mechanism of serine recombinases
Li, W., Jan 1 2020, Structural Insights into Gene Expression and Protein Synthesis. World Scientific Publishing Co., p. 229-234 6 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2019
IDPs and IDRs in biomolecular condensates
Holehouse, A. S., Jan 1 2019, Intrinsically Disordered Proteins: Dynamics, Binding, and Function. Elsevier, p. 209-255 47 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
14 Scopus citations -
Integrated analysis of acetyl-CoA and histone modification via mass spectrometry to investigate metabolically driven acetylation
Sidoli, S., Trefely, S., Garcia, B. A. & Carrer, A., 2019, Methods in Molecular Biology. Humana Press Inc., p. 125-147 23 p. (Methods in Molecular Biology; vol. 1928).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
29 Scopus citations -
Isotopic labeling and quantitative proteomics of acetylation on histones and beyond
Lund, P. J., Kori, Y., Zhao, X., Sidoli, S., Yuan, Z. F. & Garcia, B. A., 2019, Methods in Molecular Biology. Humana Press Inc., p. 43-70 28 p. (Methods in Molecular Biology; vol. 1977).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
12 Scopus citations -
Patch-clamp analysis of the mitochondrial calcium uniporter
Garg, V. & Kirichok, Y. Y., 2019, Methods in Molecular Biology. Humana Press Inc., p. 75-86 12 p. (Methods in Molecular Biology; vol. 1925).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
12 Scopus citations -
Quantitative analysis of global protein lysine methylation by mass spectrometry
Lund, P. J., Lehman, S. M. & Garcia, B. A., 2019, Post-translational Modifications That Modulate Enzyme Activity. Garcia, B. A. (ed.). Academic Press Inc., p. 475-498 24 p. (Methods in Enzymology; vol. 626).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
11 Scopus citations -
The mechanism FA-dependent H+ transport by UCP1
Bertholet, A. M. & Kirichok, Y., 2019, Handbook of Experimental Pharmacology. Springer New York LLC, p. 143-159 17 p. (Handbook of Experimental Pharmacology; vol. 251).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
16 Scopus citations -
2018
Phase Separation of Intrinsically Disordered Proteins
Posey, A. E., Holehouse, A. S. & Pappu, R. V., 2018, Intrinsically Disordered Proteins. Rhoades, E. (ed.). Academic Press Inc., p. 1-30 30 p. (Methods in Enzymology; vol. 611).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
137 Scopus citations -
2017
Characterization of individual histone posttranslational modifications and their combinatorial patterns by mass spectrometry-based proteomics strategies
Sidoli, S. & Garcia, B. A., 2017, Methods in Molecular Biology. Humana Press Inc., p. 121-148 28 p. (Methods in Molecular Biology; vol. 1528).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
37 Scopus citations -
Measuring the kinetic and mechanical properties of non-processive myosins using optical tweezers
Greenberg, M. J., Shuman, H. & Ostap, E. M., 2017, Methods in Molecular Biology. Humana Press Inc., p. 483-509 27 p. (Methods in Molecular Biology; vol. 1486).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access16 Scopus citations -
Mechanism of lagging-strand DNA replication in eukaryotes
Stodola, J. L. & Burgers, P. M., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 117-133 17 p. (Advances in Experimental Medicine and Biology; vol. 1042).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
45 Scopus citations -
Methods for Structural and Functional Analyses of Intramembrane Prenyltransferases in the UbiA Superfamily
Yang, Y., Ke, N., Liu, S. & Li, W., 2017, Methods in Enzymology. Academic Press Inc., p. 309-347 39 p. (Methods in Enzymology; vol. 584).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access10 Scopus citations -
Recent Achievements in Characterizing the Histone Code and Approaches to Integrating Epigenomics and Systems Biology
Janssen, K. A., Sidoli, S. & Garcia, B. A., 2017, Methods in Enzymology. Academic Press Inc., p. 359-378 20 p. (Methods in Enzymology; vol. 586).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access41 Scopus citations -
2016
Fluorescence Correlation Spectroscopy: A Tool for Measuring Dynamic and Equilibrium Properties of Molecules in Cells
Elson, E. L., Jan 1 2016, Organizational Cell Biology. Elsevier Inc., Vol. 2. p. 99-106 8 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Fluorescence imaging of inflammation in live animals
Zhou, M., Cao, J. & Akers, W. J., 2016, Methods in Molecular Biology. Humana Press Inc., p. 45-54 10 p. (Methods in Molecular Biology; vol. 1444).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
How to Run FAST Simulations
Zimmerman, M. I. & Bowman, G. R., 2016, Methods in Enzymology. Academic Press Inc., p. 213-225 13 p. (Methods in Enzymology; vol. 578).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
Identification and Quantification of Histone PTMs Using High-Resolution Mass Spectrometry
Karch, K. R., Sidoli, S. & Garcia, B. A., 2016, Enzymes of Epigenetics, Part B. Marmorstein, R. (ed.). Academic Press Inc., p. 3-29 27 p. (Methods in Enzymology; vol. 574).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
36 Scopus citations -
In vivo fluorescence reflectance imaging with subcutaneous mouse tumor models
Cao, J. & Zhou, M., 2016, Methods in Molecular Biology. Humana Press Inc., p. 27-35 9 p. (Methods in Molecular Biology; vol. 1444).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
Measuring Membrane Protein Dimerization Equilibrium in Lipid Bilayers by Single-Molecule Fluorescence Microscopy
Chadda, R. & Robertson, J. L., 2016, Methods in Enzymology. Academic Press Inc., p. 53-82 30 p. (Methods in Enzymology; vol. 581).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
17 Scopus citations -
Organizational Cell Biology: An Overview
Elson, E. L., Raposo, G., Gleeson, P. A., Akhmanova, A., Yoshimori, T., Stahl, P. D. & Goud, B., Jan 1 2016, Organizational Cell Biology. Elsevier Inc., Vol. 2. p. 1-4 4 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
2015
2-aminopurine fluorescence as a probe of local RNA structure and dynamics and global folding
Rau, M. J. & Hall, K. B., 2015, Methods in Enzymology. 1 ed. Academic Press Inc., p. 99-124 26 p. (Methods in Enzymology; vol. 558, no. 1).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
Application of Mass Spectrometry in Translational Epigenetics
Wang, X., Sidoli, S. & Garcia, B. A., Jun 17 2015, Epigenetic Technological Applications. Elsevier Inc., p. 55-78 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2014
An overview and practical guide to building markov state models
Bowman, G. R., 2014, An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Springer New York LLC, p. 7-22 16 p. (Advances in Experimental Medicine and Biology; vol. 797).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
23 Scopus citations -
A tutorial on building markov state models with msmbuilder and coarse-graining them with BACE
Bowman, G. R., 2014, Protein Dynamics: Methods and Protocols. Humana Press Inc., p. 141-158 18 p. (Methods in Molecular Biology; vol. 1084).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
11 Scopus citations -
Beta1,4-NAcetylgalactosaminyltransferase-3(B4GALNT3) and beta1,4-NAcetylgalactosaminyltransferase-4 (B4GALNT4)
Baenziger, J. U., Jan 1 2014, Handbook of Glycosyltransferases and Related Genes, Second Edition. Springer Japan, Vol. 1. p. 429-437 9 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Integrated modeling and imaging for quantifying the mechanics of cells in three-dimensional culture
Genin, G. M. & Elson, E. L., Jan 1 2014, Handbook of Imaging in Biological Mechanics. CRC Press, p. 275-288 14 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Magnetic tweezers force spectroscopy
Galburt, E. A., Jan 1 2014, Handbook of Imaging in Biological Mechanics. CRC Press, p. 481-489 9 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
Mechanics of cell-seeded ECM scaffolds
Genin, G. M. & Elson, E. L., Jan 1 2014, Cell and Matrix Mechanics. CRC Press, p. 173-196 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
5 Scopus citations -
Monitoring notch activation in cultured mammalian cells: Luciferase complementation imaging assays
Ilagan, M. X. G. & Kopan, R., 2014, Notch Signaling: Methods and Protocols. Humana Press Inc., p. 155-168 14 p. (Methods in Molecular Biology; vol. 1187).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
5 Scopus citations -
Monitoring notch activation in cultured mammalian cells: Transcriptional reporter assays
Ilagan, M. X. G. & Kopan, R., 2014, Notch Signaling: Methods and Protocols. Humana Press Inc., p. 143-154 12 p. (Methods in Molecular Biology; vol. 1187).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
N-Acetylgalactosamine-4-sulfotransferase-1 (GalNAc-4-ST1, CHST8) and N-Acetylgalactosamine-4-sulfotransferase-2 (GalNAc-4-ST2, CHST9)
Baenziger, J. U., Jan 1 2014, Handbook of Glycosyltransferases and Related Genes, Second Edition. Springer Japan, Vol. 2. p. 1149-1155 7 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Optical microscopy methods for measuring structure and dynamic processes of cells and tissues
Elson, E. L., Jan 1 2014, Handbook of Imaging in Biological Mechanics. CRC Press, p. 507-517 11 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Proteomic interrogation of human chromatin protein states
Bhanu, N. V. & Garcia, B. A., Nov 1 2014, Systems Analysis of Chromatin-Related Protein Complexes in Cancer. Springer New York, Vol. 9781461479314. p. 149-175 27 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Software for building markov state models
Bowman, G. R. & Noé, F., 2014, An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Springer New York LLC, 1 p. (Advances in Experimental Medicine and Biology; vol. 797).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
2013
40 Years of FCS: How it all began
Elson, E. L., 2013, Fluorescence Fluctuation Spectroscopy (FFS), Part A. Academic Press Inc., p. 1-10 10 p. (Methods in Enzymology; vol. 518).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
25 Scopus citations -
Brief introduction to fluorescence correlation spectroscopy
Elson, E. L., 2013, Fluorescence Fluctuation Spectroscopy (FFS), Part A. Academic Press Inc., p. 11-41 31 p. (Methods in Enzymology; vol. 518).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
39 Scopus citations -
Eukaryotic DNA Polymerase δ
Burgers, P. M. J., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 245-248 4 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Heavy methyl-SILAC labeling coupled with liquid chromatography and high-resolution mass spectrometry to study the dynamics of site-specific histone methylation
Cao, X. J., Zee, B. M. & Garcia, B. A., 2013, Gene Regulation: Methods and Protocols. Humana Press Inc., p. 299-313 15 p. (Methods in Molecular Biology; vol. 977).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
7 Scopus citations -
Nonhexameric SF1 DNA Helicases/Translocases
Antony, E. & Lohman, T. M., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 261-265 5 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Sperm patch-clamp
Lishko, P., Clapham, D. E., Navarro, B. & Kirichok, Y., 2013, Cilia, Part B. Academic Press Inc., p. 59-83 25 p. (Methods in Enzymology; vol. 525).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access28 Scopus citations