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  • 2011

    Impact of monochloramine disinfection on the development of groundwater-fed biofilms

    Ling, F. & Liu, W. T., 2011, Water Quality Technology Conference and Exposition 2011. p. 1295 1 p. (Water Quality Technology Conference and Exposition 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Kinematics and kinetics of flagellar locomotion in chlamydomonas reinhardtii

    Bayly, P. V., Lewis, B. L., Ranz, E. C., Okamoto, R. J., Pless, R. B. & Dutcher, S. K., 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 1249-1250 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • On the mechanics of partially mineralized tissues and their implications for the attachment of tendon to bone

    Liu, Y., Birman, V., Chen, C., Thomopoulos, S. & Genin, G. M., 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 55-56 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Tailoring the gross morphology of the tendon-to-bone insertion for the reduction of stress concentrations

    Liu, Y., Birman, V., Chen, C., Thomopoulos, S. & Genin, G. M., 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 1017-1018 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2010

    A novel transition based encoding scheme for planning as satisfiability

    Huang, R., Chen, Y. & Zhang, W., 2010, AAAI-10 / IAAI-10 - Proceedings of the 24th AAAI Conference on Artificial Intelligence and the 22nd Innovative Applications of Artificial Intelligence Conference. AI Access Foundation, p. 89-94 6 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    39 Scopus citations
  • A SAT based effective algorithm for the directed Hamiltonian cycle problem

    Jäger, G. & Zhang, W., 2010, Computer Science - Theory and Applications - 5th International Computer Science Symposium in Russia, CSR 2010, Proceedings. p. 216-227 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6072 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Bi-Material attachment through a soft tissue interfacial system

    Liu, Y. X., Thomopoulos, S., Birman, V., Li, J. S. & Genin, G. M., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 865-866 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Comparison of different nucleic acids extraction methods for the molecular analysis of drinking water biofilms

    Hwang, C., Ling, F., Andersen, G., LeChevallier, M. & Liu, W. T., 2010, Water Quality Technology Conference and Exposition 2010. p. 521-522 2 p. (Water Quality Technology Conference and Exposition 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Detecting coevolution of functionally related proteins for automated protein annotation

    Kwan, A. L., Dutcher, S. K. & Stormo, G. D., 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 99-105 7 p. 5521705. (10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    3 Scopus citations
  • Functional grading of plga nanofiber scaffolds for tendon-to-bone insertion tissue engineering

    Lipner, J., Li, X., Liu, Y. X., Mangano, M., Xie, J., Genin, G. M., Xia, Y. & Thomopoulos, S., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 383-384 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Measurement of brain biomechanics in vivo by magnetic resonance imaging

    Bayly, P. V., Clayton, E. H., Feng, Y., Abney, T., Namani, R., Okamoto, R. J. & Genin, G. M., 2010, Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010. p. 664-675 12 p. (Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Mechanzically-induced cytoskeletal remodeling in 3D cultures of contractile fibroblasts

    Lee, S. L., Pryse, K. M., Butler, B., Elson, E. L. & Genin, G. M., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 201-202 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Principal components of brain deformation in response to skull acceleration: The roles of sliding and tethering between the brain and skull

    Abney, T. M., Feng, Y. A., Pless, R., Okamoto, R. J., Genin, G. M. & Bayly, P. V., 2010, 26th Southern Biomedical Engineering Conference SBEC 2010. p. 9-12 4 p. (IFMBE Proceedings; vol. 32 IFMBE).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Probing cytoskeletal mechanics using biochemical inhibitors

    Pryse, K. M., Abney, T. M., Genin, G. M. & Elson, E. L., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 357-358 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Promoter prediction based on a multiple instance learning scheme

    Zhou, X., Ruan, J. & Zhang, W., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 295-301 7 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • SplittingHeirs: Inferring haplotypes by optimizing resultant dense graphs

    Climer, S., Templeton, A. R. & Zhang, W., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 127-136 10 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • The dominant mechanical interaction between the brain and skull in vivo is sliding arrested at key points of brain-skull tethering

    Abney, T. M., Feng, Y. A., Pless, R., Okamoto, R. J., Genin, G. M. & Bayly, P. V., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 907-908 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Wave propagation in the human brain and skull imaged in vivo by MR elastography

    Clayton, E. H., Genin, G. M. & Bayly, P. V., 2010, 26th Southern Biomedical Engineering Conference SBEC 2010. p. 31-33 3 p. (IFMBE Proceedings; vol. 32 IFMBE).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • 2009

    Active and passive responses of myofibroblasts in response to mechanical stretching in 3D culture

    Nathan, A. C., Lee, S. L., Marquez, J. P., Ju, T., Pryse, K. M., Elson, E. L. & Genin, G. M., 2009, Proceedings of the ASME Summer Bioengineering Conference, SBC2008. PART B ed. p. 649-650 2 p. (Proceedings of the ASME Summer Bioengineering Conference, SBC2008; no. PART B).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • An optimal temporally expressive planner: Initial results and application to P2P network optimization

    Huang, R., Chen, Y. & Zhang, W., 2009, ICAPS 2009 - Proceedings of the 19th International Conference on Automated Planning and Scheduling. p. 178-185 8 p. (ICAPS 2009 - Proceedings of the 19th International Conference on Automated Planning and Scheduling).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    21 Scopus citations
  • Bayesian network approach to understand regulation of biological processes in cyanobacteria

    Elvitigala, T. R., Singh, A. K., Pakrasi, H. B. & Ghosh, B. K., 2009, Proceedings of the 48th IEEE Conference on Decision and Control held jointly with 2009 28th Chinese Control Conference, CDC/CCC 2009. Institute of Electrical and Electronics Engineers Inc., p. 3739-3744 6 p. 5399570. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Bridging the gap between academia and industry - Washington university's process control laboratories

    Tang, Y. J. & Heider, R., 2009, 2009 American Control Conference, ACC 2009. p. 2730-2734 5 p. 5160506. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Complete parsimony haplotype inference problem and algorithms

    Jäger, G., Climer, S. & Zhang, W., 2009, Algorithms - ESA 2009 - 17th Annual European Symposium, Proceedings. p. 337-348 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5757 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    4 Scopus citations
  • Dynamic network modeling of diurnal genes in cyanobacteria

    Elvitigala, T., Pakrasi, H. B. & Ghosh, B. K., 2009, Emergent Problems in Nonlinear Systems and Control. Thoma, M., Allgower, F. & Morari, M. (eds.). p. 21-41 21 p. (Lecture Notes in Control and Information Sciences; vol. 393).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Modeling and simulation of diurnal biological processes in cyanobacteria

    Elvitigala, T. R., Pakrasi, H. B. & Ghosh, B. K., 2009, 2009 American Control Conference, ACC 2009. p. 343-348 6 p. 5159968. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Ontologies for cancer nanotechnology research

    Thomas, D. G., Pappu, R. V. & Baker, N. A., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 4158-4161 4 p. 5333941. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    7 Scopus citations
  • The nano-physiology of mineralized tissues

    Alexander, B. E., Daulton, T. L., Genin, G. M., Pasteris, J. D., Wopenka, B. & Thomopoulos, S., 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART A ed. p. 55-56 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART A).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • 2008

    Controlling diurnal rhythms by light

    Ghosh, B. K., Pakrasi, H. B. & Elvitigala, T. R., 2008, 2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008. p. 1367-1372 6 p. 4795722. (2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Fast planning by search in domain transition graph

    Chen, Y., Huang, R. & Zhang, W., 2008, AAAI-08/IAAI-08 Proceedings - 23rd AAAI Conference on Artificial Intelligence and the 20th Innovative Applications of Artificial Intelligence Conference. p. 886-891 6 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Managing biological data using bdbms

    Eltabakh, M. Y., Ouzzani, M., Aref, W. G., Elmagarmid, A. K., Laura-Silva, Y., Arshad, M. U., Salt, D. & Baxter, I., 2008, Proceedings of the 2008 IEEE 24th International Conference on Data Engineering, ICDE'08. p. 1600-1603 4 p. 4497631. (Proceedings - International Conference on Data Engineering).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    18 Scopus citations
  • Modeling diurnal rhythms with an array of phase dynamic oscillators

    Wang, W., Pakrasi, H. B. & Ghosh, B. K., 2008, 2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008. p. 1391-1396 6 p. 4795726. (2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Modeling the tendon-bone insertion: A functionally graded material

    Thomopoulos, S., Kent, A., Wopenka, B., Pasteris, J., Birman, V. & Genin, G., 2008, 8th World Biomaterials Congress 2008. p. 380 1 p. (8th World Biomaterials Congress 2008; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Transient shear wave propagation in a viscoelastic gel cylinder: Comparison of theoryto MRI-based measurements

    Sabet, A., Genin, G. M., Zatlin, B., Christoforou, E. & Bayly, P. V., 2008, 2007 Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, DETC2007. p. 649-652 4 p. (2007 Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, DETC2007; vol. 1 PART A).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2007

    An efficient spectral algorithm for network community discovery and its applications to biological and social networks

    Ruan, J. & Zhang, W., 2007, Proceedings of the 7th IEEE International Conference on Data Mining, ICDM 2007. Institute of Electrical and Electronics Engineers Inc., p. 643-648 6 p. 4470304. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    106 Scopus citations
  • Build a dictionary, learn a grammar, decipher stegoscripts, and discover genomic regulatory elements

    Wang, G. & Zhang, W., 2007, Systems Biology and Regulatory Genomics - Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, Revised Selected Papers. p. 80-94 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4023 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Computational characterization and identification of core promoters of MicroRNA genes in C. elegans, H. sapiens and A. thaliana

    Zhou, X., Ruan, J., Wang, G. & Zhang, W., 2007, Systems Biology and Regulatory Genomics - Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, Revised Selected Papers. p. 235-248 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4023 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Deformation of the human brain induced by mild angular acceleration

    Sabet, A. A., Christoforou, E., Zatlin, B., Genin, G. M. & Bayly, P. V., 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. American Society of Mechanical Engineers (ASME), p. 863-864 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Gene expression profiling and machine learning to understand and predict primary graft dysfunction

    Ray, M., Dharmarajan, S., Freudenberg, J., Patterson, G. A. & Zhang, W., 2007, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. p. 1076-1080 5 p. 4375692. (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Identification and evaluation of functional modules in gene co-expression networks

    Ruan, J. & Zhang, W., 2007, Systems Biology and Computational Proteomics - Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, Revised Selected Papers. Springer Verlag, p. 57-76 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4532 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
    16 Scopus citations
  • Mineral composition at the tendon-to-bone insertion and its role in stress transfer

    Thomopoulos, S., Kent, A., Birman, V., Das, R., Wopenka, B., Pastoris, J. & Genin, G., 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. American Society of Mechanical Engineers (ASME), p. 919-920 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Validation of an MRI-based method for measuring the deformation of the brain during angular acceleration

    Sabet, A. A., Christoforou, E., Zatlin, B., Genin, G. M. & Bayly, P. V., 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. American Society of Mechanical Engineers (ASME), p. 545-546 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2006

    An efficient hybrid strategy for temporal planning

    Xing, Z., Chen, Y. & Zhang, W., 2006, Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems - Third International Conference, CPAIOR 2006, Proceedings. Springer Verlag, p. 273-287 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3990 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Data mining methods for modeling gene expression regulation and their applications

    Zhang, W., 2006, Proceedings - Sixth International Conference on Data Mining, ICDM 2006. p. 7 1 p. 4053029. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Identification and evaluation of weak community structures in networks

    Ruan, J. & Zhang, W., 2006, Proceedings of the 21st National Conference on Artificial Intelligence and the 18th Innovative Applications of Artificial Intelligence Conference, AAAI-06/IAAI-06. p. 470-475 6 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    19 Scopus citations
  • The role of the stress environment on fibrocartilage development

    Thomopoulos, S., Genin, G., Das, R. & Birman, V., 2006, Proceedings of the 2006 SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2006. p. 2101-2105 5 p. (Proceedings of the 2006 SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2006; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2005

    An analytical solution for the stress field along compressive regions of tendon and its role on proteoglycan synthesis

    Birman, V., Genin, G. M. & Thomopoulos, S., 2005, Proceedings of the 2005 Summer Bioengineering Conference, 2005 SBC. p. 505-506 2 p. (Proceedings of the 2005 Summer Bioengineering Conference; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Differential gene expression in Papaver-species in comparison with alkaloid profiles

    Ziegler, J. & Kutchan, T. M., 2005, III WOCMAP Congress on Medicinal and Aromatic Plants - Volume 1: Bioprospecting and Ethnopharmacology. International Society for Horticultural Science, p. 173-178 6 p. (Acta Horticulturae; vol. 675).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Molecular genetic analysis of an O-methyltransferase of the opium poppy Papaver somniferum

    Ounaroon, A., Frick, S. & Kutchan, T. M., 2005, III WOCMAP Congress on Medicinal and Aromatic Plants - Volume 1: Bioprospecting and Ethnopharmacology. International Society for Horticultural Science, p. 167-171 5 p. (Acta Horticulturae; vol. 675).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Studying morphine biosynthesis using transgenic opium poppy (Papaver somniferum L.)

    Frick, S., Kramell, R., Kutchan, T. M. & Larkin, P. J., 2005, III WOCMAP Congress on Medicinal and Aromatic Plants - Volume 6: Traditional edicine and Nutraceuticals. International Society for Horticultural Science, p. 37-43 7 p. (Acta Horticulturae; vol. 680).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • 2004

    A linear search strategy using bounds

    Climer, S. & Zhang, W., 2004, Proceedings of the 14th International Conference on Automated Planning and Scheduling, ICAPS 2004. Zilberstein, S., Koehler, J. & Koenig, S. (eds.). p. 132-141 10 p. (Proceedings of the 14th International Conference on Automated Planning and Scheduling, ICAPS 2004).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations