DBBS - Molecular Genetics and Genomics

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  • 2022

    RAW-GNN: RAndom Walk Aggregation based Graph Neural Network

    Jin, D., Wang, R., Ge, M., He, D., Li, X., Lin, W. & Zhang, W., 2022, Proceedings of the 31st International Joint Conference on Artificial Intelligence, IJCAI 2022. De Raedt, L. & De Raedt, L. (eds.). International Joint Conferences on Artificial Intelligence, p. 2108-2114 7 p. (IJCAI International Joint Conference on Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2021

    A Scalable Approximation Algorithm for Weighted Longest Common Subsequence

    Buhler, J., Lavastida, T., Lu, K. & Moseley, B., 2021, Euro-Par 2021: Parallel Processing - 27th International Conference on Parallel and Distributed Computing, Proceedings. Sousa, L., Roma, N. & Tomás, P. (eds.). Springer Science and Business Media Deutschland GmbH, p. 368-384 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12820 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Enabling real-time irregular data-flow pipelines on SIMD Devices

    Plano, T. & Buhler, J., Aug 9 2021, 50th International Conference on Parallel Processing Workshop, ICPP 2021 - Proceedings. Association for Computing Machinery, (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Platform Agnostic Streaming Data Application Performance Models

    Faber, C. J., Plano, T., Kodali, S., Xiao, Z., Dwaraki, A., Buhler, J. D., Chamberlain, R. D. & Cabrera, A. M., 2021, Proceedings of RSDHA 2021: Redefining Scalability for Diversely Heterogeneous Architectures, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 17-26 10 p. (Proceedings of RSDHA 2021: Redefining Scalability for Diversely Heterogeneous Architectures, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Supporting Multi-messenger Astrophysics with Fast Gamma-ray Burst Localization

    Wheelock, J., Kanu, W., Sudvarg, M., Xiao, Z., Buhler, J. D., Chamberlain, R. D. & Buckley, J. H., 2021, Proceedings of UrgentHPC 2021: 3rd International Workshop on HPC for Urgent Decision Making, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 21-28 8 p. (Proceedings of UrgentHPC 2021: 3rd International Workshop on HPC for Urgent Decision Making, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Toward Evaluating High-Level Synthesis Portability and Performance between Intel and Xilinx FPGAs

    Cabrera, A. M., Young, A. R., Lambert, J., Xiao, Z., An, A., Lee, S., Jin, Z., Kim, J., Buhler, J., Chamberlain, R. D. & Vetter, J. S., Apr 27 2021, International Workshop on OpenCL, IWOCL 2021. Association for Computing Machinery, 7. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2020

    Community-centric graph convolutional network for unsupervised community detection

    He, D., Song, Y., Jin, D., Feng, Z., Zhang, B., Yu, Z. & Zhang, W., 2020, Proceedings of the 29th International Joint Conference on Artificial Intelligence, IJCAI 2020. Bessiere, C. (ed.). International Joint Conferences on Artificial Intelligence, p. 3515-3521 7 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2021-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    17 Scopus citations

  • Early and efficient identification of useless constraint propagation for alldifferent constraints

    Zhang, X., Gao, J., Lv, Y. & Zhang, W., 2020, Proceedings of the 29th International Joint Conference on Artificial Intelligence, IJCAI 2020. Bessiere, C. (ed.). International Joint Conferences on Artificial Intelligence, p. 1126-1133 8 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2021-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Fully automated classification of glomerular lesions in lupus nephritis

    Ginley, B., Jen, K. Y., Rosenberg, A., Rossi, G. M., Jain, S. & Sarder, P., 2020, Medical Imaging 2020: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 113200Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11320).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Neutrophil Extracellular Traps (NETs): An unexplored territory in renal pathobiology, a pilot computational study

    Santo, B. A., Segal, B. H., Tomaszewski, J. E., Mohammad, I., Worral, A. M., Jain, S., Visser, M. B. & Sarder, P., 2020, Medical Imaging 2020: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 1132012. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11320).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Reducing Queuing Impact in Irregular Data Streaming Applications

    Timcheck, S. W. & Buhler, J. D., Nov 2020, Proceedings of IA3 2020: 10th Workshop on Irregular Applications: Architectures and Algorithms, Held in conjunction with SC 2020: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 22-30 9 p. 9407261. (Proceedings of IA3 2020: 10th Workshop on Irregular Applications: Architectures and Algorithms, Held in conjunction with SC 2020: The International Conference for High Performance Computing, Networking, Storage and Analysis).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Scheduling irregular dataflow pipelines on SIMD architectures

    Plano, T. & Buhler, J., Feb 22 2020, WPMVP 2020 - Proceedings of the 2020 6th Workshop on Programming Models for SIMD/Vector Processing, co-located with PPoPP 2020. Eitzinger, J. & Lacassagne, L. (eds.). Association for Computing Machinery, Inc, (WPMVP 2020 - Proceedings of the 2020 6th Workshop on Programming Models for SIMD/Vector Processing, co-located with PPoPP 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Single cell per well trapping and analysis of chlamydomonas reinhardtii using surface acoustic waves

    Cui, M., Bayly, P. V., Dutcher, S. K. & Meacham, J. M., 2020, MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences. Chemical and Biological Microsystems Society, p. 749-750 2 p. (MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2019

    Examining structural patterns and causality in diabetic nephropathy using inter-glomerular distance and Bayesian graphical models

    Majumdar, A., Jen, K. Y., Jain, S., Tomaszewski, J. E. & Sarder, P., 2019, Medical Imaging 2019: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 1095608. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10956).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Graph convolutional networks meet markov random fields: Semi-supervised community detection in attribute networks

    Jin, D., Liu, Z., Li, W., He, D. & Zhang, W., 2019, 33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019. AAAI press, p. 152-159 8 p. (33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    71 Scopus citations

  • Network-specific variational auto-encoder for embedding in attribute networks

    Jin, D., Li, B., Jiao, P., He, D. & Zhang, W., 2019, Proceedings of the 28th International Joint Conference on Artificial Intelligence, IJCAI 2019. Kraus, S. (ed.). International Joint Conferences on Artificial Intelligence, p. 2663-2669 7 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2019-August).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    29 Scopus citations
  • 2018

    A fast algorithm for generalized arc consistency of the alldifferent constraint

    Zhang, X., Li, Q. & Zhang, W., 2018, Proceedings of the 27th International Joint Conference on Artificial Intelligence, IJCAI 2018. Lang, J. (ed.). International Joint Conferences on Artificial Intelligence, p. 1398-1403 6 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2018-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • A network-specific markov random field approach to community detection

    He, D., You, X., Feng, Z., Jin, D., Yang, X. & Zhang, W., 2018, 32nd AAAI Conference on Artificial Intelligence, AAAI 2018. AAAI press, p. 306-313 8 p. (32nd AAAI Conference on Artificial Intelligence, AAAI 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    20 Scopus citations

  • Computational analysis of the structural progression of human glomeruli in diabetic nephropathy

    Ginley, B. G., Tomaszewski, J. E., Jen, K. Y., Fogo, A., Jain, S. & Sarder, P., 2018, Medical Imaging 2018: Digital Pathology. Gurcan, M. N. & Tomaszewski, J. E. (eds.). SPIE, 105810A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10581).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Deep variational auto-encoders for unsupervised glomerular classification

    Lutnick, B., Yacoub, R., Jen, K. Y., Tomaszewski, J. E., Jain, S. & Sarder, P., 2018, Medical Imaging 2018: Digital Pathology. Gurcan, M. N. & Tomaszewski, J. E. (eds.). SPIE, 105810C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10581).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Differences in the commonly used genotype imputation algorithms and their imputation accuracy estimates

    Parn, K., Pirinen, M., Kals, M., Magi, R., Salomaa, V., Boehnke, M., Hall, I., Stitziel, N., Freimer, N., Daly, M., Palotie, A., Ripatti, S. & Palta, P., Dec 24 2018, Proceedings - IEEE 14th International Conference on eScience, e-Science 2018. Institute of Electrical and Electronics Engineers Inc., p. 293-294 2 p. 8588677. (Proceedings - IEEE 14th International Conference on eScience, e-Science 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Examining structural changes in diabetic nephropathy using inter-nuclear distances in glomeruli: A comparison of variously automated methods

    Simon, O., Yacoub, R., Jain, S., Tomaszewski, J. E. & Sarder, P., 2018, Medical Imaging 2018: Digital Pathology. Gurcan, M. N. & Tomaszewski, J. E. (eds.). SPIE, 105810B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10581).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Integrative network embedding via deep joint reconstruction

    Jin, D., Ge, M., Yang, L., He, D., Wang, L. & Zhang, W., 2018, Proceedings of the 27th International Joint Conference on Artificial Intelligence, IJCAI 2018. Lang, J. (ed.). International Joint Conferences on Artificial Intelligence, p. 3407-3413 7 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2018-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    13 Scopus citations

  • Nonlinear shape regression for filtering segmentation results from calcium imaging

    Wang, J., Fu, Z., Sadeghradehyazdi, N., Kipnis, J. & Acton, S. T., Aug 29 2018, 2018 IEEE International Conference on Image Processing, ICIP 2018 - Proceedings. IEEE Computer Society, p. 738-742 5 p. 8451845. (Proceedings - International Conference on Image Processing, ICIP).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Optical imaging of functional connectivity across development in the mouse cortex

    Rahn, R. M., Bice, A. R., Brier, L. M., Dougherty, J. D. & Culver, J. P., 2018, Optics and the Brain, BRAIN 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F88-BRAIN 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Robust detection of link communities in large social networks by exploiting link semantics

    Jin, D., Wang, X., He, R., He, D., Dang, J. & Zhang, W., 2018, 32nd AAAI Conference on Artificial Intelligence, AAAI 2018. AAAI press, p. 314-321 8 p. (32nd AAAI Conference on Artificial Intelligence, AAAI 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    26 Scopus citations

  • Using a Network Approach to Identify Genes Important during Anther Development

    Tamim, S. & Meyers, B., Aug 15 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 530 1 p. (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2017

    Mercator: A GPGPU framework for irregular streaming applications

    Cole, S. V. & Buhler, J., Sep 12 2017, Proceedings - 2017 International Conference on High Performance Computing and Simulation, HPCS 2017. Smari, W. W. (ed.). Institute of Electrical and Electronics Engineers Inc., p. 727-736 10 p. 8035150. (Proceedings - 2017 International Conference on High Performance Computing and Simulation, HPCS 2017).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Sn2 lipase labile prodrugs and contact-facilitated drug delivery for lipid-encapsulated nanomedicines

    Pan, D., Cui, G., Pham, C. T. N., Tomasson, M. H., Weilbaecher, K. N. & Lanza, G. M., 2017, Control of Amphiphile Self-Assembling at the Molecular Level: Supra-Molecular Assemblies with Tuned Physicochemical Properties for Delivery Applications. Ilies, M. A. (ed.). American Chemical Society, p. 189-209 21 p. (ACS Symposium Series; vol. 1271).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2016

    A hierarchy of modeling frameworks for cyanobacterial metabolism: From gsms to ME models

    Mueller, T., Gopalakrishnan, S., Simons, M., Pakrasi, H. B. & Maranas, C. D., 2016, Metabolic Engineering 11. AIChE, p. 549-550 2 p. (Metabolic Engineering 11).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Detect overlapping communities via ranking node popularities

    Di, J., Wang, H., Dang, J., He, D. & Zhang, W., 2016, 30th AAAI Conference on Artificial Intelligence, AAAI 2016. AAAI press, p. 172-178 7 p. (30th AAAI Conference on Artificial Intelligence, AAAI 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    26 Scopus citations

  • Semantic community identification in large attribute networks

    Wang, X., Jin, D., Cao, X., Yang, L. & Zhang, W., 2016, 30th AAAI Conference on Artificial Intelligence, AAAI 2016. AAAI press, p. 265-271 7 p. (30th AAAI Conference on Artificial Intelligence, AAAI 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    140 Scopus citations
  • 2015

    A stochastic model for detecting heterogeneous link communities in complex networks

    He, D., Liu, D., Jin, D. & Zhang, W., Jun 1 2015, Proceedings of the 29th AAAI Conference on Artificial Intelligence, AAAI 2015 and the 27th Innovative Applications of Artificial Intelligence Conference, IAAI 2015. AI Access Foundation, p. 130-136 7 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    26 Scopus citations

  • Can psychometric measurement models inform behavior genetic models? A bayesian model comparison approach

    Wang, T., Wood, P. K. & Heath, A. C., 2015, Dependent Data in Social Sciences Research: Forms, Issues, and Methods of Analysis. Wiedermann, W., von Eye, A. & Stemmler, M. (eds.). Springer New York LLC, p. 231-259 29 p. (Springer Proceedings in Mathematics and Statistics; vol. 145).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Deadlock-free buffer configuration for stream computing

    Li, P., Beard, J. & Buhler, J., Feb 7 2015, Proceedings of the 6th International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2015. Balaji, P., Guo, M. & Huang, Z. (eds.). Association for Computing Machinery, p. 164-169 6 p. (Proceedings of the 6th International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Lens Biology and Biochemistry

    Hejtmancik, J. F., Riazuddin, S. A., McGreal, R., Liu, W., Cvekl, A. & Shiels, A., 2015, Molecular Biology of Eye Disease, 2015. Nickerson, J. M. & Hejtmancik, J. F. (eds.). Elsevier B.V., p. 169-201 33 p. (Progress in Molecular Biology and Translational Science; vol. 134).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    54 Scopus citations

  • Marginalized denoising for link prediction and multi-label learning

    Chen, Z., Chen, M., Weinberger, K. Q. & Zhang, W., Jun 1 2015, Proceedings of the 29th AAAI Conference on Artificial Intelligence, AAAI 2015 and the 27th Innovative Applications of Artificial Intelligence Conference, IAAI 2015. AI Access Foundation, p. 1707-1713 7 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 3).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    17 Scopus citations

  • Modeling with node degree preservation can accurately find communities

    Jin, D., Chen, Z., He, D. & Zhang, W., Jun 1 2015, Proceedings of the 29th AAAI Conference on Artificial Intelligence, AAAI 2015 and the 27th Innovative Applications of Artificial Intelligence Conference, IAAI 2015. AI Access Foundation, p. 160-167 8 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    32 Scopus citations

  • Molecular Genetics of Cataract

    Shiels, A. & Hejtmancik, J. F., 2015, Molecular Biology of Eye Disease, 2015. Nickerson, J. M. & Hejtmancik, J. F. (eds.). Elsevier B.V., p. 203-218 16 p. (Progress in Molecular Biology and Translational Science; vol. 134).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    60 Scopus citations

  • Overview of the Lens

    Hejtmancik, J. F. & Shiels, A., 2015, Molecular Biology of Eye Disease, 2015. Nickerson, J. M. & Hejtmancik, J. F. (eds.). Elsevier B.V., p. 119-127 9 p. (Progress in Molecular Biology and Translational Science; vol. 134).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    32 Scopus citations
  • 2014

    13C-metabolic flux analysis of cyanobacterial photo-fermentation

    You, L., He, L., Berla, B., Pakrasi, H. B. & Tang, Y. J., 2014, International Congress on Energy 2014, ICE 2014 - Topical Conference at the 2014 AIChE Annual Meeting. AIChE, p. 1972-1973 2 p. (International Congress on Energy 2014, ICE 2014 - Topical Conference at the 2014 AIChE Annual Meeting; vol. 3).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 13C-Metabolic flux analysis of cyanobacterial photo-fermentation

    You, L., He, L., Berla, B., Pakrasi, H. B. & Tang, Y. J., 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, p. 1205-1206 2 p. (Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A marginalized denoising method for link prediction in relational data

    Chen, Z. & Zhang, W., 2014, SIAM International Conference on Data Mining 2014, SDM 2014. Zaki, M. J., Banerjee, A., Parthasarathy, S., Ning-Tan, P., Obradovic, Z. & Kamath, C. (eds.). Society for Industrial and Applied Mathematics Publications, p. 298-306 9 p. (SIAM International Conference on Data Mining 2014, SDM 2014; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    11 Scopus citations

  • Orchestrating safe streaming computations with precise control

    Li, P., Agrawal, K., Buhler, J. & Chamberlain, R. D., 2014, 2014 20th IEEE International Conference on Parallel and Distributed Systems, ICPADS 2014 - Proceedings. IEEE Computer Society, p. 1017-1022 6 p. 7097925. (Proceedings of the International Conference on Parallel and Distributed Systems - ICPADS; vol. 2015-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Polyhedral constraints for bounded-memory execution of synchronized filtering dataflow

    Li, P. & Buhler, J., Oct 8 2014, Proceedings - 2013 3rd Workshop on Data-Flow Execution Models for Extreme Scale Computing, DFM 2013. Institute of Electrical and Electronics Engineers Inc., p. 29-37 9 p. 6919193. (Proceedings - 2013 3rd Workshop on Data-Flow Execution Models for Extreme Scale Computing, DFM 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • WOODSTOCC: Extracting latent parallelism from a DNA sequence aligner on a GPU

    Cole, S. V., Gardner, J. R. & Buhler, J. D., Sep 16 2014, Proceedings - IEEE 13th International Symposium on Parallel and Distributed Computing, ISPDC 2014. Muntean, T., Rolland, R. & Mugwaneza, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 197-204 8 p. 6900220. (Proceedings - IEEE 13th International Symposium on Parallel and Distributed Computing, ISPDC 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2013

    Domain adaptation with topical correspondence learning

    Chen, Z. & Zhang, W., 2013, IJCAI 2013 - Proceedings of the 23rd International Joint Conference on Artificial Intelligence. p. 1280-1286 7 p. (IJCAI International Joint Conference on Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    14 Scopus citations

  • MethylCRF, an algorithm for estimating absolute methylation levels at single CpG resolution from methylation enrichment and restriction enzyme sequencing methods

    Stevens, M., Cheng, J. B., Xie, M., Costello, J. F. & Wang, T., Apr 3 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 266-268 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • The small RNome of clostridium acetobutylicum that responds to butanol and butyrate stress

    Venkataramanan, K. P., Jones, S., McCormick, K. P., Kunjeti, S. G., Ralston, M., Meyers, B. C. & Papoutsakis, E. T., 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 267 1 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2012

    Cell type specific analysis of human transcriptome data

    Xu, X., Nehorai, A. & Dougherty, J., Dec 1 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 99-100 2 p. 6507737. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review