DBBS - Biomedical Informatics and Data Science

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  • 2007

    Design and realization of a distributed vector sensor for polarization diversity applications

    Lo Monte, L., Elnour, B., Erricolo, D. & Nehorai, A., 2007, 2007 International Waveform Diversity and Design Conference, WDD. p. 358-361 4 p. 4339443. (2007 International Waveform Diversity and Design Conference, WDD).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    29 Scopus citations

  • Differential cytotoxicity of metal oxide nanoparticles

    Chen, J., Zhu, J., Cho, H. H., Cui, K., Li, F., Zhou, X., Rogers, J. T., Wong, S. T. C. & Huang, X., 2007, 2007 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2007, Technical Proceedings. p. 670-673 4 p. (2007 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2007, Technical Proceedings; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Directional diffusivity as a magnetic resonance (MR) biomarker in demyelinating disease

    Benzinger, T. L. S., Cross, A. H., Xu, J., Naismith, R., Sun, S. W. & Song, S. K., 2007, Smart Biomedical and Physiological Sensor Technology V. 67590O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6759).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Dissecting network motifs by identifying promoter features that govern differential gene expression

    Harari, O. & Zwir, I., Dec 1 2007, Summer Computer Simulation Conference 2007, SCSC'07, Part of the 2007 Summer Simulation Multiconference, SummerSim'07. p. 817-826 10 p. (Summer Computer Simulation Conference 2007, SCSC'07, Part of the 2007 Summer Simulation Multiconference, SummerSim'07; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Ensemble control of linear systems

    Li, J. S. & Khaneja, N., 2007, Proceedings of the 46th IEEE Conference on Decision and Control 2007, CDC. Institute of Electrical and Electronics Engineers Inc., p. 3768-3773 6 p. 4434971. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    18 Scopus citations

  • Ensemble control on lie groups

    Li, J. S. & Khaneja, N., 2007, Final Program and Book of Abstracts - NOLCOS 2007: 7th IFAC Symposium on Nonlinear Control Systems. PART 1 ed. IFAC Secretariat, p. 123-128 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 7, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations

  • Evaluating tagging behavior in social bookmarking systems: Metrics and design heuristics

    Farooq, U., Kannampallil, T. G., Song, Y., Ganoe, C. H., Carroll, J. M. & Giles, L., 2007, GROUP'07 - Proceedings of the 2007 International ACM Conference on Supporting Group Work. p. 351-360 10 p. (GROUP'07 - Proceedings of the 2007 International ACM Conference on Supporting Group Work).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    74 Scopus citations

  • High content image sequence analysis for quantifying calcium signals inside cells with mutant presenilin-1 of familial alzheimer disease

    Li, F., Zhou, X., Zhu, J., Ma, J. & Wong, S. T. C., Jan 1 2007, 2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA. IEEE Computer Society, p. 31-34 4 p. 4400877. (2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Identifying the promoter features governing differential kinetics of co-regulated genes using fuzzy expressions

    Zaliz, R. R., Harari, O., Escudero, C. R. & Zwir, I., 2007, 2007 IEEE International Conference on Fuzzy Systems, FUZZY. 4295532. (IEEE International Conference on Fuzzy Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Information theoretic radar waveform design for multiple targets

    Leshem, A., Naparstek, O. & Nehorai, A., 2007, 2007 International Waveform Diversity and Design Conference, WDD. p. 362-366 5 p. 4339444. (2007 International Waveform Diversity and Design Conference, WDD).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    11 Scopus citations

  • Mining and predicting CpG islands

    Previti, C., Harari, O. & Del Val, C., 2007, 2007 IEEE International Conference on Fuzzy Systems, FUZZY. 4295540. (IEEE International Conference on Fuzzy Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Mitosis cell identification with conditional random fields

    Liang, L., Zhou, X., Li, F., Wong, S. T. C., Huckins, J. & King, R. W., 2007, 2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA. IEEE Computer Society, p. 9-12 4 p. 4400872. (2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    24 Scopus citations

  • Modeling genetic networks: Comparison of static and dynamic models

    Rubio-Escudero, C., Harari, O., Cordón, O. & Zwir, I., 2007, Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 5th European Conference, EvoBIO 2007, Proceedings. Springer Verlag, p. 78-89 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4447 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Novel approaches to the prediction of CpG islands and their methylation status

    Previti, C., Harari, O., Zwir, I. & Del Val, C., 2007, Summer Computer Simulation Conference 2007, SCSC'07, Part of the 2007 Summer Simulation Multiconference, SummerSim'07. p. 833-840 8 p. (Summer Computer Simulation Conference 2007, SCSC'07, Part of the 2007 Summer Simulation Multiconference, SummerSim'07; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Novel cell segmentation and online learning algorithms for cell phase identification in automated time-lapse microscopy

    Wang, M., Zhou, X., Li, F., Huckins, J., King, R. W. & Wong, S. T. C., Nov 27 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. p. 65-68 4 p. 4193223. (2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    22 Scopus citations

  • Novel nuclei segmentation and cell phase identification using Markov model

    Li, F., Zhou, X. & Wong, S. T. C., 2007, Computational Models For Life Sciences (CMLS '07) - 2007 International Symposium. p. 96-103 8 p. (AIP Conference Proceedings; vol. 952).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Online phenotype discovery in high-content RNAi screens using gap statistics

    Yin, Z., Zhou, X., Bakal, C., Li, F., Sun, Y., Perrimon, N. & Wong, S. T. C., 2007, Computational Models For Life Sciences (CMLS '07) - 2007 International Symposium. p. 86-95 10 p. (AIP Conference Proceedings; vol. 952).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Optimal beampattern synthesis of a polarized array

    Xiao, J. J. & Nehorai, A., 2007, 2007 IEEE/SP 14th Workshop on Statistical Signal Processing, SSP 2007, Proceedings. p. 463-467 5 p. 4301301. (IEEE Workshop on Statistical Signal Processing Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Polarization diversity for detecting targets in heavy inhomogeneous clutter

    Hurtado, M. & Nehorai, A., 2007, IEEE International Symposium on Electromagnetic Compatibility, EMC 2007. 4305626. (IEEE International Symposium on Electromagnetic Compatibility).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Polarization diversity for detecting targets in inhomogeneous clutter

    Hurtado, M. & Nehorai, A., 2007, 2007 International Waveform Diversity and Design Conference, WDD. p. 382-386 5 p. 4339448. (2007 International Waveform Diversity and Design Conference, WDD).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Radar estimation of building layouts using jump-diffusion

    Nikolic, M. M., Ortner, M., Nehorai, A. & Djordjevic, A. R., 2007, 2007 2nd IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing, CAMPSAP. p. 177-180 4 p. 4497994. (2007 2nd IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing, CAMPSAP).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • R-CAST-MED: Applying intelligent agents to support emergency medical decision-making teams

    Zhu, S., Abraham, J., Paul, S. A., Reddy, M., Yen, J., Pfaff, M. & DeFlitch, C., 2007, Artificial Intelligence in Medicine - 11th Conference on Artificial Intelligence in Medicine, AIME 2007, Proceedings. p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4594 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations

  • Solutions for diffuse optical tomography using the Feynman-Kac formula and interacting particle method

    Cao, N., Ortner, M. & Nehorai, A., 2007, Optical Tomography and Spectroscopy of Tissue VII. 643402. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6434).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Targeting differentially co-regulated genes by multiobjective and multimodal optimization

    Harari, O., Rubio-Escudero, C. & Zwir, I., 2007, Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 5th European Conference, EvoBIO 2007, Proceedings. Springer Verlag, p. 68-77 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4447 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Using event based markov model simulation to analyze interactive human behavior

    Kannampallil, T. G. & Haynes, S. R., Jan 1 2007, Association for Information Systems - 13th Americas Conference on Information Systems, AMCIS 2007: Reaching New Heights. AIS/ICIS Administrative Office, p. 4087-4095 9 p. (Association for Information Systems - 13th Americas Conference on Information Systems, AMCIS 2007: Reaching New Heights; vol. 6).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2006

    Adaptive polarimetry design for a target in compound-Gaussian clutter

    Wang, J. & Nehorai, A., Mar 21 2006, 2006 International Waveform Diversity and Design Conference, WDD 2006 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1-5 5 p. (2006 International Waveform Diversity and Design Conference, WDD 2006 - Proceedings; vol. 2018-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    11 Scopus citations

  • A relationship between time-reversal imaging and maximum likelihood scattering estimation

    Shi, G. & Nehorai, A., 2006, 2006 IEEE Sensor Array and Multichannel Signal Processing Workshop Proceedings, SAM 2006. p. 500-504 5 p. (2006 IEEE Sensor Array and Multichannel Signal Processing Workshop Proceedings, SAM 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Array response kernel for EEG in four-shell ellipsoidal geometry

    Gutiérrez, D. & Nehorai, A., 2006, Conference Record of the 40th Asilomar Conference on Signals, Systems and Computers, ACSSC '06. p. 151-155 5 p. 4176533. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Biochemical transport modeling, estimation and detection in realistic environments

    Ortner, M. & Nehorai, A., 2006, Sensors, and Command, Control, Communications, and Intelligence (C3I) Technologies for Homeland Security and Homeland Defense V. 62010S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6201).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Classify cellular phenotype in high-throughput fluorescence microcopy images for RNAi genome-wide screening

    Wang, J., Zhou, X., Li, F. & Wong, S. T. C., 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006. 4015805. (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Coupling among collocated loops

    Nikolić, M. M., Djordjević, A. R. & Nehorai, A., Oct 2006, Proceedings of The European Conference on Antennas and Propagation: EuCAP 2006. European Space Agency, (European Space Agency, (Special Publication) ESA SP; vol. 626 SP).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Cramér-Rao bound analysis on multiple scattering in multistatic point scatterer estimation

    Shi, G. & Nehorai, A., 2006, 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing - Proceedings. p. IV1117-IV1120 1661169. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Discovering significant OPSM subspace clusters in massive gene expression data

    Gao, B. J., Griffith, O. L., Ester, M. & Jones, S. J. M., 2006, KDD 2006: Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery (ACM), p. 922-928 7 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; vol. 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    24 Scopus citations

  • Ensemble controllability of the bloch equations

    Li, J. S. & Khaneja, N., 2006, Proceedings of the 45th IEEE Conference on Decision and Control 2006, CDC. Institute of Electrical and Electronics Engineers Inc., p. 2483-2487 5 p. 4177466. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    13 Scopus citations

  • Fusion of domain knowledge for dynamic learning in transcriptional networks

    Harari, O., Romero-Zaliz, R., Rubio-Escudero, C. & Zwir, I., 2006, Intelligent Data Engineering and Automated Learning, IDEAL 2006 - 7th International Conference, Proceedings. Springer Verlag, p. 1067-1078 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4224 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Handling objects: A scenario based approach

    Kannampallil, T. G. & Daughtry, J. M., 2006, ACM SIGDOC 2006 - Proceedings of the 24th ACM International Conference on Design of Communication. p. 92-98 7 p. (ACM SIGDOC 2006 - Proceedings of the 24th ACM International Conference on Design of Communication).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Information theoretic radar waveform design for multiple targets

    Leshem, A. & Nehorai, A., 2006, 2006 IEEE Conference on Information Sciences and Systems, CISS 2006 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1408-1412 5 p. 4068026. (2006 IEEE Conference on Information Sciences and Systems, CISS 2006 - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Localization of diffusive sources using distributed sequential Bayesian methods in wireless sensor networks

    Zhao, T. & Nehorai, A., 2006, 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing - Proceedings. p. IV985-IV988 1661136. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Mining structural databases: An Evolutionary Multi-Objetive Conceptual Clustering methodology

    Romero-Zaliz, R., Rubio-Escudero, C., Cordón, O., Harari, O., Del Val, C. & Zwir, I., 2006, Applications of Evolutionary Computing - EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Proceedings. p. 159-171 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3907 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Optimal design of a generalized compound eye particle detector array

    Nehorai, A., Liu, Z. & Paldi, E., 2006, Intelligent Integrated Microsystems. 62320O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6232).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Optimal polarized waveform design for active target parameter estimation using electromagnetic vector sensors

    Hurtado, M. & Nehorai, A., 2006, 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing - Proceedings. p. V1125-V1128 1661478. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 5).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Optimal selection of microarray analysis methods using a conceptual clustering algorithm

    Rubio-Escudero, C., Romero-Záliz, R., Cordón, O., Harari, O., Del Val, C. & Zwir, I., 2006, Applications of Evolutionary Computing - EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Proceedings. p. 172-183 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3907 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Performance analysis of quantifying fluorescence of target-captured microparticles from microscopy images

    Sarder, P. & Nehorai, A., 2006, 2006 IEEE Sensor Array and Multichannel Signal Processing Workshop Proceedings, SAM 2006. p. 289-293 5 p. 1677205. (2006 IEEE Sensor Array and Multichannel Signal Processing Workshop Proceedings, SAM 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Presentation Discovery: Building a better icon

    Payne, P. R. O. & Starren, J., 2006, CHI'06 Extended Abstracts on Human Factors in Computing Systems, CHI EA'06. p. 1223-1228 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Seismic shape parameters estimation and ground-roll suppression using vector-sensor beamforming

    Donno, D., Spagnolini, U. & Nehorai, A., 2006, OCEANS 2006. 4098905. (OCEANS 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Seismic velocity/polarization estimation and polarized wavefield separation

    Donno, D., Nehorai, A. & Spagnolini, U., 2006, 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing - Proceedings. p. IV1181-IV1184 1661185. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Sequential detection for a target in compound-gaussian clutter

    Wang, J. & Nehorai, A., 2006, Conference Record of the 40th Asilomar Conference on Signals, Systems and Computers, ACSSC '06. p. 745-751 7 p. 4176658. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Statistical distribution of chemical fingerprints

    Joshua Swamidass, S. & Baldi, P., Jun 23 2006, Fuzzy Logic and Applications - 6th International Workshop, WILF 2005, Revised Selected Papers. p. 11-18 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3849 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Time course of activation of human occipital cortex measured with the event-related optical signal (EROS)

    Gratton, G., Low, K. A., Maclin, E. L., Brumback, C. R., Gordon, B. & Fabiani, M., 2006, Biomedical Topical Meeting, BIO 2006. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Tumor detection using Bayesian conjugate prior in diffuse optical tomography

    Choudhary, H. & Nehorai, A., 2006, 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'06. p. 2655-2658 4 p. 4029516. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review