DBBS - Biochemistry, Biophysics, and Structural Biology

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  • 2010

    Principal components of brain deformation in response to skull acceleration: The roles of sliding and tethering between the brain and skull

    Abney, T. M., Feng, Y. A., Pless, R., Okamoto, R. J., Genin, G. M. & Bayly, P. V., 2010, 26th Southern Biomedical Engineering Conference SBEC 2010. p. 9-12 4 p. (IFMBE Proceedings; vol. 32 IFMBE).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Probing cytoskeletal mechanics using biochemical inhibitors

    Pryse, K. M., Abney, T. M., Genin, G. M. & Elson, E. L., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 357-358 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Scatterer induced mode splitting in active microcavities

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2010, Conference on Lasers and Electro-Optics, CLEO 2010. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Scatterer induced mode splitting in active microcavities

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2010, Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010. 5500453. (Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Self-pulsing in on-chip Er-doped microcavity lasers

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2010, Conference on Lasers and Electro-Optics, CLEO 2010. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Self-pulsing in on-chip Er-doped microcavity lasers

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2010, Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010. 5499603. (Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Strategies for developing pH sensitive fluorescent probes

    Berezin, M. Y., Guo, K., Lee, H., Akers, W., Almutairi, A., Fréchet, J. M. J. & Achilefu, S., 2010, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications II. 75760F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7576).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • The dominant mechanical interaction between the brain and skull in vivo is sliding arrested at key points of brain-skull tethering

    Abney, T. M., Feng, Y. A., Pless, R., Okamoto, R. J., Genin, G. M. & Bayly, P. V., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 907-908 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • The nanostructure and nanomechanics of a novel black widow spider silk assessed using atomic force microscopy

    Tang, S. Y., Hsia, Y. & Vierra, C., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 951-952 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Validation of magnetic resonance elastography by dynamic shear testing in the shear wave regime

    Okamoto, R. J., Clayton, E. H., Wilson, K. S. & Bayly, P. V., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 391-392 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • VDBench: A benchmarking toolkit for thin-client based virtual desktop environments

    Berryman, A., Calyam, P., Honigford, M. & Lai, A. M., 2010, Proceedings - 2nd IEEE International Conference on Cloud Computing Technology and Science, CloudCom 2010. p. 480-487 8 p. 5708490. (Proceedings - 2nd IEEE International Conference on Cloud Computing Technology and Science, CloudCom 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    44 Scopus citations

  • Wave propagation in the human brain and skull imaged in vivo by MR elastography

    Clayton, E. H., Genin, G. M. & Bayly, P. V., 2010, 26th Southern Biomedical Engineering Conference SBEC 2010. p. 31-33 3 p. (IFMBE Proceedings; vol. 32 IFMBE).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 2009

    Active and passive responses of myofibroblasts in response to mechanical stretching in 3D culture

    Nathan, A. C., Lee, S. L., Marquez, J. P., Ju, T., Pryse, K. M., Elson, E. L. & Genin, G. M., 2009, Proceedings of the ASME Summer Bioengineering Conference, SBC2008. PART B ed. p. 649-650 2 p. (Proceedings of the ASME Summer Bioengineering Conference, SBC2008; no. PART B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • A new perspective on control of uncertain complex systems

    Li, J. S., 2009, Proceedings of the 48th IEEE Conference on Decision and Control held jointly with 2009 28th Chinese Control Conference, CDC/CCC 2009. Institute of Electrical and Electronics Engineers Inc., p. 708-713 6 p. 5400906. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Anisotropic mechanical properties of soft tissues by magnetic resonance elastography

    Namani, R., Wood, M., Sakiyama-Elbert, S. E. & Bayly, P. V., Dec 1 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART B ed. p. 703-704 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Automated method for calculation of a load-independent index of isovolumic pressure decay from left ventricular pressure data

    Shmuylovich, L. & Kovács, S. J., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3031-3034 4 p. 5333753. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Bayesian network approach to understand regulation of biological processes in cyanobacteria

    Elvitigala, T. R., Singh, A. K., Pakrasi, H. B. & Ghosh, B. K., 2009, Proceedings of the 48th IEEE Conference on Decision and Control held jointly with 2009 28th Chinese Control Conference, CDC/CCC 2009. Institute of Electrical and Electronics Engineers Inc., p. 3739-3744 6 p. 5399570. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Bridging the gap between academia and industry - Washington university's process control laboratories

    Tang, Y. J. & Heider, R., 2009, 2009 American Control Conference, ACC 2009. p. 2730-2734 5 p. 5160506. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Clinical attribute network for chronic lymphocytic leukemia

    Kundu, A., Ozer, H. G., Borlawsky, T., Circle, K. C., Huang, K. & Payne, P., 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009. p. 279-282 4 p. 5341786. (2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Compensation of thermal effect in high-Q toroidal microresonators by PDMS coating

    He, L., Xiao, Y. F., Dong, C., Zhu, J., Gaddam, V. & Yang, L., 2009, Conference on Lasers and Electro-Optics, CLEO 2009. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Compensation of thermal effect in high-Q toroidal microresonators by PDMS coating

    He, L., Xiao, Y. F., Dong, C., Zhu, J., Gaddam, V. & Yang, L., 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. 5225530. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Determination of early diastolic LV vortex formation time (T*) via the PDF formalism: A kinematic model of filling

    Ghosh, E., Shmuylovich, L. & Kovács, S. J., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 2883-2886 4 p. 5333111. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Developmental cardiovascular remodeling associated with reduced elastin levels in mice occurs after embryonic day 18

    Wagenseil, J. E., Ciliberto, C. H., Knutsen, R. H., Levy, M. A., Kovacs, A. & Mecham, R. P., 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART B ed. p. 1299-1300 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Dynamic network modeling of diurnal genes in cyanobacteria

    Elvitigala, T., Pakrasi, H. B. & Ghosh, B. K., 2009, Emergent Problems in Nonlinear Systems and Control. Thoma, M., Allgower, F. & Morari, M. (eds.). p. 21-41 21 p. (Lecture Notes in Control and Information Sciences; vol. 393).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Efficient affinity-based edit propagation using K-D tree

    Xu, K., Li, Y., Ju, T., Hu, S. M. & Liu, T. Q., 2009, Proceedings of ACM SIGGRAPH Asia 2009, SIGGRAPH Asia '09. 5 ed. Vol. 28. p. 118:1-118:6

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    152 Scopus citations

  • Engineering NIR dyes for fluorescent lifetime contrast

    Berezin, M. Y., Lee, H., Akers, W., Guo, K., Goiffon, R. J., Almutairi, A., Fréchet, J. M. J. & Achilefu, S., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 114-117 4 p. 5334834. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    18 Scopus citations

  • Feature-aligned shape texturing

    Xu, K., Cohen-Or, D., Ju, T., Liu, L., Zhang, H., Zhou, S. & Xiong, Y., 2009, Proceedings of ACM SIGGRAPH Asia 2009, SIGGRAPH Asia '09. 5 ed. Vol. 28. p. 108:1-108:7

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    40 Scopus citations

  • Frequency noise of a microchip raman laser

    Lu, T., Yang, L., Carmon, T., Min, B. & Vahala, K., 2009, Conference on Lasers and Electro-Optics, CLEO 2009. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Frequency noise of a microchip raman laser

    Lu, T., Yang, L., Carmon, T., Min, B. & Vahala, K., 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. 5225546. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • High-Q surface-plasmon whispering-gallery microcavity

    Min, B., Ostby, E., Sorger, V., Ulin-Avila, E., Yang, L., Zhang, X. & Vahala, K., 2009, International Quantum Electronics Conference, IQEC 2009. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • High-Q surface-plasmon whispering-gallery microcavity

    Min, B., Ostby, E., Sorger, V., Ulin-Avila, E., Yang, L., Zhang, X. & Vahala, K., 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. 5224841. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Hybrid input function estimation using a single-input-multiple- output (SIMO)approach

    Su, Y. & Shoghi, K. I., 2009, Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging. 726221. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7262).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • In Vivoimaging with near-infrared fluorescence lifetime contrast

    Akers, W. J., Berezin, M. Y., Lee, H. & Achilefu, S., 2009, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications. 71900T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7190).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Level crossing in toroidal on-chip microcavities

    Schwefel, H. G. L., Yang, L., Oxborrow, M., Stone, A. D., Vahala, K. J. & Carmon, T., 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. 5224269. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Level crossing in toroidal on-chip microcavities

    Schwefel, H. G. L., Yang, L., Oxborrow, M., Douglas Stone, A., Vahala, K. J. & Carmon, T., 2009, Conference on Lasers and Electro-Optics, CLEO 2009. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Localization precision of three-dimensional superresolution fluorescence imaging using a double-helix point spread function

    Lew, M., Thompson, M. A., Badieirostami, M. & Moerner, W. E., 2009, Computational Optical Sensing and Imaging, COSI 2009. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Modeling and simulation of diurnal biological processes in cyanobacteria

    Elvitigala, T. R., Pakrasi, H. B. & Ghosh, B. K., 2009, 2009 American Control Conference, ACC 2009. p. 343-348 6 p. 5159968. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Morphogenetic and residual strains in the embryonic chick brain

    Filas, B. A., Xu, G., Knutsen, A. K., Bayly, P. V. & Taber, L. A., 2009, Proceedings of the ASME Summer Bioengineering Conference, SBC2008. PART B ed. p. 1011-1012 2 p. (Proceedings of the ASME Summer Bioengineering Conference, SBC2008; no. PART B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Observation of EIT-like effect in a single high-Q microcavity

    Xiao, Y. F., He, L., Zhu, J. & Yang, L., 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. IEEE Computer Society, 5225973. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Observation of EIT-like effect in a single high-Q microcavity

    Xiao, Y. F., He, L., Zhu, J. & Yang, L., 2009, Conference on Lasers and Electro-Optics, CLEO 2009. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Ontologies for cancer nanotechnology research

    Thomas, D. G., Pappu, R. V. & Baker, N. A., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 4158-4161 4 p. 5333941. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Quantification of cortical surface convolution in the developing ferret and human infant

    Knutsen, A. K., Hill, J. E., Neil, J. J., Inder, T. E. & Bayly, P. V., 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART B ed. p. 1225-1226 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Real-time calculation of a limiting form of the renyi entropy for detection of subtle changes in scattering architecture

    Hughes, M. S., Marsh, J. N., Arbeit, J. M., Fuhrhop, R. W., Wallace, K. D., Thomas, T., Smith, J., Agyem, K., Lanza, G. M., Wickline, S. A., McCarthy, J. E. & Wickerhauser, M. V., Dec 1 2009, 2009 IEEE International Ultrasonics Symposium and Short Courses, IUS 2009. 5441843. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Real-time dynamic pricing for multiproduct models with time-dependent customer arrival rates

    Li, J. S. & Chen, S., 2009, 2009 American Control Conference, ACC 2009. p. 2196-2201 6 p. 5160689. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Recovery of linear performance in feedback systems with nonlinear instrumentation

    Ching, S. N., Kabamba, P. T. & Meerkov, S. M., 2009, 2009 American Control Conference, ACC 2009. p. 2545-2550 6 p. 5160612. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Residual stress in the mouse brain

    Xu, G., Bayly, P. V. & Taber, L. A., 2009, Proceedings of the ASME Summer Bioengineering Conference, SBC2008. PART B ed. p. 953-954 2 p. (Proceedings of the ASME Summer Bioengineering Conference, SBC2008; no. PART B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Shannon entropy: A specular echo-insensitive imaging metric showing myocardial anisotropy

    Cheng, Y. J., Marsh, J. N., Wallace, K. D., Zhang, L., Lanza, G. M., Wickline, S. A. & Hughes, M. S., 2009, 2009 IEEE International Ultrasonics Symposium and Short Courses, IUS 2009. 5441837. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Shear wave propagation in anisotropic soft tissues and gels

    Namani, R. & Bayly, P. V., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 1117-1122 6 p. 5333418. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • Single nanoparticle detection by mode splitting in ultra-high-Q microtoroid

    Zhu, J., Xiao, Y. F., Li, L., He, L., Chen, D. R. & Yang, L., 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. 5224840. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Single nanoparticle detection by mode splitting in ultra-high-Q microtoroid

    Zhu, J., Xiao, Y. F., Li, L., He, L., Chen, D. R. & Yang, L., 2009, Conference on Lasers and Electro-Optics, CLEO 2009. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review