DBBS - Biochemistry, Biophysics, and Structural Biology

Filter
Conference contribution

Search results

  • 2011

    Optimal asymptotic entrainment of phase-reduced oscillators

    Zlotnik, A. & Li, J. S., 2011, ASME 2011 Dynamic Systems and Control Conference and Bath/ASME Symposium on Fluid Power and Motion Control, DSCC 2011. p. 479-484 6 p. (ASME 2011 Dynamic Systems and Control Conference and Bath/ASME Symposium on Fluid Power and Motion Control, DSCC 2011; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    11 Scopus citations

  • Pilot-Protein: A high-throughput method for in silico discovery of peptides, proteins, and post-translational modifications

    Baliban, R., DiMaggio, P. A., Li, Z., Plazas-Mayorca, M., Garcia, B. A. & Floudas, C. A., 2011, 2011 Annual Meeting of the American Electrophoresis Society, AES 2011 - Topical Conference at the 2011 AIChE Annual Meeting. AIChE, p. 124-125 2 p. (2011 Annual Meeting of the American Electrophoresis Society, AES 2011 - Topical Conference at the 2011 AIChE Annual Meeting).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Quantitative evaluation of systematic imaging error due to uncertainty in tissue optical properties in high-density diffuse optical tomography

    Zhan, Y., Eggebrecht, A., Dehghani, H. & Culver, J., 2011, Optical Tomography and Spectroscopy of Tissue IX. 78960O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7896).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Quasilinear Control Theory: An overview

    Ching, S. N., Eun, Y., Kabamba, P. T. & Meerkov, S. M., 2011, Proceedings of the 18th IFAC World Congress. 1 PART 1 ed. IFAC Secretariat, p. 10958-10963 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 44, no. 1 PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Refining shape correspondence for similar objects using strain

    Phan, L., Knutsen, A. K., Bayly, P. V., Rugonyi, S. & Grimm, C., 2011, Eurographics Workshop on 3D Object Retrieval, 3DOR 2011 - co-event of Eurographics 2011. Schreck, T., Ferreira, A., Godil, A., Laga, H., Veltkamp, R. & Pratikakis, I. (eds.). Eurographics Association, p. 17-24 8 p. (Eurographics Workshop on 3D Object Retrieval, EG 3DOR).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Single nanoparticle detection using a microcavity laser

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2011, 2011 Conference on Lasers and Electro-Optics: Laser Science to Photonic Applications, CLEO 2011. 5950386. (2011 Conference on Lasers and Electro-Optics: Laser Science to Photonic Applications, CLEO 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Single nanoparticle detection using a microcavity laser

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2011, CLEO: Science and Innovations, CLEO_SI 2011. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Super-resolution 3D co-localization of protein superstructures and the cellular surface in live caulobacter crescentus

    Lew, M. D., Lee, S. F., Ptacin, J. L., Lee, M. K., Shapiro, L. & Moerner, W. E., 2011, Frontiers in Optics, FiO 2011. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Tailoring the gross morphology of the tendon-to-bone insertion for the reduction of stress concentrations

    Liu, Y., Birman, V., Chen, C., Thomopoulos, S. & Genin, G. M., 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 1017-1018 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Three-dimensional super-resolution imaging with a corkscrew point spread function

    Lew, M. D., Lee, S. F. & Moerner, W. E., 2011, Novel Techniques in Microscopy, NTM 2011. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • TRPM7, the Mg 2+ inhibited channel and kinase

    Bates-Withers, C., Sah, R. & Clapham, D. E., Dec 15 2011, Transient Receptor Potential Channels. Islam, S. & Islam, S. (eds.). p. 173-183 11 p. (Advances in Experimental Medicine and Biology; vol. 704).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    75 Scopus citations

  • Ultra-high-quality Whispering-Gallery-Mode resonators for single nanoparticle detection and measurement

    Yang, L., Zhu, J., He, L., Ozdemir, S. K. & Kim, W., 2011, Frontiers in Optics, FiO 2011. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2010

    An application of smoothing splines for molecular imaging of tumors using an improved calculation of a limiting form of Renyi entropy

    Hughes, M. S., Marsh, J. N., Wallace, K. D., Lanza, G. M., Wickline, S. A., McCarthy, J. E., Wickerhauser, M. V. & Maurizi, B. N., 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 45-48 4 p. 5935961. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • An enhanced biosensing model in coupled optical microresonators

    Xiao, Y. F. & Yang, L., 2010, Photonic Microdevices/Microstructures for Sensing II. 76820D. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7682).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Application of a limiting form of the Ŕnyi entropy for molecular imaging of tumors using a clinically relevant protocol

    Marsh, J. N., Wallace, K. D., Lanza, G. M., Wickline, S. A., Hughes, M. S., McCarthy, J. E. & Wickerhauser, M. V., 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 53-56 4 p. 5935829. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Application of the virtual fields method to magnetic resonance elastography data

    Pierron, F., Bayly, P. V. & Namani, R., 2010, Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010. p. 681-688 8 p. (Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Bi-Material attachment through a soft tissue interfacial system

    Liu, Y. X., Thomopoulos, S., Birman, V., Li, J. S. & Genin, G. M., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 865-866 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Biological applications of fluorescence lifetime imaging beyond microscopy

    Akers, W. J., Berezin, M. Y., Lee, H., Guo, K., Almutairi, A., Fréchet, J. M. J., Fischer, G. M., Daltrozzo, E. & Achilefu, S., 2010, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications II. 757612. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7576).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Comparison of dynamic mechanical testing and MR elastography of biomaterials

    Clayton, E. H., Okamoto, R. J., Wilson, K. S., Namani, R. & Bayly, P. V., 2010, Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010. p. 874-881 8 p. (Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Constrained Kalman filtering for IMRT optimization

    Dasanayake, I., El Naqa, I. & Li, J. S., 2010, 2010 49th IEEE Conference on Decision and Control, CDC 2010. Institute of Electrical and Electronics Engineers Inc., p. 4703-4708 6 p. 5717478. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Control of a network of spiking neurons

    Li, J. S., 2010, 8th IFAC Symposium on Nonlinear Control Systems, NOLCOS 2010. 14 ed. IFAC Secretariat, p. 314-319 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 43, no. 14).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    12 Scopus citations

  • Detecting changes in the cervix with Raman spectroscopy

    Vargis, E., Byrd, T., Reese, J., Khabele, D., Al-Hendy, A. & Mahadevan-Jansen, A., 2010, XXII International Conference on Raman Spectroscopy, ICORS 2010. p. 441-442 2 p. (AIP Conference Proceedings; vol. 1267).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Detecting coevolution of functionally related proteins for automated protein annotation

    Kwan, A. L., Dutcher, S. K. & Stormo, G. D., 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 99-105 7 p. 5521705. (10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Detection and sizing of single nanoparticles by mode splitting in an optical microresonator

    Zhu, J., Ozdemir, S. K., Xiao, Y. F., Li, L., He, L., Chen, D. R. & Yang, L., 2010, Conference on Lasers and Electro-Optics, CLEO 2010. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Detection and sizing of single nanoparticles by mode splitting in an optical microresonator

    Zhu, J., Kaya Ozdemir, S., Xiao, Y. F., Li, L., He, L., Chen, D. R. & Yang, L., 2010, Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010. 5500425. (Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Developing brain and heart cells respond similarly to altered mechanical loads

    Filas, B. A., Bayly, P. V. & Taber, L. A., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 773-774 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Enhancement of a label-free dielectrophoretic cell sorter with an integrated impedance detection system

    Carminati, M., Vahey, M. D., Rottigni, A., Ferrari, G., Voldman, J. & Sampietro, M., 2010, 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010. p. 1394-1396 3 p. (14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • Experimental and computational study of the mechanics of brain folding

    Xu, G., Bayly, P. V. & Taber, L. A., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 49-50 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Functional grading of plga nanofiber scaffolds for tendon-to-bone insertion tissue engineering

    Lipner, J., Li, X., Liu, Y. X., Mangano, M., Xie, J., Genin, G. M., Xia, Y. & Thomopoulos, S., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 383-384 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Gaussianization of random inputs by filtering plants: The case of poisson white and telegraph processes

    Ching, S. N., Meerkov, S. M. & Runolfsson, T., 2010, 2010 49th IEEE Conference on Decision and Control, CDC 2010. Institute of Electrical and Electronics Engineers Inc., p. 2650-2655 6 p. 5717835. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Genome-wide analysis of electrical phenotype using isodielectric separation

    Vahey, M. D., Svensson, J. P., Quiros Pesudo, L., Samson, L. D. & Voldman, J., 2010, 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010. p. 725-727 3 p. (14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • In vivo three-dimensional superresolution fluorescence tracking using a double-helix point spread function

    Lew, M. D., Thompson, M. A., Badieirostami, M. & Moerner, W. E., 2010, Single Molecule Spectroscopy and Imaging III. 75710Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7571).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    23 Scopus citations

  • Leveraging natural language processing of clinical narratives for phenotype modeling

    Raghavan, P. & Lai, A. M., 2010, Proceedings of the 3rd Workshop on Ph.D. Students in Information and Knowledge Management, PIKM'10, Co-located with 19th International Conference on Information and Knowledge Management, CIKM'10. p. 57-65 9 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Localizing and tracking single emitters in three dimensions using a double-helix point spread function

    Thompson, M. A., Lew, M. D., Badieirostami, M. & Moerner, W. E., 2010, Conference on Lasers and Electro-Optics, CLEO 2010. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Localizing and tracking single emitters in three dimensions using a Double-Helix Point Spread Function

    Thompson, M. A., Lew, M. D., Badieirostami, M. & Moerner, W. E., 2010, Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010. Association for Computing Machinery, 5499680. (Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Magnetic resonance elastography of the mouse vitreous humor In Vivo

    Clayton, E. H., Wang, Q., Song, S. K., Okamoto, R. J. & Bayly, P. V., 2010, Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010. p. 676-680 5 p. (Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Measurement of brain biomechanics in vivo by magnetic resonance imaging

    Bayly, P. V., Clayton, E. H., Feng, Y., Abney, T., Namani, R., Okamoto, R. J. & Genin, G. M., 2010, Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010. p. 664-675 12 p. (Society for Experimental Mechanics - SEM Annual Conference and Exposition on Experimental and Applied Mechanics 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mechanzically-induced cytoskeletal remodeling in 3D cultures of contractile fibroblasts

    Lee, S. L., Pryse, K. M., Butler, B., Elson, E. L. & Genin, G. M., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 201-202 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Modeling and control of cyclic systems in xerography

    Ching, S. N., Eun, Y., Gross, E., Hamby, E., Kabamba, P., Meerkov, S. & Menezes, A., 2010, Proceedings of the 2010 American Control Conference, ACC 2010. p. 4283-4288 6 p. 5530813. (Proceedings of the 2010 American Control Conference, ACC 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Multimodal nonlinear microscopy at 1.5 μm

    Zhan, C., Joo, C., Li, Q., Berezin, M. Y., Akers, W. J., Ye, Y., Achilefu, S. & Yazdanfar, S., 2010, Multiphoton Microscopy in the Biomedical Sciences X. 75691Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7569).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • On-chip single nanoparticle detection using ultra-high-Q whispering gallery microresonator

    Yang, L., Zhu, J., Ozdemir, S. K., He, L., Xiao, Y., Li, L. & Chen, D. R., 2010, Photonic Microdevices/Microstructures for Sensing II. 76820B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7682).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Optical detection of nanoparticles by mode splitting in whispering-gallery-mode microcavities

    Zhu, J., Ozdemir, S. K., He, L., Chen, D. R. & Yang, L., 2010, Photonic Microdevices/Microstructures for Sensing II. 76820A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7682).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Optimal ensemble control of open quantum systems with a pseudospectral method

    Ruths, J. & Li, S., 2010, 2010 49th IEEE Conference on Decision and Control, CDC 2010. Institute of Electrical and Electronics Engineers Inc., p. 3008-3013 6 p. 5717100. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • Piecewise tri-linear contouring for multi-material volumes

    Feng, P., Ju, T. & Warren, J., 2010, Advances in Geometric Modeling and Processing - 6th International Conference, GMP 2010, Proceedings. p. 43-56 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6130 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Polygonizing extremal surfaces with manifold guarantees

    Li, R., Liu, L., Phan, L., Abeysinghe, S., Grimm, C. & Ju, T., 2010, Proceedings - 14th ACM Symposium on Solid and Physical Modeling, SPM'10. p. 189-194 6 p. (Proceedings - 14th ACM Symposium on Solid and Physical Modeling, SPM'10).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Popup: Automatic paper architectures from 3D models

    Li, X. Y., Shen, C. H., Huang, S. S., Ju, T. & Hu, S. M., Jul 26 2010, ACM SIGGRAPH 2010 Papers, SIGGRAPH 2010. Hoppe, H. (ed.). Association for Computing Machinery, Inc, 111. (ACM SIGGRAPH 2010 Papers, SIGGRAPH 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    20 Scopus citations

  • Principal components of brain deformation in response to skull acceleration: The roles of sliding and tethering between the brain and skull

    Abney, T. M., Feng, Y. A., Pless, R., Okamoto, R. J., Genin, G. M. & Bayly, P. V., 2010, 26th Southern Biomedical Engineering Conference SBEC 2010. p. 9-12 4 p. (IFMBE Proceedings; vol. 32 IFMBE).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Probing cytoskeletal mechanics using biochemical inhibitors

    Pryse, K. M., Abney, T. M., Genin, G. M. & Elson, E. L., 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 357-358 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Scatterer induced mode splitting in active microcavities

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2010, Conference on Lasers and Electro-Optics, CLEO 2010. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Scatterer induced mode splitting in active microcavities

    He, L., Ozdemir, S. K., Zhu, J. & Yang, L., 2010, Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010. 5500453. (Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, CLEO/QELS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review