DBBS - Biochemistry, Biophysics, and Structural Biology

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  • 2009

    Solution of the 'inverse problem of diastole' via kinematic modeling allows determination of ventricular properties and provides mechanistic insights into diastolic heart failure

    Kovács, S. J., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 2354-2357 4 p. 5335021. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • The nano-physiology of mineralized tissues

    Alexander, B. E., Daulton, T. L., Genin, G. M., Pasteris, J. D., Wopenka, B. & Thomopoulos, S., 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART A ed. p. 55-56 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART A).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • The pressure recovery ratio: The invasive index of LV relaxation during filling. Model-based prediction with in-Vivo validation

    Zhang, W., Shmuylovich, L. & Kovács, S. J., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3940-3943 4 p. 5333092. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Three-dimensional superresolution using single-molecule photoswitches and a double-helix PSF

    Moerner, W. E., Thompson, M., Lew, M., Badieirostami, M., Lord, S. J., Conley, N. R., Lee, H. L. D., Pavani, S. R. P. & Piestun, R., 2009, Computational Optical Sensing and Imaging, COSI 2009. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Ultrasonic characterization of backscatter from human cancellous bone with a Renyi entopy metric: Correlation with X-ray bone mineral density

    Wallace, K. D., Hoffmeister, B. K., Thomas, L., Kaste, S. C., Lanza, G. M. & Wickline, S. A., 2009, 2009 IEEE International Ultrasonics Symposium and Short Courses, IUS 2009. Institute of Electrical and Electronics Engineers Inc., p. 542-545 4 p. 5441607. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Using timeline displays to improve medication reconciliation

    Zhu, X., Gold, S., Lai, A., Hripcsak, G. & Cimino, J. J., 2009, Proceedings - International Conference on eHealth, Telemedicine, and Social Medicine, eTELEMED 2009. p. 1-6 6 p. 4782623. (Proceedings - International Conference on eHealth, Telemedicine, and Social Medicine, eTELEMED 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Volume viewer: An interactive tool for fitting surfaces to volume data

    Sowell, R., Liu, L., Ju, T., Grimm, C., Abraham, C., Gokhroo, G. & Low, D., 2009, Sketch-Based Interfaces and Modeling 2009 - ACM SIGGRAPH/Eurographics Symposium Proceedings. p. 141-148 8 p. (Sketch-Based Interfaces and Modeling 2009 - ACM SIGGRAPH/Eurographics Symposium Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations
  • 2008

    An interactive tool for fitting surfaces to volume data

    Sowell, R. T., Liu, L., Ju, T. & Grimm, C. M., 2008, SIGGRAPH'08 - ACM SIGGRAPH 2008 Posters. 76. (SIGGRAPH'08 - ACM SIGGRAPH 2008 Posters).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • An on-chip erbium doped three-photon upconversion silica microlaser emitting at green wavelengths

    Lu, T., Yang, L., Van Loon, R. V. A., Polman, A. & Vahala, K., 2008, 2008 Conference on Quantum Electronics and Laser Science Conference on Lasers and Electro-Optics, CLEO/QELS. 4551653. (2008 Conference on Quantum Electronics and Laser Science Conference on Lasers and Electro-Optics, CLEO/QELS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • An on-chip erbium doped three-photon upconversion silica microlaser emitting at green wavelengths

    Lu, T., Yang, L., van Loon, R. V. A., Polman, A. & Vahala, K., 2008, Conference on Lasers and Electro-Optics, CLEO 2008. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A novel mixed-integer linear optimization framework for the identification of post-translationally modified proteins using ETD/ECD tandem mass spectrometry

    Dimaggio, P. A., Baliban, R., Garcia, B. A. & Floudas, C. A., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A roadmap for caGrid, an enterprise Grid architecture for biomedical research

    Saltz, J., Hastings, S., Langella, S., Oster, S., Kurc, T., Payne, P., Ferreira, R., Plale, B., Goble, C., Ervin, D., Sharma, A., Pan, T., Permar, J., Brezany, P., Siebenlist, F., Madduri, R., Foster, I., Shanbhag, K., Mead, C. & Hong, N. C., 2008, Global Healthgrid: E-Science Meets Biomedical Informatics - Proceedings of HealthGrid 2008. IOS Press, p. 224-237 14 p. (Studies in Health Technology and Informatics; vol. 138).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Controlling diurnal rhythms by light

    Ghosh, B. K., Pakrasi, H. B. & Elvitigala, T. R., 2008, 2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008. p. 1367-1372 6 p. 4795722. (2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Evaporation-enhanced, dynamically-adaptive air (GAS)-cooled heat sink for thermal management of high heat dissipation devices

    Fedorov, A. G. & Meacham, J. M., 2008, 2008 11th IEEE Intersociety Conference on Thermal and Thermomechanical Phenomena in Electronic Systems, I-THERM. p. 333-340 8 p. 4544288. (2008 11th IEEE Intersociety Conference on Thermal and Thermomechanical Phenomena in Electronic Systems, I-THERM).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Fluorescent lifetime of near infrared dyes for structural analysis of serum albumin

    Berezin, M. Y., Lee, H., Akers, W., Nikiforovich, G. & Achilefu, S., 2008, Molecular Probes for Biomedical Applications II. 68670J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6867).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • Inherently directional lasing from a thermal-induced-deformation high-Q microcavity

    Xiao, Y. F., Dong, C. H., Zou, C. L., Han, Z. F., Yang, L. & Guo, G. C., 2008, Conference on Lasers and Electro-Optics, CLEO 2008. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Inherently directional lasing from a thermal-induced-deformation high-Q microcavity

    Xiao, Y. F., Dong, C. H., Zou, C. L., Han, Z. F., Yang, L. & Guo, G. C., 2008, 2008 Conference on Quantum Electronics and Laser Science Conference on Lasers and Electro-Optics, CLEO/QELS. 4551755. (2008 Conference on Quantum Electronics and Laser Science Conference on Lasers and Electro-Optics, CLEO/QELS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Inherently directional lasing from a thermal-induced-deformation high-Q microcavity

    Xiao, Y. F., Dong, C. H., Zou, C. L., Han, Z. F., Yang, L. & Guo, G. C., 2008, Proceedings of 2008 10th Anniversary International Conference on Transparent Optical Networks, ICTON. p. 14-15 2 p. 4598716. (Proceedings of 2008 10th Anniversary International Conference on Transparent Optical Networks, ICTON; vol. 4).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Interactive separation of segmented bones in CT volumes using graph cut

    Liu, L., Raber, D., Nopachai, D., Commean, P., Sinacore, D., Prior, F., Pless, R. & Ju, T., 2008, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 - 11th International Conference, Proceedings. PART 1 ed. p. 296-304 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5241 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    47 Scopus citations

  • Level crossing in toroidal on-chip microcavities

    Schwefel, H. G. L., Yang, L., Oxborrow, M., Douglas Stone, A., Vahala, K. J. & Carmon, T., 2008, Laser Science, LS 2008. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Modeling diurnal rhythms with an array of phase dynamic oscillators

    Wang, W., Pakrasi, H. B. & Ghosh, B. K., 2008, 2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008. p. 1391-1396 6 p. 4795726. (2008 10th International Conference on Control, Automation, Robotics and Vision, ICARCV 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Modeling the tendon-bone insertion: A functionally graded material

    Thomopoulos, S., Kent, A., Wopenka, B., Pasteris, J., Birman, V. & Genin, G., 2008, 8th World Biomaterials Congress 2008. p. 380 1 p. (8th World Biomaterials Congress 2008; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Multimodal optical-nuclear molecular imaging of tumors

    Achilefu, S., Akers, W., Edwards, W. B., Ye, Y., Zhang, Z., Cheney, P., Bloch, S., Xu, B., Berezin, M., Tai, Y. C. & Culver, J. P., 2008, 21st Annual Meeting of the IEEE Lasers and Electro-Optics Society, LEOS 2008. p. 31-32 2 p. 4688473. (Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-LEOS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Reusable skinning templates using cage-based deformations

    Ju, T., Zhou, Q. Y., Van De Panne, M., Cohen-Or, D. & Neumann, U., 2008, ACM SIGGRAPH Asia 2008 Papers, SIGGRAPH Asia'08. 122. (ACM SIGGRAPH Asia 2008 Papers, SIGGRAPH Asia'08).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    28 Scopus citations

  • Saturated root locus: Theory and application

    Ching, S. N., Kabamba, P. T. & Meerkov, S. M., 2008, Proceedings of the 17th World Congress, International Federation of Automatic Control, IFAC. 1 PART 1 ed. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 17, no. 1 PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Segmentation-free skeletonization of grayscale volumes for shape understanding

    Abeysinghe, S. S., Baker, M., Chiu, W. & Ju, T., 2008, IEEE International Conference on Shape Modeling and Applications 2008, Proceedings, SMI. p. 63-71 9 p. 4547951. (IEEE International Conference on Shape Modeling and Applications 2008, Proceedings, SMI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    33 Scopus citations

  • Simulation of the coupling of cell contractility and focal adhesion formation

    Deshpande, V., Pathak, A., McMeeking, R. & Evans, A., 2008, 8th World Biomaterials Congress 2008. p. 240 1 p. (8th World Biomaterials Congress 2008; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Surface reconstruction from point set using projection operator

    Phan, L., Liu, L., Abeysinghe, S., Ju, T. & Grimm, C. M., 2008, SIGGRAPH'08 - ACM SIGGRAPH 2008 Posters. 109. (SIGGRAPH'08 - ACM SIGGRAPH 2008 Posters).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Transient shear wave propagation in a viscoelastic gel cylinder: Comparison of theoryto MRI-based measurements

    Sabet, A., Genin, G. M., Zatlin, B., Christoforou, E. & Bayly, P. V., 2008, 2007 Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, DETC2007. p. 649-652 4 p. (2007 Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, DETC2007; vol. 1 PART A).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Two-dimensional differential interference contrast microscopy based on four-hole variation of Young's interference

    Lew, M., Cui, X., Heng, X. & Yang, C., Feb 29 2008, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues VI. SPIE, 685916. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6859).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2007

    A 4-Hz fundamental linewidth on-chip microlaser

    Yang, L., Lu, T., Carmon, T., Min, B. & Vahala, K. J., 2007, Conference on Lasers and Electro-Optics, CLEO 2007. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • A 4-Hz fundamental linewidth on-chip microlaser

    Yang, L., Lu, T., Carmon, T., Min, B. & Vahala, K. J., 2007, Conference on Lasers and Electro-Optics, 2007, CLEO 2007. 4452623. (Conference on Lasers and Electro-Optics, 2007, CLEO 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    10 Scopus citations

  • A day in the life of a clinical research coordinator: Observations from community practice settings

    Khan, S. A., Kukafka, R., Payne, P. R. O., Bigger, J. T. & Johnson, S. B., Jan 1 2007, MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics: Building Sustainable Health Systems. IOS Press, p. 247-251 5 p. (Studies in Health Technology and Informatics; vol. 129).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • A root locus approach to designing tracking controllers in systems with saturating actuators

    Ching, S. N., Kabamba, P. T. & Meerkov, S. M., 2007, Proceedings of the 2007 American Control Conference, ACC. p. 5828-5833 6 p. 4282634. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Deformation of the human brain induced by mild angular acceleration

    Sabet, A. A., Christoforou, E., Zatlin, B., Genin, G. M. & Bayly, P. V., 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. American Society of Mechanical Engineers (ASME), p. 863-864 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Developing a biomarker for Neuropathic Arthropathy in diabetic patients

    Prior, F., Commean, P. K., Ju, T., Hastings, M., Hildebolt, C. & Sinacore, D. R., 2007, 2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA. IEEE Computer Society, p. 13-16 4 p. 4400873. (2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • DNA-protein interactions: Integrating structure, sequence, and function

    Bulyk, M. L., Hartemink, A. J., Fraenkel, E. & Stormo, G., 2007, Pacific Symposium on Biocomputing 2007, PSB 2007. p. 470-471 2 p. (Pacific Symposium on Biocomputing 2007, PSB 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Ensemble control of linear systems

    Li, J. S. & Khaneja, N., 2007, Proceedings of the 46th IEEE Conference on Decision and Control 2007, CDC. Institute of Electrical and Electronics Engineers Inc., p. 3768-3773 6 p. 4434971. (Proceedings of the IEEE Conference on Decision and Control).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    18 Scopus citations

  • Ensemble control on lie groups

    Li, J. S. & Khaneja, N., 2007, Final Program and Book of Abstracts - NOLCOS 2007: 7th IFAC Symposium on Nonlinear Control Systems. PART 1 ed. IFAC Secretariat, p. 123-128 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 7, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations

  • Fabrication of a disposable electrosonic microarray in thiolene and performance characterization for biomolecule delivery

    Meacham, J. M., Zarnitsyn, V., Varady, M., Atencia, J., Locascio, L., Degertekin, F. L. & Fedorov, A. G., 2007, Proceedings of the 11th International Conference on Miniaturized Systems for Chemistry and Life Sciences, uTAS 2007. Viovy, J.-L., Tabeling, P., Descroix, S. & Malaquin, L. (eds.). Chemical and Biological Microsystems Society, p. 1336-1338 3 p. (Proceedings of the 11th International Conference on Miniaturized Systems for Chemistry and Life Sciences, uTAS 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Magnetic resonance elastography of the mouse brain in vivo

    Atay, S. M. & Bayly, P. V., 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. American Society of Mechanical Engineers (ASME), p. 855-856 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mineral composition at the tendon-to-bone insertion and its role in stress transfer

    Thomopoulos, S., Kent, A., Birman, V., Das, R., Wopenka, B., Pastoris, J. & Genin, G., 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. American Society of Mechanical Engineers (ASME), p. 919-920 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Modeling the electrokinetics of nanoparticles for controlled assembly

    Vahey, M. D., Barsotti, R. J., Wartena, R., Chiang, Y. M., Stellacci, F. & Voldman, J., 2007, Proceedings of the 11th International Conference on Miniaturized Systems for Chemistry and Life Sciences, uTAS 2007. Viovy, J.-L., Tabeling, P., Descroix, S. & Malaquin, L. (eds.). Chemical and Biological Microsystems Society, p. 991-993 3 p. (Proceedings of the 11th International Conference on Miniaturized Systems for Chemistry and Life Sciences, uTAS 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • MRI measurement of surface strain due to growth in the developing ferret brain

    Knutsen, A. K., Kroenke, C. D., Taber, L. A., Neil, J. J. & Bayly, P. V., Dec 1 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. p. 551-552 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Narrow-linewidth microlasers on silicon

    Vahala, K., Yang, L. & Lu, T., 2007, Frontiers in Optics, FiO 2007. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Oil-chip differential interference contrast (DIC) phase imager and beam profiler based on Young's interference

    Cui, X., Lew, M., Heng, X. & Yang, C., 2007, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues V. 64411F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6441).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • On-chip, ultra-low threshold Yb silica laser

    Ostby, E. P., Yang, L. & Vahala, K. J., 2007, Conference on Lasers and Electro-Optics, 2007, CLEO 2007. 4452395. (Conference on Lasers and Electro-Optics, 2007, CLEO 2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • On-chip, ultra-low threshold Yb silica laser

    Ostby, E. P., Yang, L. & Vahala, K. J., 2007, Conference on Lasers and Electro-Optics, CLEO 2007. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Qualitative properties of an entropy-based signal detector

    Hughes, M. S., Marsh, J. N., Wallace, K. D., Thomas, L. J., Lanza, G. M., Wickline, S. A., McCarthy, J. E. & Maurizi, B. N., 2007, 2007 IEEE Ultrasonics Symposium Proceedings, IUS. p. 468-471 4 p. 4409699. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Shape modeling and matching in identifying protein structure from low-resolution images

    Abeysinghe, S. S., Ju, T., Chiu, W. & Baker, M., 2007, Proceedings - SPM 2007: ACM Symposium on Solid and Physical Modeling. p. 223-232 10 p. (Proceedings - SPM 2007: ACM Symposium on Solid and Physical Modeling).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations