Center for Applied Health Informatics (CAHI)

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  • 2025

    DGR-MIL: Exploring Diverse Global Representation in Multiple Instance Learning for Whole Slide Image Classification

    Zhu, W., Chen, X., Qiu, P., Sotiras, A., Razi, A. & Wang, Y., 2025, Computer Vision – ECCV 2024 - 18th European Conference, Proceedings. Leonardis, A., Ricci, E., Roth, S., Russakovsky, O., Sattler, T. & Varol, G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 333-351 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 15096 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2024

    Document-level Clinical Entity and Relation Extraction via Knowledge Base-Guided Generation

    Bhattarai, K., Oh, I. Y., Abrams, Z. B. & Lai, A. M., 2024, BioNLP 2024 - 23rd Meeting of the ACL Special Interest Group on Biomedical Natural Language Processing, Proceedings of the Workshop and Shared Tasks. Demner-Fushman, D., Ananiadou, S., Miwa, M., Roberts, K. & Tsujii, J. (eds.). Association for Computational Linguistics (ACL), p. 318-327 10 p. (BioNLP 2024 - 23rd Meeting of the ACL Special Interest Group on Biomedical Natural Language Processing, Proceedings of the Workshop and Shared Tasks).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Improving Normative Modeling for Multi-Modal Neuroimaging Data Using Mixture-of-Product-of-Experts Variational Autoencoders

    Kumar, S., Payne, P. & Sotiras, A., 2024, IEEE International Symposium on Biomedical Imaging, ISBI 2024 - Conference Proceedings. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Selection Bias from Data Processing in N3C

    N3C Consortium, 2024, Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024. Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. (Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • SelfReg-UNet: Self-Regularized UNet for Medical Image Segmentation

    Zhu, W., Chen, X., Qiu, P., Farazi, M., Sotiras, A., Razi, A. & Wang, Y., 2024, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024 - 27th International Conference, Proceedings. Linguraru, M. G., Dou, Q., Feragen, A., Giannarou, S., Glocker, B., Lekadir, K. & Schnabel, J. A. (eds.). Springer Science and Business Media Deutschland GmbH, p. 601-611 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 15008 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Understanding the Technical Implementation of a Clinical Decision Support SmartApp: A Qualitative Analysis

    Hobensack, M., Withall, J., Cato, K., Dykes, P., Lowenthal, G., Cho, S., Ivory, C., Yen, P. Y. & Rossetti, S., Jan 25 2024, MEDINFO 2023 - The Future is Accessible: Proceedings of the 19th World Congress on Medical and Health Informatics. Bichel-Findlay, J., Otero, P., Scott, P. & Huesing, E. (eds.). IOS Press BV, p. 1382-1383 2 p. (Studies in Health Technology and Informatics; vol. 310).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2023

    Detecting Mental Disorders with Wearables: A Large Cohort Study

    Dai, R., Kannampallil, T., Kim, S., Thornton, V., Bierut, L. & Lu, C., May 9 2023, Proceedings - 8th ACM/IEEE Conference on Internet of Things Design and Implementation, IoTDI 2023. Association for Computing Machinery, p. 39-51 13 p. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

    Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A. & Williams, A. E. & 116 others, Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access

  • Morphological Versus Functional Network Organization: A Comparison Between Structural Covariance Networks and Probabilistic Functional Modes

    Lenzini, P., Earnest, T., Min Ha, S., Bani, A., Sotiras, A. & Bijsterbosch, J., 2023, Machine Learning in Clinical Neuroimaging - 6th International Workshop, MLCN 2023, Held in Conjunction with MICCAI 2023, Proceedings. Abdulkadir, A., Bathula, D. R., Dvornek, N. C., Govindarajan, S. T., Habes, M., Kumar, V., Leonardsen, E., Wolfers, T. & Xiao, Y. (eds.). Springer Science and Business Media Deutschland GmbH, p. 163-172 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14312 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Normative Modeling using Multimodal Variational Autoencoders to Identify Abnormal Brain Volume Deviations in Alzheimer's Disease

    Kumar, S., Payne, P. R. O. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 1246503. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    4 Scopus citations

  • QCResUNet: Joint Subject-Level and Voxel-Level Prediction of Segmentation Quality

    Qiu, P., Chakrabarty, S., Nguyen, P., Ghosh, S. S. & Sotiras, A., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 173-182 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14223 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Scalable Orthonormal Projective NMF via Diversified Stochastic Optimization

    Bani, A., Ha, S. M., Xiao, P., Earnest, T., Lee, J. & Sotiras, A., 2023, Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, Proceedings. Frangi, A., de Bruijne, M., Wassermann, D. & Navab, N. (eds.). Springer Science and Business Media Deutschland GmbH, p. 497-508 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13939 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations
  • 2022

    Perioperative Predictions with Interpretable Latent Representation

    Xue, B., Jiao, Y., Kannampallil, T., Fritz, B., King, C., Abraham, J., Avidan, M. & Lu, C., Aug 14 2022, KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 4268-4278 11 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    8 Scopus citations

  • Self-explaining Hierarchical Model for Intraoperative Time Series

    Li, D., Xue, B., King, C., Fritz, B., Avidan, M., Abraham, J. & Lu, C., 2022, Proceedings - 22nd IEEE International Conference on Data Mining, ICDM 2022. Zhu, X., Ranka, S., Thai, M. T., Washio, T. & Wu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1041-1046 6 p. (Proceedings - IEEE International Conference on Data Mining, ICDM; vol. 2022-November).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Self-explaining neural network with concept-based explanations for ICU mortality prediction

    Kumar, S., Yu, S. C., Kannampallil, T., Abrams, Z., Michelson, A. & Payne, P. R. O., Aug 7 2022, Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022. Association for Computing Machinery, Inc, 8. (Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    4 Scopus citations
  • 2021

    BrainTumorNet: Multi-task learning for joint segmentation of high-grade glioma and brain metastases from MR images

    Chakrabarty, S., Sotiras, A., Milchenko, M., Lamontagne, P., Abraham, C., Robinson, C. & Marcus, D., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 115960K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Transformer-based Multi-target Regression on Electronic Health Records for Primordial Prevention of Cardiovascular Disease

    Poulain, R., Gupta, M., Foraker, R. & Beheshti, R., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 726-731 6 p. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations
  • 2020

    The cancer imaging phenomics toolkit (CaPTk): Technical overview

    Pati, S., Singh, A., Rathore, S., Gastounioti, A., Bergman, M., Ngo, P., Ha, S. M., Bounias, D., Minock, J., Murphy, G., Li, H., Bhattarai, A., Wolf, A., Sridaran, P., Kalarot, R., Akbari, H., Sotiras, A., Thakur, S. P., Verma, R. & Shinohara, R. T. & 5 others, Yushkevich, P., Fan, Y., Kontos, D., Davatzikos, C. & Bakas, S., 2020, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 5th International Workshop, BrainLes 2019, Held in Conjunction with MICCAI 2019, Revised Selected Papers. Crimi, A. & Bakas, S. (eds.). Springer, p. 380-394 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11993 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    46 Scopus citations
  • 2018

    Echo: A large display interactive visualization of ICU data for effective care handoffs

    Thomas, M. M., Kannampallil, T., Abraham, J. & Marai, G. E., Jun 15 2018, 2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017. Institute of Electrical and Electronics Engineers Inc., p. 47-54 8 p. (2017 IEEE Workshop on Visual Analytics in Healthcare, VAHC 2017).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    14 Scopus citations

  • Effect of handoff training on resident communication quality: An observational study

    Abraham, J., Kannampallil, T. G., Ward, C. E., Bogan, C. & Hyderi, A., 2018, Proceedings of the 51st Annual Hawaii International Conference on System Sciences, HICSS 2018. Bui, T. X. (ed.). IEEE Computer Society, p. 2926-2935 10 p. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 2018-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2015

    Graph-based motion-driven segmentation of the carotid atherosclerotique plaque in 2D ultrasound sequences

    Gastounioti, A., Sotiras, A., Nikita, K. S. & Paragios, N., 2015, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Frangi, A. F., Navab, N., Hornegger, J. & Wells, W. M. (eds.). Springer Verlag, p. 551-559 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2014

    Quantifying physician activities in emergency care: An exploratory study

    Abraham, J. & Kannampallil, T. G., 2014, 2014 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2014. Human Factors an Ergonomics Society Inc., p. 798-802 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2014-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2013

    Integrating population- and patient-level data for secondary use of electronic health records to study overweight and obesity

    Roth, C., Shivade, C. P., Foraker, R. E. & Embi, P. J., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 1100 1 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Re-coordinating activities: An investigation of articulation work in patient transfers

    Abraham, J. & Reddy, M. C., 2013, CSCW 2013 - Proceedings of the 2013 ACM Conference on Computer Supported Cooperative Work. p. 67-78 12 p. (Proceedings of the ACM Conference on Computer Supported Cooperative Work, CSCW).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    33 Scopus citations
  • 2009

    Sociotechnical analyis of a neonatal ICU

    Currie, L., Sheehan, B., Graham, P. L., Stetson, P., Cato, K. & Wilcox, A., 2009, Connecting Health and Humans - Proceedings of NI2009: The 10th International Congress on Nursing Informatics. IOS Press, p. 258-262 5 p. (Studies in Health Technology and Informatics; vol. 146).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 2008

    Moving patients around: A field study of coordination between clinical and non-clinical staff in hospitals

    Abraham, J. & Reddy, M. C., 2008, CSCW 08 - Conference Proceedings, 2008 ACM Conference on Computer Supported Cooperative Work. p. 225-228 4 p. (Proceedings of the ACM Conference on Computer Supported Cooperative Work, CSCW).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    47 Scopus citations
  • 2007

    R-CAST-MED: Applying intelligent agents to support emergency medical decision-making teams

    Zhu, S., Abraham, J., Paul, S. A., Reddy, M., Yen, J., Pfaff, M. & DeFlitch, C., 2007, Artificial Intelligence in Medicine - 11th Conference on Artificial Intelligence in Medicine, AIME 2007, Proceedings. p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4594 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations