Bursky Center for Human Immunology & Immunotherapy Programs (CHiiPs)

2024

Contextual unsupervised deep clustering in digital pathology

Sidulova, M., Kahaki, S., Hagemann, I. & Gossmann, A., 2024, In: Proceedings of Machine Learning Research. 248, p. 558-565 8 p.

Research output: Contribution to journal › Conference article › peer-review

2023

Design and Baseline Characteristics of Phase 3, Double-Blind, Randomised Trials Evaluating the Efficacy and Safety of Evobrutinib Versus Teriflunomide in Relapsing Multiple Sclerosis (evolutionRMS 1 and 2)

Montalban, X., Vermersch, P., Arnold, D. L., Bar-Or, A., Cree, B. A. C., Cross, A., Havrdova, E. K., Kappos, L., Stuve, O., Wiendl, H., Wolinsky, J., Bolay, C. L., Hyvert, Y., Javor, A., Guehring, H., Tenenbaum, N. & Tomic, D., Dec 2023, In: Multiple Sclerosis and Related Disorders. 80, 105328.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

TCR-BERT: learning the grammar of T-cell receptors for flexible antigen-binding analyses

Wu, K., Yost, K. E., Daniel, B., Belk, J. A., Xia, Y., Egawa, T., Satpathy, A., Chang, H. Y. & Zou, J., 2023, In: Proceedings of Machine Learning Research. 240, p. 194-229 36 p.

Research output: Contribution to journal › Conference article › peer-review

4 Scopus citations

Two-year follow up on the impact of the COVID-19 pandemic on outcomes in gynecologic oncology patients

Turner, K., Bruce, S., Carbonell, K. V., Mullen, M. M., Hagemann, A. R., McCourt, C., Thaker, P., Khabele, D., Powell, M. A., Mutch, D. G. & Kuroki, L., Aug 2023, In: Gynecologic Oncology Reports. 48, p. S37

Research output: Contribution to journal › Conference article › peer-review

Open Access

2022

Prospective Assessment of Adjunctive Ultrasound-Guided Diffuse Optical Tomography in Women Undergoing Breast Biopsy: Impact on BI-RADS Assessments

Poplack, S. P., Young, C. A., Hagemann, I. S., Luo, J., Herman, C. R., Wiele, K., Li, S., Zeng, Y., Covington, M. F. & Zhu, Q., 2022, In: Optics InfoBase Conference Papers. OW1D.4.

Research output: Contribution to journal › Conference article › peer-review

2020

R-learning in actor-critic model offers a biologically relevant mechanism for sequential decision-making

Shuvaev, S., Starosta, S., Kvitsiani, D., Kepecs, A. & Koulakov, A., 2020, In: Advances in Neural Information Processing Systems. 2020-December

Research output: Contribution to journal › Conference article › peer-review

3 Scopus citations

2019

OUTCOMES ASSOCIATED WITH PERCUTANEOUS CORONARY INTERVENTION PRIOR TO TRANSCATHETER AORTIC VALVE IMPLANTATION

Thangam, M., Thakker, P., Husaini, M., Posenau, J., Sintek, M., Kachroo, P., Lasala, J., Melby, S., Quader, N., Maniar, H., Singh, J., Kurz, H., Bach, R., Amin, A. & Zajarias, A., Mar 12 2019, In: Journal of the American College of Cardiology. 73, 9, p. 1315 1 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

2018

ClinGen Cancer Somatic Working Group – Standardizing and democratizing access to cancer molecular diagnostic data to drive translational research

ClinGen Somatic Working Group, 2018, In: Pacific Symposium on Biocomputing. 0, p. 247-258 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

17 Scopus citations

2015

Bio-inspired computation approach for tumor growth with spatial randomness analysis of kidney cancer xenograft pathology slides

Saribudak, A., Dong, Y., Hsieh, J. & Uyar, M. Ü., 2015, In: EAI International Conference on Bio-inspired Information and Communications Technologies (BICT).

Research output: Contribution to journal › Conference article › peer-review

4 Scopus citations

2010

Applications of table top lasers developed from the FEL

Piston, D. W., 2010, In: Optics InfoBase Conference Papers.

Research output: Contribution to journal › Conference article › peer-review

Image Mapping Spectrometer (IMS) for real time hyperspectral fluorescence microscopy

Gao, L., Elliott, A. D., Kester, R. T., Bedard, N., Hagen, N., Piston, D. W. & Tkaczyk, T. S., 2010, In: Optics InfoBase Conference Papers.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

2008

AMPA receptor imaging by infrared scanning near-field optical microscopy

Generosi, J., Kropf, M., Margaritondo, G., Hirling, H., Catsicas, S., Johnsson, K., Tolk, N. H., Piston, D. W. & Cricenti, A., 2008, In: Physica Status Solidi (C) Current Topics in Solid State Physics. 5, 8, p. 2641-2644 4 p.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

2005

Spectroscopic infrared scanning near-field optical microscopy (IR-SNOM)

Vobornik, D., Margaritondo, G., Sanghera, J. S., Thielen, P., Aggarwal, I. D., Ivanov, B., Tolk, N. H., Manni, V., Grimaldi, S., Lisi, A., Rieti, S., Piston, D. W., Generosi, R., Luce, M., Perfetti, P. & Cricenti, A., Sep 29 2005, In: Journal of Alloys and Compounds. 401, 1-2, p. 80-85 6 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

27 Scopus citations

Yeast cells as a discovery platform for neurodegenerative disease

Lindquist, S., Fraenkel, E., Outeiro, T., Gitler, A., Su, J., Cashikar, A. & Jagadish, S., 2005, In: Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500, p. 102 1 p.

Research output: Contribution to journal › Conference article › peer-review

2004

Ablation of soft tissue at 6.45 μm using a strontium vapor laser

Mackanos, M. A., Ivanov, B., Soldatov, A. N., Kostadinov, I., Mendenhall, M. H., Piston, D. W., Haglund, R. F. & Jansen, E. D., 2004, In: Proceedings of SPIE - The International Society for Optical Engineering. 5319, p. 201-208 8 p.

Research output: Contribution to journal › Conference article › peer-review

13 Scopus citations

Automatic tracking of proteins in sequences of fluorescence images

Li, X., Hao, M., Piston, D. W. & Dawanti, B. M., 2004, In: Proceedings of SPIE - The International Society for Optical Engineering. 5370 II, p. 1364-1371 8 p.

Research output: Contribution to journal › Conference article › peer-review

5 Scopus citations

Imaging of tumor hyper-metabolism with near-infrared fluorescence contrast agents

Chen, Y., Zheng, G., Zhang, Z., Blessington, D., Intes, X., Achilefu, S. & Chance, B., 2004, In: Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5, 29, p. 147-153 7 p., 5474-19.

Research output: Contribution to journal › Conference article › peer-review

Infrared near-field microscopy with the Vanderbilt free electron laser: Overview and perspectives

Vobornik, D., Margaritondo, G., Sanghera, J. S., Thielen, P., Aggarwal, I. D., Ivanov, B., Miller, J. K., Haglund, R., Tolk, N. H., Congiu-Castellano, A., Rizzo, M. A., Piston, D. W., Somma, F., Baldacchini, G., Bonfigli, F., Marolo, T., Flora, F., Montereali, R. M., Faenov, A. & Pikuz, T. & 6 others, Longo, G., Mussi, V., Generosi, R., Luce, M., Perfetti, P. & Cricenti, A., Oct 2004, In: Infrared Physics and Technology. 45, 5-6, p. 409-416 8 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

11 Scopus citations

Intrathecal enzyme replacement therapy reduces lysosomal storage in the brain and meninges of the canine model of MPS I

Kakkis, E., McEntee, M., Vogler, C., Le, S., Levy, B., Belichenko, P., Mobley, W., Dickson, P., Hanson, S. & Passage, M., 2004, In: Molecular genetics and metabolism. 83, 1-2, p. 163-174 12 p.

Research output: Contribution to journal › Conference article › peer-review

156 Scopus citations

Optical nanospectroscopy applications in material science

Cricenti, A., Longo, G., Ustione, A., Mussi, V., Generosi, R., Luce, M., Rinaldi, M., Perfetti, P., Vobornik, D., Margaritondo, G., Sanghera, J. S., Thielen, P., Aggarwal, I. D., Ivanov, B., Miller, J. K., Haglund, R., Tolk, N. H., Congiu-Castellano, A., Rizzo, M. A. & Piston, D. W. & 8 others, Somma, F., Baldacchini, G., Bonfigli, F., Marolo, T., Flora, F., Montereali, R. M., Faenov, A. & Pikuz, T., Jul 15 2004, In: Applied Surface Science. 234, 1-4, p. 374-386 13 p.

Research output: Contribution to journal › Conference article › peer-review

4 Scopus citations

Sensitivity enhancement of a QCM biosensor using polymer treatment

Atashbar, M. Z., Bejcek, B., Vijh, A. & Singamaneni, S., 2004, In: Proceedings - IEEE Ultrasonics Symposium. 1, p. 329-332 4 p., U6-C-5.

Research output: Contribution to journal › Conference article › peer-review

Sonoporation of cells for drug and gene delivery

Pan, H., Zhou, Y., Sieling, F., Shi, J., Cui, J. & Deng, C., 2004, In: Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 V, p. 3531-3534 4 p.

Research output: Contribution to journal › Conference article › peer-review

13 Scopus citations

Synthesis and evaluation of novel galactose-carbocyanine fluorescent contrast agents with enhanced hydrophilicity and rigid molecular constraint

Zhang, Z., Bloch, S. & Achilefu, S., 2004, In: Proceedings of SPIE - The International Society for Optical Engineering. 5329, p. 262-268 7 p.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

Targeting the expression of integrin receptors in tumors

Bloch, S., Liang, K., Dorshow, R. B., Ye, Y. & Achilefu, S., 2004, In: Proceedings of SPIE - The International Society for Optical Engineering. 5329, p. 222-228 7 p.

Research output: Contribution to journal › Conference article › peer-review

5 Scopus citations

2003

A technique for validating image-guided gene therapy

Harris, S., Hallahan, D. & Galloway, R., 2003, In: Proceedings of SPIE - The International Society for Optical Engineering. 5029, p. 330-337 8 p.

Research output: Contribution to journal › Conference article › peer-review

4 Scopus citations

Determination of subsurface tumor localization in animal models with near-infrared (NIR) fluorescence imaging

Chen, Y., Blessington, D., Zhang, Z., Liu, Q., Zhou, L., Mu, C., Intes, X., Achilefu, S., Li, H., Zhang, M., Zheng, G. & Chance, B., Dec 5 2003, In: Proceedings of SPIE - The International Society for Optical Engineering. 4955, p. 322-329 8 p.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

IR-SNOM on lithium fluoride films with regular arrays based on colour centres

Cricenti, A., Longo, G., Mussi, V., Generosi, R., Luce, M., Perfetti, P., Vobornik, D., Margaritondo, G., Thielen, P., Sanghera, J. S., Aggarwal, I. D., Tolk, N. H., Baldacchini, G., Bonfigli, F., Flora, F., Marolo, T., Montereali, R. M., Faenov, A., Pikuz, T. & Somma, F. & 1 others, Piston, D. W., 2003, In: Physica Status Solidi C: Conferences. 8, p. 3075-3080 6 p.

Research output: Contribution to journal › Conference article › peer-review

6 Scopus citations

Statistical tests for discriminating inaccurate input functions in dynamic mouse microPET studies

Huang, S. C., Wu, H. M., Shoehi-Jadid, K., Stout, D. & Chatziioannou, A., Dec 1 2003, In: IEEE Nuclear Science Symposium Conference Record. 4, p. 2853-2857 5 p., M11-227.

Research output: Contribution to journal › Conference article › peer-review

2002

2001

An axisymmetric elastic layered half-space model for micropipette aspiration of the chondrocyte pericellular matrix

Alexopoulos, L. G., Haider, M. A. & Guilak, F., Dec 1 2001, In: American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 51, p. 313-314 2 p.

Research output: Contribution to journal › Conference article › peer-review

Effects of extracellular matrix mechanics on neuronal process extension

Flanagan, L. A., Ju, Y. E. & Janmey, P. A., 2001, In: American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 50, p. 379-380 2 p.

Research output: Contribution to journal › Conference article › peer-review

2 Scopus citations

New approach to optical imaging of tumors

Achilefu, S., Bugaj, J. E., Dorshow, R. B., Jimenez, H. N. & Rajagopalan, R., 2001, In: Proceedings of SPIE - The International Society for Optical Engineering. 4259, p. 110-114 5 p.

Research output: Contribution to journal › Conference article › peer-review

10 Scopus citations

Site-specific tumor targeted fluorescent contrast agents

Achilefu, S., Bugaj, J. E., Dorshow, R. B., Jimenez, H. N., Rajagopalan, R., Wilhelm, R. R., Webb, E. G. & Erion, J. L., Jan 1 2001, In: Proceedings of SPIE - The International Society for Optical Engineering. 4156, p. 69-78 10 p.

Research output: Contribution to journal › Conference article › peer-review

7 Scopus citations

Targeted Type 1 phototherapeutic agents using azido-peptide bioconjugates

Rajagopalan, R., Achilefu, S. A., Jimenez, H. N., Webb, E. G., Schmidt, M. A., Bugaj, J. E. & Dorshow, R. B., 2001, In: Proceedings of SPIE - The International Society for Optical Engineering. 4259, p. 129-132 4 p.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

2000

3D CDS depiction of tumor vascularity and flow before, during, and after treatment in an animal model

Donnelly, E. F., Fleischer, A. C., Holburn, G., Thrisk, G., Pickens, D. & Hallahan, D. E., 2000, In: Ultrasound in Medicine and Biology. 26, SUPPL. 2, p. A68

Research output: Contribution to journal › Conference article › peer-review

Analysis of complex bursting in cortical pyramidal neuron models

Kepecs, A. & Wang, X. J., Jun 2000, In: Neurocomputing. 32-33, p. 181-187 7 p.

Research output: Contribution to journal › Conference article › peer-review

55 Scopus citations

Polyionic fluorescent bioconjugates as tracer agents for continuous monitoring of renal function

Rajagopalan, R., Bugaj, J. E., Dorshow, R. B., Venkatramani, C. J., Uetrecht, P. A. & Achilefu, S., Jan 1 2000, In: Proceedings of SPIE - The International Society for Optical Engineering. 3924, p. 28-34 7 p.

Research output: Contribution to journal › Conference article › peer-review

Tumor specific fluorescent contrast agents

Achilefu, S., Dorshow, R. B., Bugaj, J. E. & Rajagopalan, R., Jan 1 2000, In: Proceedings of SPIE - The International Society for Optical Engineering. 3917, p. 80-86 7 p.

Research output: Contribution to journal › Conference article › peer-review

9 Scopus citations

1999

Monitoring physiological function by detection of exogenous fluorescent contrast agents

Dorshow, R. B., Bugaj, J. E., Achilefu, S., Rajagopalan, R. & Combs, A. H., Jan 1 1999, In: Proceedings of SPIE - The International Society for Optical Engineering. 3599, p. 2-8 7 p.

Research output: Contribution to journal › Conference article › peer-review

5 Scopus citations

1993

An algorithm for grey/white matter segmentation of MRI brain images

Shimony, J. S. & Morris, H. D., Jun 23 1993, In: Proceedings of SPIE - The International Society for Optical Engineering. 2035, p. 89-94 6 p.

Research output: Contribution to journal › Conference article › peer-review

Two-photon excitation fluorescence microscopy in living systems

Piston, D. W., 1993, In: Proceedings - Annual Meeting, Microscopy Society of America. p. 154-155 2 p.

Research output: Contribution to journal › Conference article › peer-review

2 Scopus citations

1989

Instrumentation for load and displacement controlled studies on soft connective tissues

Guilak, F., Best, B. A., Ratcliffe, A. & Mow, V. C., Dec 1 1989, In: American Society of Mechanical Engineers, Applied Mechanics Division, AMD. 98, p. 113-116 4 p.

Research output: Contribution to journal › Conference article › peer-review

13 Scopus citations

Bursky Center for Human Immunology & Immunotherapy Programs (CHiiPs)

Research output

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