Bursky Center for Human Immunology & Immunotherapy Programs (CHiiPs)

2024

6D single-fluorogen orientation-localization microscopy for elucidating the architecture of beta-sheet assemblies and biomolecular condensates

Wu, T., Zhou, W., Rudra, J. S., Pappu, R. V. & Lew, M. D., 2024, High-Speed Biomedical Imaging and Spectroscopy IX. Tsia, K. K. & Goda, K. (eds.). SPIE, 1285302. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12853).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Deep learning-based ROI detection of AEH and EC on histopathology WSIs for predicting hormonal treatment response

Kahaki, S., Hagemann, I. S., Cha, K. H., Trindade, C., Petrick, N., Kostelecky, N., Borden, L. E., Atwi, D., Fung, K. M. & Chen, W., 2024, Medical Imaging 2024: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 129330S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12933).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

DeST-OT: Alignment of Spatiotemporal Transcriptomics Data

Halmos, P., Liu, X., Gold, J., Chen, F., Ding, L. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 434-437 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography from Spatially Resolved Transcriptomics

Ma, C., Balaban, M., Liu, J., Chen, S., Ding, L. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 466-469 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Investigating chemotherapy effects on peripheral nerve elasticity

Cheburkanov, V., Du, J., Berezin, M. Y. & Yakovlev, V. V., 2024, Visualizing and Quantifying Drug Distribution in Tissue VIII. Chan, K. F. & Evans, C. L. (eds.). SPIE, 1282109. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12821).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Manipulating Light for the Detection of Viruses in Resource-Limited Settings

Qavi, A. J., Jiang, Q., Javad Aman, M., Vu, H., Zetlin, L., Dye, J. M., Froude, J. W., Leung, D. W., Holtsberg, F., Crick, S. L. & Amarasinghe, G., 2024, Frontiers in Biological Detection: From Nanosensors to Systems XVI. Danielli, A., Miller, B. L. & Weiss, S. M. (eds.). SPIE, 128610B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12861).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

WIN-PDQ: A Wiener-estimator-based projection-domain quantitative SPECT method that accounts for intra-regional uptake heterogeneity

Li, Z., Benabdallah, N., Thorek, D. L. J. & Jha, A. K., 2024, Medical Imaging 2024: Physics of Medical Imaging. Fahrig, R., Sabol, J. M. & Li, K. (eds.). SPIE, 1292512. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12925).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2023

A reconfigurable, additively manufactured vibrotactile stimulation device for chronic pain

Adams, J., Demarest, P., Donovan, K., Brunner, P., Burton, H., Haroutounian, S., Leuthardt, E. & Gorlewicz, J., 2023, Proceedings of the 2023 Design of Medical Devices Conference, DMD 2023. American Society of Mechanical Engineers, v001t04a012. (Proceedings of the 2023 Design of Medical Devices Conference, DMD 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Attention-Based CNN-BiLSTM for Sleep State Classification of Spatiotemporal Wide-Field Calcium Imaging Data

Zhang, X., Landsness, E. C., Culver, J. P., Lee, J.-M. & Anastasio, M. A., 2023, Neural Imaging and Sensing 2023. Luo, Q., Ding, J. & Fu, L. (eds.). SPIE, 123650B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12365).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

1 Scopus citations

Deep Learning Driven Light-Based Motor Mapping of Multiple Limb Movements in Mice Reveals Behaviorally Relevant Movements

Khanal, N., Padawer-Curry, J., Schulte, K., Voss, T., Bice, A. R., Lee, J. M. & Bauer, A. Q., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BTu1B.5. (Optics and the Brain, BRAIN 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Dual-Cycle: Self-Supervised Dual-View Fluorescence Microscopy Image Reconstruction using CycleGAN

Kerepecky, T., Liu, J., Ng, X. W., Piston, D. W. & Kamilov, U. S., 2023, ICASSP 2023 - 2023 IEEE International Conference on Acoustics, Speech and Signal Processing, Proceedings. Institute of Electrical and Electronics Engineers Inc., (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2023-June).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Imaging of dendrites and sparse interneuronal networks with 3D random access microscopy

Rózsa, B., Szadai, Z., Judák, L., Chiovini, B., Juhász, G., Ócsai, K., Pálfi, D., Mezriczky, Z., Szalay, G., Katona, G., Mihály, A., Szepesi, Á., Mucsi, Z., Roska, B., Pi, H. J., Chevy, Q., Albeanu, F. & Kepecs, A., 2023, Optics and the Brain, BRAIN 2023. Optical Society of America, BW3B.6. (Optics and the Brain, BRAIN 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Interpretable graph convolutional network enables triple negative breast cancer detection in imaging mass cytometry

Lu, P., Oetjen, K. A. & Thorek, D. L. J., 2023, Medical Imaging 2023: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 124710C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12471).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Non-invasive classification of IDH mutation status of gliomas from multi-modal MRI using a 3D convolutional neural network

Chakrabarty, S., LaMontagne, P., Shimony, J., Marcus, D. & Sotiras, A., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, 124650W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Optimal dynamic step and shoot temporal design for quantitative multi-organ dynamic PET imaging

Li, S., Laforest, R., Whitehead, T., Tai, Y. C. & Shoghi, K., 2023, Medical Imaging 2023: Physics of Medical Imaging. Yu, L., Fahrig, R. & Sabol, J. M. (eds.). SPIE, 124631H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12463).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Predicting COVID-19 Severity Using a Cut-and-Solve Feature Selection Approach

Smith, K., Chan, M., Brandenburg, J., Jones, K. A., Campagna, S. R., Garvin, M., Templeton, A. R., Jacobson, D., Cruchaga, C. & Climer, S., 2023, Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023. Jiang, X., Wang, H., Alhajj, R., Hu, X., Engel, F., Mahmud, M., Pisanti, N., Cui, X. & Song, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 3370-3375 6 p. (Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Reverse tuning of whispering gallery mode microresonators

Adolphson, M. R., Qavi, A. J., Shmuylovich, L., Liao, J., Amarasinghe, G. K. & Yang, L., 2023, Optics and Biophotonics in Low-Resource Settings IX. Levitz, D. & Ozcan, A. (eds.). SPIE, 1236902. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12369).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Towards peripheral neuron regeneration: Imaging nerve biomechanics using Brillouin spectroscopy

Cheburkanov, V., Du, J., Berezin, M. & Yakovlev, V. V., 2023, Optical Biopsy XXI: Toward Real-Time Spectroscopic Imaging and Diagnosis. Alfano, R. R. & Seddon, A. B. (eds.). SPIE, 123730E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12373).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Weakly Supervised Deep Learning for Predicting the Response to Hormonal Treatment of Women with Atypical Endometrial Hyperplasia: A Feasibility Study

Kahaki, S., Hagemann, I. S., Cha, K., Trindade, C. J., Petrick, N., Kostelecky, N. & Chen, W., 2023, Medical Imaging 2023: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 124710T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12471).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

2022

A VIBROTACTILE WEARABLE FOR THE EAR FOR VAGUS NERVE STIMULATION

Adams, J., Doherty, C., Leuthardt, E. & Gorlewicz, J., 2022, Proceedings of the 2022 Design of Medical Devices Conference, DMD 2022. American Society of Mechanical Engineers, V001T04A006. (Proceedings of the 2022 Design of Medical Devices Conference, DMD 2022).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Deep learning framework to synthesize high-count preclinical PET images from low-count preclinical PET images

Dutta, K., Liu, Z., Laforest, R., Jha, A. & Shoghi, K. I., 2022, Medical Imaging 2022: Physics of Medical Imaging. Zhao, W. & Yu, L. (eds.). SPIE, 120311F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12031).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

Reverse Tuning of Whispering Gallery Mode Microresonators

Adolphson, M. R., Qavi, A. J., Shmuylovich, L., Amarasinghe, G. K. & Yang, L., 2022, Optics and Biophotonics in Low-Resource Settings VIII. Levitz, D. & Ozcan, A. (eds.). SPIE, 1195003. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11950).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Snapshot image mapping spectrometer with 3D printed multifaceted mapping mirror for biomedical applications

Lu, J., Ng, X. W., Piston, D. & Tkaczyk, T. S., 2022, Novel Optical Systems, Methods, and Applications XXV. Hahlweg, C. F. & Mulley, J. R. (eds.). SPIE, 122160B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12216).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

4 Scopus citations

Wide field imaging of neural, metabolic and hemodynamic activity

Wang, X., Padawer-Curry, J., Bice, A. R., Rosenthal, Z. P., Lee, J. M. & Bauer, A. Q., 2022, Optics and the Brain, BRAIN 2022. Optica Publishing Group (formerly OSA), BM4C.3. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2021

HSKL: A Machine Learning Framework for Hyperspectral Image Analysis

Cao, Q., Mishra, D., Wang, J., Wang, S., Hurbon, H. & Berezin, M. Y., Mar 24 2021, 2021 11th Workshop on Hyperspectral Imaging and Signal Processing: Evolution in Remote Sensing, WHISPERS 2021. IEEE Computer Society, 9483968. (Workshop on Hyperspectral Image and Signal Processing, Evolution in Remote Sensing; vol. 2021-March).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Idcube Lite - A Free Interactive Discovery Cube Software for Multi and Hyperspectral Applications

Mishra, D., Hurbon, H., Wang, J., Wang, S. T., Du, T., Wu, Q., Kim, D., Basir, S., Cao, Q., Zhang, H., Xu, K., Yu, A., Zhang, Y., Huang, Y., Garrett, R., Gerasimchuk-Djordjevic, M. & Berezin, M. Y., Mar 24 2021, 2021 11th Workshop on Hyperspectral Imaging and Signal Processing: Evolution in Remote Sensing, WHISPERS 2021. IEEE Computer Society, 9484038. (Workshop on Hyperspectral Image and Signal Processing, Evolution in Remote Sensing; vol. 2021-March).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Selection of hyperspectral endmember extraction algorithm for tumor delineation in animal models

Mishra, D., Wang, J., Wang, S. T., Cao, Q., Hurbon, H., Akers, W. & Berezin, M. Y., 2021, Optical Molecular Probes, Imaging and Drug Delivery, OMP 2021. Optica Publishing Group (formerly OSA), OF2E.2. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2020

Microcarrier assisted synthesis in a longitudinal acoustic trap

Binkley, M. M., Cui, M., Berezin, M. Y. & Mark Meacham, J., 2020, 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017. Chemical and Biological Microsystems Society, p. 756-757 2 p. (21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Minimizing cotton retention in neurosurgical procedures: Which imaging modality can help?

Bechtold, R., Tselepidakis, N., Garlow, B., Glaister, S., Zhu, W., Liu, R., Szewc, A., Tandon, A., Buono, Z., Pitingolo, J., Madalo, C., Ferrara, I., Shale, C., Benassi, T., Belzberg, M., Gorelick, N., Hwang, B., Molina, C. A., Coles, G. & Tyler, B. & 4 others, Suk, I., Huang, J., Brem, H. & Manbachi, A., 2020, Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging. Krol, A. & Gimi, B. S. (eds.). SPIE, 1131704. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11317).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Predicting breast cancer treatment response using diffuse optical tomography and ultrasound

Zhu, Q., Poplack, S., Ademuyiwa, F. & Young, C., 2020, Optical Tomography and Spectroscopy, OTS 2020. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F179-OTS-2020).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

SNIPR: Stroke Neuroimaging Phenotype Repository

Mohammadian Foroushani, H., Dhar, R., Chen, Y., Gurney, J., Hamzehloo, A., Lee, J. M. & Marcus, D. S., 2020, Medical Imaging 2020: Imaging Informatics for Healthcare, Research, and Applications. Chen, P.-H. & Deserno, T. M. (eds.). SPIE, 113180B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11318).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

2019

Acoustofluidic platform for in-channel immunoassays

Binkley, M. M., Cui, M., Yantis, J., Keeler, S. P., Gerovac, B. J., Byers, D. E., Holtzman, M. J. & Mark Meacham, J., 2019, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications XI. Achilefu, S. & Raghavachari, R. (eds.). SPIE, 1089304. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10893).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

A curved port delivery system for laser interstitial thermal therapy of brain tumors

Agwu, N., Deprow, K., Williams, J. E., Gorlewicz, J. L. & Leuthardt, E. C., 2019, Frontiers in Biomedical Devices, BIOMED - 2019 Design of Medical Devices Conference, DMD 2019. American Society of Mechanical Engineers (ASME), (Frontiers in Biomedical Devices, BIOMED - 2019 Design of Medical Devices Conference, DMD 2019).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Anesthesia affects forepaw motor output and movement complexity during light-based motor mapping

Voss, T. R. C., Bice, A. R., Lee, J. M. & Bauer, A. Q., 2019, Optics and the Brain, BRAIN 2019. Optica Publishing Group (formerly OSA), BM2A.5. (Optics InfoBase Conference Papers; vol. Part F169-BRAIN 2019).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Computer-aided tumor segmentation from t2-weighted mr images of patient-derived tumor xenografts

Roy, S. & Shoghi, K. I., 2019, Image Analysis and Recognition - 16th International Conference, ICIAR 2019, Proceedings. Karray, F., Yu, A. & Campilho, A. (eds.). Springer Verlag, p. 159-171 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11663 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

30 Scopus citations

Detecting inflammatory responses in live animal models with near-infrared ROS probes

Zhou, H., Akers, W., Brody, S., Wood, M. & Berezin, M. Y., 2019, Optical Molecular Probes, Imaging and Drug Delivery, OMP 2019. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F163-OMP 2019).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Excitatory and inhibitory circuits differentially regulate local and distant cerebral hemodynamics

Lee, J., Bice, A. R., Rosenthal, Z. P., Lee, J. M. & Bauer, A. Q., Apr 8 2019, Optics and the Brain - Proceedings Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA, BRAIN, NTM, OMA, OMP). Optical Society of America (OSA), (Optics and the Brain - Proceedings Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA, BRAIN, NTM, OMA, OMP)).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Gene silencing therapy for in situ elastic matrix regenerative repair

Carney, S., Broekelmann, T., Mecham, R. P. & Ramamurthi, A., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, p. 943 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

In-vivo cortical thickness estimation from high-resolution T₁w MRI scans in healthy and mucopolysaccharidosis affected dogs

Labounek, R., Mai, K., Mueller, B., Ellinwood, N. M., DIckson, P. & Nestrasil, I., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 2848-2851 4 p. 8856826. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Patterns of intrinsic neural and hemodynamic activity recover uniquely following stroke

Kim, B., Rosenthal, Z., Culver, J. P., Lee, J. M. & Bauer, A. Q., 2019, Optics and the Brain, BRAIN 2019. OSA - The Optical Society, BM2A.6. (Optics InfoBase Conference Papers; vol. Part F169-BRAIN 2019).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Sustained-released platelet-rich plasma from polyethylene glycol hydrogels exerts beneficial effects on chondrocytes

Blanco, A., Jain, E., Chinzei, N., Case, N., Sell, S. A., Rai, M. F. & Zustiak, S. P., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, p. 517 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2018

An active visible nanophotonics platform for sub-millisecond deep brain neural stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., 2018, CLEO: Applications and Technology, CLEO_AT 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F92-CLEO_AT 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

An Active Visible Nanophotonics Platform for Sub-Millisecond Deep Brain Neural Stimulation

Mohanty, A., Li, Q., Tadayon, M. A., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A. & Lipson, M., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8426321. (2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Differences in the commonly used genotype imputation algorithms and their imputation accuracy estimates

Parn, K., Pirinen, M., Kals, M., Magi, R., Salomaa, V., Boehnke, M., Hall, I., Stitziel, N., Freimer, N., Daly, M., Palotie, A., Ripatti, S. & Palta, P., Dec 24 2018, Proceedings - IEEE 14th International Conference on eScience, e-Science 2018. Institute of Electrical and Electronics Engineers Inc., p. 293-294 2 p. 8588677. (Proceedings - IEEE 14th International Conference on eScience, e-Science 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Effect of linkers on the α^vβ³ integrin targeting efficiency of cyclic RGD-conjugates

Karmakar, P., Grabowska, D., Sudlow, G., Ziabrev, K., Sanyal, N. & Achilefu, S., 2018, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications X. Achilefu, S. & Raghavachari, R. (eds.). SPIE, 1050809. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10508).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Functional recovery after stroke is negatively influenced by contralesional homotopic activity

Bauer, A. Q., Kraft, A. W., Baxter, G. A., Bice, A. R., Bruchas, M. R., Lee, J. M. & Culver, J. P., 2018, Optics and the Brain, BRAIN 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F88-BRAIN 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Nonlinear shape regression for filtering segmentation results from calcium imaging

Wang, J., Fu, Z., Sadeghradehyazdi, N., Kipnis, J. & Acton, S. T., Aug 29 2018, 2018 IEEE International Conference on Image Processing, ICIP 2018 - Proceedings. IEEE Computer Society, p. 738-742 5 p. 8451845. (Proceedings - International Conference on Image Processing, ICIP).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Optical imaging in a mouse model of Glioma Identifies different causes for proximal and distal disruptions to functional connectivity

Orukari, I., Siegel, J. S., Bauer, A. Q., Baxter, G. A., Shimony, J. S., Rubin, J. B. & Culver, J. P., 2018, Optics and the Brain, BRAIN 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F88-BRAIN 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Photoacoustic microscopy enables multilayered histological imaging of human breast cancer without staining

Wong, T. T. W., Zhang, R., Hai, P., Aft, R. L., Novack, D. V. & Wang, L. V., 2018, Photons Plus Ultrasound: Imaging and Sensing 2018. Wang, L. V. & Oraevsky, A. A. (eds.). SPIE, 1049443. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10494).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

The relationship between the slow oscillation and underlying resting state cortical activity during anesthesia and NREM sleep

Brier, L. M., Landsness, E. C., Mensen, A., Wright, P. W., Baxter, G. A., Snyder, A. Z., Bauer, A. Q., Lee, J. M. & Culver, J. P., 2018, Clinical and Translational Biophotonics, TRANSLATIONAL 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F91-TRANSLATIONAL 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Bursky Center for Human Immunology & Immunotherapy Programs (CHiiPs)

Research output

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